Subject: Re: [IMP-dev] [EMBED-dev] Merge of EMBED into IMP
From: Keren Lasker <>
Date: Tue, 28 Apr 2009 07:48:05 -0700
Reply-to: List for IMP development <>
frido - can you send the python lines you use to run the procedure ?
On Apr 28, 2009, at 7:44 AM, Friedrich Foerster wrote:
i recompiled the code taking out build="fast". then the unit tests
actually work. however, imp is way too slow to do any serious
calculations with the default-whatever-it-does.
apparently, what is happening is that the parameter setting in
SampledDensityMap::resample fails. when the code tries to use the
unset pointers, the unit test fails with a segmentation fault.
it would be great if an imp expert could look into that.
On Apr 28, 2009, at 4:11 PM, Ben Webb wrote:
Friedrich Foerster wrote:
however, currently IMP.em/EMBED is not working anymore, at least for
me. the essential unit test test_em_fit.py does not work on my
machine. apparently, the parameter initialization does not work. the
test crashes with a segmentation fault.
That's odd - it works just fine here on all of our test machines. You
should try a fresh checkout - perhaps something got messed up in your
copy of IMP. If that still doesn't work, build with 'scons