Re: [IMP-dev] [EMBED-dev] Merge of EMBED into IMP

[Friedrich Foerster <>]

i recompiled the code taking out build="fast". then the unit tests  
actually work. however, imp is way too slow to do any serious  
calculations with the default-whatever-it-does.
apparently, what is happening is that the parameter setting in  
SampledDensityMap::resample fails. when the code tries to use the  
unset pointers, the unit test fails with a segmentation fault.
it would be great if an imp expert could look into that.

thanks

frido


On Apr 28, 2009, at 4:11 PM, Ben Webb wrote:

> Friedrich Foerster wrote:
> > however, currently IMP.em/EMBED is not working anymore, at least for
> > me. the essential unit test test_em_fit.py does not work on my
> > machine. apparently, the parameter initialization does not work. the
> > test crashes with a segmentation fault.
>
> That's odd - it works just fine here on all of our test machines. You
> should try a fresh checkout - perhaps something got messed up in your
> copy of IMP. If that still doesn't work, build with 'scons  
> build=debug'
> then run the test through gdb to figure out where it's crashing. What
> kind of machine are you running on?
>
> 	Ben
> --
>                       http://salilab.org/~ben/
> "It is a capital mistake to theorize before one has data."
> 	- Sir Arthur Conan Doyle
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>
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--

Friedrich Foerster
Max-Planck Institut fuer Biochemie
Am Klopferspitz 18
D-82152 Martinsried

Tel: +49 89 8578 2651
Fax: +49 89 8578 2641



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