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IMP Reference Guide  2.10.0
The Integrative Modeling Platform
IMP.pmi.macros.BuildModel1 Class Reference

Deprecated building macro - use BuildSystem() More...

Inherits object.

Detailed Description

Deprecated building macro - use BuildSystem()

Deprecated:
As of IMP release 2.5.

See the IMP Deprecation Policy for more information about deprecation in IMP. Use BuildSystem instead

Note
This class is only available in Python.

Definition at line 1096 of file macros.py.

Public Member Functions

def __init__
 Constructor. More...
 
def build_model
 Create model. More...
 

Constructor & Destructor Documentation

def IMP.pmi.macros.BuildModel1.__init__ (   self,
  representation 
)

Constructor.

Parameters
representationThe PMI representation

Definition at line 1100 of file macros.py.

Member Function Documentation

def IMP.pmi.macros.BuildModel1.build_model (   self,
  data_structure,
  sequence_connectivity_scale = 4.0,
  sequence_connectivity_resolution = 10,
  rmf_file = None,
  rmf_frame_number = 0,
  rmf_file_map = None,
  skip_connectivity_these_domains = None,
  skip_gaussian_in_rmf = False,
  skip_gaussian_in_representation = False 
)

Create model.

Parameters
data_structureList of lists containing these entries: comp_name, hier_name, color, fasta_file, fasta_id, pdb_name, chain_id, res_range, read_em_files, bead_size, rb, super_rb, em_num_components, em_txt_file_name, em_mrc_file_name, chain_of_super_rb, keep_gaussian_flexible_beads (optional)
sequence_connectivity_scale
rmf_file
rmf_frame_number
rmf_file_map: a dictionary that map key=component_name:value=(rmf_file_name, rmf_frame_number, rmf_component_name)

Definition at line 1114 of file macros.py.


The documentation for this class was generated from the following file: