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Re: [IMP-dev] [EMBED-dev] Merge of EMBED into IMP

frido - can you send the python lines you use to run the procedure ?
On Apr 28, 2009, at 7:44 AM, Friedrich Foerster wrote:

i recompiled the code taking out build="fast". then the unit tests actually work. however, imp is way too slow to do any serious calculations with the default-whatever-it-does. apparently, what is happening is that the parameter setting in SampledDensityMap::resample fails. when the code tries to use the unset pointers, the unit test fails with a segmentation fault.
it would be great if an imp expert could look into that.



On Apr 28, 2009, at 4:11 PM, Ben Webb wrote:

Friedrich Foerster wrote:
however, currently IMP.em/EMBED is not working anymore, at least for
me. the essential unit test test_em_fit.py does not work on my
machine. apparently, the parameter initialization does not work. the
test crashes with a segmentation fault.

That's odd - it works just fine here on all of our test machines. You
should try a fresh checkout - perhaps something got messed up in your
copy of IMP. If that still doesn't work, build with 'scons build=debug'
then run the test through gdb to figure out where it's crashing. What
kind of machine are you running on?

"It is a capital mistake to theorize before one has data."
	- Sir Arthur Conan Doyle
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Friedrich Foerster
Max-Planck Institut fuer Biochemie
Am Klopferspitz 18
D-82152 Martinsried

Tel: +49 89 8578 2651
Fax: +49 89 8578 2641


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