IMP systems

Modeling of the phosphodiesterase (PDE6) [more...]

This system (using these input files) was tested but does not work with:

MODELLER version 9.12
IMP develop branch (2013-06-24), revision 042f7bb22a (built with all checks turned on)

Detailed test information

test.py FAILED with code 1 (took 11 minutes) and stderr:

.WARNING: set_model is deprecated.
WARNING: Use the constructor that takes a model.
WARNING: get_input_containers is deprecated.
WARNING: Use get_inputs()
WARNING: get_input_particles is deprecated.
WARNING: Use get_inputs()
WARNING: Restraint is deprecated.
WARNING: You should pass the model to the Restraint constructor. Constructing linker
WARNING: Restraint is deprecated.
WARNING: You should pass the model to the Restraint constructor. Constructing xlms
WARNING: Restraint is deprecated.
WARNING: You should pass the model to the Restraint constructor. Constructing excluded_volume
WARNING: Restraint is deprecated.
WARNING: You should pass the model to the Restraint constructor. Constructing symm_excluded_volume
WARNING: Restraint is deprecated.
WARNING: You should pass the model to the Restraint constructor. Constructing template_restraint
WARNING: evaluate is deprecated.
WARNING: Use index-based evaluation instead
Traceback (most recent call last):
  File "./run_modeling.py", line 753, in <module>
    rc.setup_and_run(test)
  File "./run_modeling.py", line 687, in setup_and_run
    self.test_scores()          
  File "./run_modeling.py", line 408, in test_scores
    aae(float(initialscores["Total_Score"]),output["Total_Score"],7,"Total_Score: test failed")
  File "/usr/lib64/python2.6/site-packages/numpy/testing/utils.py", line 567, in assert_approx_equal
    raise AssertionError(msg)
AssertionError: 
Items are not equal to 7 significant digits: Total_Score: test failed
 ACTUAL: 31.125884634500103
 DESIRED: 33.449655126303398
E.
======================================================================
ERROR: Test the integrative modeling script
----------------------------------------------------------------------
Traceback (most recent call last):
  File "./test.py", line 20, in test_integrative_modeling
    cwd='integrative_modeling')
  File "/usr/lib64/python2.6/subprocess.py", line 502, in check_call
    raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '['./run_modeling.py', 'test']' returned non-zero exit status 1

----------------------------------------------------------------------
Ran 3 tests in 689.514s

FAILED (errors=1)

Build information