IMP systems

Modeling of the phosphodiesterase (PDE6) [more...]

This system (using these input files) was tested but does not work with:

MODELLER version 9.12
IMP develop branch (2014-04-02), revision c794dbddf5 (fast build)

Detailed test information

test.py FAILED with code 1 (took 30 minutes) and stderr:

.Traceback (most recent call last):
  File "./run_modeling.py", line 766, in <module>
    rc.setup_and_run(test)
  File "./run_modeling.py", line 606, in setup_and_run
    mc=self.setup_rigid_body_MonteCarlo(0.1,self.delta_r,self.delta_a,self.delta_dr,False)
  File "./run_modeling.py", line 330, in setup_rigid_body_MonteCarlo
    if (not IMP.core.RigidMember.particle_is_instance(ps)):
AttributeError: type object 'RigidMember' has no attribute 'particle_is_instance'
ETraceback (most recent call last):
  File "./run_modeling.py", line 766, in <module>
    rc.setup_and_run(test)
  File "./run_modeling.py", line 606, in setup_and_run
    mc=self.setup_rigid_body_MonteCarlo(0.1,self.delta_r,self.delta_a,self.delta_dr,False)
  File "./run_modeling.py", line 330, in setup_rigid_body_MonteCarlo
    if (not IMP.core.RigidMember.particle_is_instance(ps)):
AttributeError: type object 'RigidMember' has no attribute 'particle_is_instance'
E.
======================================================================
ERROR: Test the entire integrative modeling run
----------------------------------------------------------------------
Traceback (most recent call last):
  File "./test.py", line 33, in test_integrative_modeling
    cwd='integrative_modeling')
  File "/usr/lib64/python2.6/subprocess.py", line 505, in check_call
    raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '['./run_modeling.py']' returned non-zero exit status 1

======================================================================
ERROR: Test the integrative modeling scoring
----------------------------------------------------------------------
Traceback (most recent call last):
  File "./test.py", line 21, in test_integrative_modeling_score
    cwd='integrative_modeling')
  File "/usr/lib64/python2.6/subprocess.py", line 505, in check_call
    raise CalledProcessError(retcode, cmd)
CalledProcessError: Command '['./run_modeling.py', 'test']' returned non-zero exit status 1

----------------------------------------------------------------------
Ran 4 tests in 1803.120s

FAILED (errors=2)

Build information