- ~drussel/production/hdf5: the version of hdf5 installed on the
cluster is old and has several important differences from more recent
versions. Backporting the hdf5 code looks to be a bit painful and
messy and hdf5 is very easy to build.
Yes, it's trivial to upgrade the version installed on the cluster. You
could have simply asked. ;) I will do so.
- ~drussel/production/bullet: the physics based optimizer, it is not
installed in the cluster - ~drussel/production/CGAL: the geometry
library, it is not installed in the cluster
Both bullet and CGAL are indeed installed on the interactive nodes. You
simply need to copy the shared libraries to a suitable shared location
if you want to run bullet- or CGAL-enabled IMP on the cluster. For
example, the nightly builds already do so: see
/salilab/diva1/home/imp/nightly/lib/x86_64-intel8/ for 64-bit DSOs.
Ben
--
http://salilab.org/~ben/
"It is a capital mistake to theorize before one has data."
- Sir Arthur Conan Doyle