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IMP Reference Guide  2.8.0
The Integrative Modeling Platform
IMP::atom::Residue Member List

This is the complete list of members for IMP::atom::Residue, including all inherited members.

add_child(Hierarchy o)IMP::atom::Hierarchy
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
clear_children() (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
create_clone(Hierarchy d)IMP::atom::Hierarchyrelated
create_clone_one(Hierarchy d)IMP::atom::Hierarchyrelated
create_fragment(const Hierarchies &ps)IMP::atom::Hierarchyrelated
Decorator(Model *m, ParticleIndex pi) (defined in IMP::Decorator)IMP::Decoratorprotected
Decorator() (defined in IMP::Decorator)IMP::Decoratorprotected
Decorator(ParticleAdaptor p) (defined in IMP::Decorator)IMP::Decoratorexplicitprotected
DecoratorTraits typedef (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
destroy(Hierarchy d)IMP::atom::Hierarchyrelated
get_bounding_box(const Hierarchy &h)IMP::atom::Hierarchyrelated
get_bounding_sphere(const Hierarchy &h)IMP::atom::Hierarchyrelated
get_by_type(Hierarchy mhd, GetByType t)IMP::atom::Hierarchyrelated
get_child(unsigned int i) const IMP::atom::Hierarchy
get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_child_index() const IMP::core::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children_indexes() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_decorator_traits() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_default_decorator_traits() (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
get_default_traits()IMP::core::Hierarchystatic
get_index() const IMP::atom::Residue
get_index_key() (defined in IMP::atom::Residue)IMP::atom::Residuestatic
get_insertion_code() const (defined in IMP::atom::Residue)IMP::atom::Residue
get_insertion_code_key() (defined in IMP::atom::Residue)IMP::atom::Residuestatic
get_internal_bonds(Hierarchy mhd)IMP::atom::Hierarchyrelated
get_is_dna() const (defined in IMP::atom::Residue)IMP::atom::Residue
get_is_heterogen(Hierarchy h)IMP::atom::Hierarchyrelated
get_is_protein() const (defined in IMP::atom::Residue)IMP::atom::Residue
get_is_rna() const (defined in IMP::atom::Residue)IMP::atom::Residue
get_is_setup(const IMP::ParticleAdaptor &p) (defined in IMP::atom::Residue)IMP::atom::Residuestatic
get_is_setup(Model *m, ParticleIndex pi) (defined in IMP::atom::Residue)IMP::atom::Residuestatic
get_is_setup(const IMP::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::get_is_setup(Model *, ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits())IMP::core::Hierarchystatic
get_is_valid(bool print_info=false) const IMP::atom::Hierarchy
IMP::core::Hierarchy::get_is_valid() const IMP::Decorator
get_leaves(Hierarchy h)IMP::atom::Hierarchyrelated
get_leaves(const Hierarchies &h)IMP::atom::Hierarchyrelated
get_model() const IMP::Decorator
get_number_of_children() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_parent() const IMP::atom::Hierarchy
get_particle() const IMP::Decorator
get_particle_index() const IMP::Decorator
get_residue(Hierarchy mhd, unsigned int index)IMP::atom::Hierarchyrelated
get_residue_type() const (defined in IMP::atom::Residue)IMP::atom::Residue
get_residue_type_key() (defined in IMP::atom::Residue)IMP::atom::Residuestatic
get_root(Hierarchy h)IMP::atom::Hierarchyrelated
get_traits()IMP::atom::Hierarchystatic
Hierarchy(Model *m, ParticleIndex pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy(ParticleAdaptor pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy()IMP::atom::Hierarchy
Hierarchy(IMP::core::Hierarchy h)IMP::atom::Hierarchyexplicit
Hierarchy(::IMP::Model *m,::IMP::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Hierarchy(const IMP::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchyexplicit
operator Particle *() const (defined in IMP::Decorator)IMP::Decorator
operator ParticleIndex() const (defined in IMP::Decorator)IMP::Decorator
operator->() const (defined in IMP::Decorator)IMP::Decorator
remove_child(unsigned int i) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Residue() (defined in IMP::atom::Residue)IMP::atom::Residue
Residue(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::atom::Residue)IMP::atom::Residue
Residue(const IMP::ParticleAdaptor &d) (defined in IMP::atom::Residue)IMP::atom::Residueexplicit
set_index(Int t)IMP::atom::Residue
set_insertion_code(char insertion_code) (defined in IMP::atom::Residue)IMP::atom::Residue
set_residue_type(ResidueType t)IMP::atom::Residue
setup_particle(Model *m, ParticleIndex pi, ResidueType t, int index, int insertion_code)IMP::atom::Residuestatic
setup_particle(IMP::ParticleAdaptor decorator, ResidueType t, int index, int insertion_code) (defined in IMP::atom::Residue)IMP::atom::Residuestatic
setup_particle(Model *m, ParticleIndex pi, ResidueType t, int index)IMP::atom::Residuestatic
setup_particle(IMP::ParticleAdaptor decorator, ResidueType t, int index) (defined in IMP::atom::Residue)IMP::atom::Residuestatic
setup_particle(Model *m, ParticleIndex pi, ResidueType t)IMP::atom::Residuestatic
setup_particle(IMP::ParticleAdaptor decorator, ResidueType t)IMP::atom::Residuestatic
setup_particle(Model *m, ParticleIndex pi, Residue other)IMP::atom::Residuestatic
setup_particle(IMP::ParticleAdaptor decorator, Residue other)IMP::atom::Residuestatic
IMP::atom::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor())IMP::atom::Hierarchystatic
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(Model *m, ParticleIndex pi, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
show(std::ostream &out=std::cout) const (defined in IMP::atom::Residue)IMP::atom::Residue
IMP::atom::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout)IMP::atom::Hierarchyrelated
Value() (defined in IMP::Value)IMP::Valueprotected