| add_contribution(const ParticleIndexPair &ppi, const ParticleIndexPair &sigmas) | IMP::isd::AtomicCrossLinkMSRestraint | |
| add_score_and_derivatives(ScoreAccumulator sa) const | IMP::Restraint | |
| AtomicCrossLinkMSRestraint(IMP::Model *m, double length, ParticleIndex psi, Float slope=0.0, bool part_of_log_score=false, std::string name="AtomicCrossLinkMSRestraint%1%") | IMP::isd::AtomicCrossLinkMSRestraint | |
| clear_caches() | IMP::Object | virtual |
| create_current_decomposition() const | IMP::Restraint | |
| create_decomposition() const | IMP::Restraint | |
| create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::Restraint | virtual |
| do_add_score_and_derivatives(ScoreAccumulator sa) const | IMP::Restraint | protectedvirtual |
| do_create_current_decomposition() const | IMP::Restraint | protectedvirtual |
| do_create_decomposition() const | IMP::Restraint | protectedvirtual |
| do_destroy() | IMP::Object | protectedvirtual |
| do_get_inputs() const | IMP::isd::AtomicCrossLinkMSRestraint | virtual |
| do_get_interactions() const | IMP::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::Restraint | protectedvirtual |
| evaluate_for_contributions(Ints c, DerivativeAccumulator *accum) const | IMP::isd::AtomicCrossLinkMSRestraint | |
| get_check_level() const (defined in IMP::Object) | IMP::Object | |
| get_contribution(int i) const | IMP::isd::AtomicCrossLinkMSRestraint | |
| get_contribution_sigmas(int i) const | IMP::isd::AtomicCrossLinkMSRestraint | |
| get_has_dependencies() const | IMP::ModelObject | |
| get_has_required_score_states() const | IMP::ModelObject | |
| get_inputs() const | IMP::ModelObject | |
| get_interactions() const | IMP::ModelObject | |
| get_last_score() const | IMP::Restraint | virtual |
| get_log_level() const (defined in IMP::Object) | IMP::Object | |
| get_maximum_score() const (defined in IMP::Restraint) | IMP::Restraint | |
| get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
| get_name() const (defined in IMP::Object) | IMP::Object | |
| get_number_of_contributions() const | IMP::isd::AtomicCrossLinkMSRestraint | |
| get_outputs() const | IMP::ModelObject | |
| get_psi() const | IMP::isd::AtomicCrossLinkMSRestraint | |
| get_required_score_states() const | IMP::ModelObject | |
| get_score() const | IMP::Restraint | |
| get_type_name() const (defined in IMP::isd::AtomicCrossLinkMSRestraint) | IMP::isd::AtomicCrossLinkMSRestraint | virtual |
| get_version_info() const | IMP::isd::AtomicCrossLinkMSRestraint | virtual |
| get_was_good() const | IMP::Restraint | |
| get_weight() const (defined in IMP::Restraint) | IMP::Restraint | |
| handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
| ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
| NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
| Object(std::string name) | IMP::Object | protected |
| Restraint(Model *m, std::string name) | IMP::Restraint | |
| set_check_level(CheckLevel l) | IMP::Object | |
| set_has_dependencies(bool tf) | IMP::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::ModelObject | |
| set_log_level(LogLevel l) | IMP::Object | |
| set_maximum_score(double s) (defined in IMP::Restraint) | IMP::Restraint | |
| set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
| set_part_of_log_score(bool hey) (defined in IMP::isd::AtomicCrossLinkMSRestraint) | IMP::isd::AtomicCrossLinkMSRestraint | |
| set_slope(Float slope) (defined in IMP::isd::AtomicCrossLinkMSRestraint) | IMP::isd::AtomicCrossLinkMSRestraint | |
| set_was_used(bool tf) const | IMP::Object | |
| set_weight(Float weight) (defined in IMP::Restraint) | IMP::Restraint | |
| show(std::ostream &out) const (defined in IMP::isd::AtomicCrossLinkMSRestraint) | IMP::isd::AtomicCrossLinkMSRestraint | |
| unprotected_evaluate(IMP::DerivativeAccumulator *accum) const (defined in IMP::isd::AtomicCrossLinkMSRestraint) | IMP::isd::AtomicCrossLinkMSRestraint | virtual |
| ~AtomicCrossLinkMSRestraint() (defined in IMP::isd::AtomicCrossLinkMSRestraint) | IMP::isd::AtomicCrossLinkMSRestraint | protectedvirtual |
| ~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
| ~Object() (defined in IMP::Object) | IMP::Object | virtual |
