Build information

SAXS Merge benchmark

Benchmark of the SAXS Merge method [more...]

This system (using these input files) was tested but does not work with:

• IMP develop branch (2016-03-08), revision 473058def0 (built with only usage checks turned on)

Detailed test information

• test_benchmark.py FAILED with code 1 (took 3 hours) and stderr:
  

  /salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  /salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  /salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  in 682.267s ... ./salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  Traceback (most recent call last):
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2446, in <module>
      main()
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2439, in main
      profiles, args = globals()[step](profiles, args)
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2093, in fitting
      mean_function=mean_function)
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 1529, in find_fit
      raise FittingError("Error while fitting! All Bayes factors are "
  __main__.FittingError: Error while fitting! All Bayes factors are undefined.
  Change initial parameters or disable model comparison.
  in 211.829s ... E/salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  Traceback (most recent call last):
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2446, in <module>
      main()
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2439, in main
      profiles, args = globals()[step](profiles, args)
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2093, in fitting
      mean_function=mean_function)
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 1529, in find_fit
      raise FittingError("Error while fitting! All Bayes factors are "
  __main__.FittingError: Error while fitting! All Bayes factors are undefined.
  Change initial parameters or disable model comparison.
  in 538.627s ... E/salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  /salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  in 688.230s ... ./salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  /salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  Could not find/open font when opening font "arial", using internal non-scalable font
  in 1232.830s ... ./salilab/diva1/programs/x86_64linux/numpy-1.8.2/lib64/python2.6/site-packages/numpy/oldnumeric/__init__.py:11: ModuleDeprecationWarning: The oldnumeric module will be dropped in Numpy 1.9
    warnings.warn(_msg, ModuleDeprecationWarning)
  Traceback (most recent call last):
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2446, in <module>
      main()
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2439, in main
      profiles, args = globals()[step](profiles, args)
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 2093, in fitting
      mean_function=mean_function)
    File "/salilab/diva1/home/imp/develop/20160308-473058d/bin/release64/saxs_merge", line 1529, in find_fit
      raise FittingError("