IMP systems

Benchmark of the FRET<sub>R</sub> Bayesian restraint [more...]
This system (using these input files) was tested but does not work with:
IMP develop branch (2014-04-02), revision c794dbddf5 (fast build)
Detailed test information
test.py FAILED with code 1 (took 23 minutes) and stderr:
Traceback (most recent call last):
  File "/netapp/sali/ben/imp_biosys_develop_c794dbddf5/imp_biological_systems/fret_benchmark/DATA/SCRIPTS/BENCHMARK_LINKER/sample.py", line 380, in <module>
    fret_set=IMP.RestraintSet("Fret")
  File "/salilab/diva1/home/imp/develop/20140402-c794dbd/lib/fast64/IMP/kernel/__init__.py", line 2446, in __init__
    this = _IMP_kernel.new_RestraintSet(*args)
NotImplementedError: Wrong number of arguments for overloaded function 'new_RestraintSet'.
  Possible C/C++ prototypes are:
    IMP::kernel::RestraintSet(IMP::kernel::Model *,double,std::string const &)
    IMP::kernel::RestraintSet(IMP::kernel::Model *,double)
    IMP::kernel::RestraintSet(IMP::kernel::Model *,std::string const &)
    IMP::kernel::RestraintSet(IMP::kernel::Model *)
    IMP::kernel::RestraintSet(IMP::kernel::RestraintsTemp const &,double,std::string const &)
    IMP::kernel::RestraintSet(IMP::kernel::RestraintsTemp const &,double)

Traceback (most recent call last):
  File "DATA/SCRIPTS/ANALYSIS/do_analysis.py", line 29, in <module>
    for line in open(dir+"/"+test_dir+"/best_posterior.dat"):
IOError: [Errno 2] No such file or directory: 'RESULTS_LINKER/testdir1/best_posterior.dat'
ETraceback (most recent call last):
  File "/netapp/sali/ben/imp_biosys_develop_c794dbddf5/imp_biological_systems/fret_benchmark/DATA/SCRIPTS/BENCHMARK_NOLINKER/sample.py", line 355, in <module>
    fret_set=IMP.RestraintSet("Fret")
  File "/salilab/diva1/home/imp/develop/20140402-c794dbd/lib/fast64/IMP/kernel/__init__.py", line 2446, in __init__
    this = _IMP_kernel.new_RestraintSet(*args)
NotImplementedError: Wrong number of arguments for overloaded function 'new_RestraintSet'.
  Possible C/C++ prototypes are:
    IMP::kernel::RestraintSet(IMP::kernel::Model *,double,std::string const &)
    IMP::kernel::RestraintSet(IMP::kernel::Model *,double)
    IMP::kernel::RestraintSet(IMP::kernel::Model *,std::string const &)
    IMP::kernel::RestraintSet(IMP::kernel::Model *)
    IMP::kernel::RestraintSet(IMP::kernel::RestraintsTemp const &,double,std::string const &)
    IMP::kernel::RestraintSet(IMP::kernel::RestraintsTemp const &,double)

Traceback (most recent call last):
  File "DATA/SCRIPTS/ANALYSIS/do_analysis.py", line 29, in <module>
    for line in open(dir+"/"+test_dir+"/best_posterior.dat"):
IOError: [Errno 2] No such file or directory: 'RESULTS_NOLINKER/testdir1/best_posterior.dat'
E
======================================================================
ERROR: Test with linker flexibility
----------------------------------------------------------------------
Traceback (most recent call last):
  File "./test.py", line 30, in test_linker
    self.run_test("linker")
  File "./test.py", line 44, in run_test
    '%s.dat' % testtype])
  File "/usr/lib64/python2.6/subprocess.py", line 505, in check_call
    raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '['DATA/SCRIPTS/ANALYSIS/do_analysis.py', 'RESULTS_LINKER', 'linker.dat']' returned non-zero exit status 1

======================================================================
ERROR: Test without linker flexibility
----------------------------------------------------------------------
Traceback (most recent call last):
  File "./test.py", line 34, in test_nolinker
    self.run_test("nolinker")
  File "./test.py", line 44, in run_test
    '%s.dat' % testtype])
  File "/usr/lib64/python2.6/subprocess.py", line 505, in check_call
    raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '['DATA/SCRIPTS/ANALYSIS/do_analysis.py', 'RESULTS_NOLINKER', 'nolinker.dat']' returned non-zero exit status 1

----------------------------------------------------------------------
Ran 2 tests in 1438.755s

FAILED (errors=2)
Build information
