On Apr 25, 2011, at 2:36 PM, Ben Webb wrote:
> On 04/25/2011 02:31 PM, Daniel Russel wrote:
>> - ~drussel/production/hdf5: the version of hdf5 installed on the
>> cluster is old and has several important differences from more recent
>> versions. Backporting the hdf5 code looks to be a bit painful and
>> messy and hdf5 is very easy to build.
>
> Yes, it's trivial to upgrade the version installed on the cluster. You
> could have simply asked. ;) I will do so.
Yeah, but it was pretty trivial to build oneself and I assumed that the cluster was as up to date as was easy :-) Anyway, upgrading it is, of course, better.
>
>> - ~drussel/production/bullet: the physics based optimizer, it is not
>> installed in the cluster - ~drussel/production/CGAL: the geometry
>> library, it is not installed in the cluster
>
> Both bullet and CGAL are indeed installed on the interactive nodes. You
> simply need to copy the shared libraries to a suitable shared location
> if you want to run bullet- or CGAL-enabled IMP on the cluster. For
> example, the nightly builds already do so: see
> /salilab/diva1/home/imp/nightly/lib/x86_64-intel8/ for 64-bit DSOs.
They are not installed on the optint nodes, for example.