add_score_and_derivatives(ScoreAccumulator sa) const | IMP::Restraint | |
clear_caches() | IMP::Object | virtual |
create_current_decomposition() const | IMP::Restraint | |
create_decomposition() const | IMP::Restraint | |
create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::Restraint | virtual |
do_add_score_and_derivatives(ScoreAccumulator sa) const | IMP::Restraint | protectedvirtual |
do_create_current_decomposition() const | IMP::Restraint | protectedvirtual |
do_create_decomposition() const | IMP::Restraint | protectedvirtual |
do_destroy() | IMP::Object | protectedvirtual |
do_get_inputs() const | IMP::core::RigidBodyUmbrella | protectedvirtual |
do_get_interactions() const | IMP::ModelObject | protectedvirtual |
do_get_outputs() const | IMP::Restraint | protectedvirtual |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_has_dependencies() const | IMP::ModelObject | |
get_has_required_score_states() const | IMP::ModelObject | |
get_inputs() const | IMP::ModelObject | |
get_interactions() const | IMP::ModelObject | |
get_last_score() const | IMP::Restraint | virtual |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_maximum_score() const (defined in IMP::Restraint) | IMP::Restraint | |
get_model() const (defined in IMP::ModelObject) | IMP::ModelObject | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_outputs() const | IMP::ModelObject | |
get_required_score_states() const | IMP::ModelObject | |
get_score() const | IMP::Restraint | |
get_type_name() const (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | virtual |
get_version_info() const | IMP::core::RigidBodyUmbrella | virtual |
get_was_good() const | IMP::Restraint | |
get_weight() const (defined in IMP::Restraint) | IMP::Restraint | |
get_x() const (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | |
get_x0() const (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | |
handle_set_has_required_score_states(bool) | IMP::ModelObject | protectedvirtual |
ModelObject(Model *m, std::string name) (defined in IMP::ModelObject) | IMP::ModelObject | |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
Restraint(Model *m, std::string name) | IMP::Restraint | |
RigidBodyUmbrella(Model *m, ParticleIndex pi, ParticleIndex ref, Floats x0, double alpha, double k, std::string name="RigidBodyUmbrella %1%") | IMP::core::RigidBodyUmbrella | |
RigidBodyUmbrella(Model *m, ParticleIndex pi, ParticleIndex ref, double lambda, Floats x1, Floats x2, double alpha, double k, std::string name="RigidBodyUmbrella %1%") | IMP::core::RigidBodyUmbrella | |
set_alpha(double alpha) (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | |
set_check_level(CheckLevel l) | IMP::Object | |
set_has_dependencies(bool tf) | IMP::ModelObject | |
set_has_required_score_states(bool tf) | IMP::ModelObject | |
set_k(double k) (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | |
set_log_level(LogLevel l) | IMP::Object | |
set_maximum_score(double s) (defined in IMP::Restraint) | IMP::Restraint | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_was_used(bool tf) const | IMP::Object | |
set_weight(Float weight) (defined in IMP::Restraint) | IMP::Restraint | |
set_x0(Floats x0) (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | |
set_x0(double lambda, Floats x1, Floats x2) (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
unprotected_evaluate(IMP::DerivativeAccumulator *accum) const (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | protected |
~ModelObject() (defined in IMP::ModelObject) | IMP::ModelObject | |
~Object() (defined in IMP::Object) | IMP::Object | virtual |
~RigidBodyUmbrella() (defined in IMP::core::RigidBodyUmbrella) | IMP::core::RigidBodyUmbrella | protectedvirtual |