distance.h File Reference

distance metrics More...

Include dependency graph for distance.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
namespace	IMP
	The IMP kernel provides base classes and key shared functionality.
namespace	IMP::atom
	This module contains functionality for dealing with atoms and proteins.
Functions
std::pair< double, double >	IMP::atom::get_component_placement_score (const core::XYZs &ref1, const core::XYZs &ref2, const core::XYZs &mdl1, const core::XYZs &mdl2)
	Measure the difference between two placements of the same set of points.
template<class Vecto3DsOrXYZs0 , class Vecto3DsOrXYZs1 >
double	IMP::atom::get_native_overlap (const Vecto3DsOrXYZs0 &m1, const Vecto3DsOrXYZs1 &m2, double threshold)
	Computes the native overlap between two sets of 3D points.
double	IMP::atom::get_pairwise_rmsd_score (const core::XYZs &ref1, const core::XYZs &ref2, const core::XYZs &mdl1, const core::XYZs &mdl2)
	Measure the RMSD between two placements of the same set of points.
std::pair< double, double >	IMP::atom::get_placement_score (const core::XYZs &from, const core::XYZs &to)
	Measure the difference between two placements of the same set of points.
template<class Vecto3DsOrXYZs0 , class Vecto3DsOrXYZs1 >
double	IMP::atom::get_rmsd (const Vecto3DsOrXYZs0 &m1, const Vecto3DsOrXYZs1 &m2, const IMP::algebra::Transformation3D &tr_for_second=IMP::algebra::get_identity_transformation_3d())
	Calculate the root mean square deviation between two sets of 3D points.

---

Detailed Description

distance metrics

Copyright 2007-2010 IMP Inventors. All rights reserved.