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IMP Reference Guide  2.6.2
The Integrative Modeling Platform
SingletonContainer.h
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1 // Autogenerated by ../../../../tmp/nightly-build-86896/imp-2.6.2/tools/build/make_containers.py
2 // from ../../../../tmp/nightly-build-86896/imp-2.6.2/tools/build/container_templates/kernel/ClassnameContainer.h
3 // Do not edit - any changes will be lost!
4 
5 /**
6  * \file IMP/SingletonContainer.h
7  * \brief A container for Singletons.
8  *
9  * Copyright 2007-2016 IMP Inventors. All rights reserved.
10  */
11 
12 #ifndef IMPKERNEL_SINGLETON_CONTAINER_H
13 #define IMPKERNEL_SINGLETON_CONTAINER_H
14 
15 #include <IMP/kernel_config.h>
16 #include "internal/IndexingIterator.h"
17 #include "Particle.h"
18 #include "container_base.h"
19 #include "internal/container_helpers.h"
20 #include "DerivativeAccumulator.h"
21 #include "base_types.h"
22 #include <IMP/ref_counted_macros.h>
23 #include <IMP/check_macros.h>
24 #include <IMP/Pointer.h>
25 #include <IMP/InputAdaptor.h>
26 #include <IMP/utility_macros.h>
27 #include <IMP/deprecation_macros.h>
28 #include <algorithm>
29 
30 IMPKERNEL_BEGIN_NAMESPACE
31 class SingletonModifier;
32 class SingletonScore;
33 
34 //! A shared container for Singletons
35 /** Stores a shared collection of Singletons.
36  */
37 class IMPKERNELEXPORT SingletonContainer : public Container {
38  public:
39  typedef Particle* ContainedType;
45 
46  //! Just use apply() in the base class
47  void apply_generic(const SingletonModifier *m) const;
48 
49  //! Apply a SingletonModifier to the contents
50  void apply(const SingletonModifier *sm) const;
51 
52  /** Get all the indexes that might possibly be contained in the
53  container, useful with dynamic containers. For example,
54  with a container::ClosePairContainer, this is the list
55  of all pairs taken from input list (those that are far apart
56  in addition to those that are close).
57  */
58  virtual ParticleIndexes get_range_indexes() const = 0;
59 
60  const ParticleIndexes &get_contents() const {
61  if (get_provides_access())
62  return get_access();
63  else {
64  std::size_t nhash = get_contents_hash();
65  if (contents_hash_ != nhash || !cache_initialized_) {
66  contents_hash_ = nhash;
67  cache_initialized_ = true;
68  contents_cache_ = get_indexes();
69  }
70  return contents_cache_;
71  }
72  }
73 
74  /** Get all the indexes contained in the container.
75 
76  This should be protected but isn't for compatibility reasons.
77 
78  External callers should use get_contents().
79  */
80  virtual ParticleIndexes get_indexes() const = 0;
81 
82 #ifndef IMP_DOXYGEN
83 
84  ParticlesTemp get() const {
85  return IMP::internal::get_particle(get_model(), get_indexes());
86  }
87 
88  Particle* get(unsigned int i) const {
89  return IMP::internal::get_particle(get_model(), get_indexes()[i]);
90  }
91  unsigned int get_number() const { return get_indexes().size(); }
92 #ifndef SWIG
93  bool get_provides_access() const;
94  virtual const ParticleIndexes &get_access() const {
95  IMP_THROW("Object not implemented properly.", IndexException);
96  }
97 
98  template <class Functor>
99  Functor for_each(Functor f) {
101  // use boost range instead
102  return std::for_each(vs.begin(), vs.end(), f);
103  }
104 
105 #endif
106 #endif
107 
108  /** \deprecated_at{2.1} Use get_indexes() instead.
109  */
111 
112  /** \deprecated_at{2.1}Use get_indexes() instead and thing about using the
113  IMP_CONTAINER_FOREACH() macro.*/
114  IMPKERNEL_DEPRECATED_METHOD_DECL(2.1)
115  Particle* get_particle(unsigned int i) const;
116 
117  protected:
119  std::string name = "SingletonContainer %1%");
120 
121  virtual void do_apply(const SingletonModifier *sm) const = 0;
122  virtual bool do_get_provides_access() const { return false; }
123 
125 
126  private:
127  mutable std::size_t contents_hash_;
128  mutable ParticleIndexes contents_cache_;
129  mutable bool cache_initialized_;
130 };
131 
132 /** This class allows either a list or a container to be
133  accepted as input.
134 */
135 class IMPKERNELEXPORT SingletonContainerAdaptor :
136 #if !defined(SWIG) && !defined(IMP_DOXYGEN)
137  public Pointer<SingletonContainer>
138 #else
139  public InputAdaptor
140 #endif
141  {
143 
144  public:
146 
147  /**
148  Constructs the adaptor pointing to c (so if the contents of c are changed
149  dynamically, so do the contents of the adaptor, and vice versa)
150  */
152 
153  /**
154  Constructs the adaptor pointing to c (so if the contents of c are changed
155  dynamically, so do the contents of the adaptor, and vice versa)
156  */
157  template <class C>
158  SingletonContainerAdaptor(IMP::internal::PointerBase<C> c)
159  : P(c) {}
160 
161  /**
162  Adapts the non-empty list t to SingletonContainer
163 
164  @param t a non-empty list of ParticlesTemp
165  */
167 
168  /** Set the name of the resulting container if it is currently the
169  default value. */
170  void set_name_if_default(std::string name);
171 };
172 
173 IMPKERNEL_END_NAMESPACE
174 
175 #endif /* IMPKERNEL_SINGLETON_CONTAINER_H */
A base class for modifiers of ParticlesTemp.
Control display of deprecation information.
Various general useful macros for IMP.
Basic types used by IMP.
Class for adding derivatives from restraints to the model.
std::size_t get_contents_hash() const
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
A smart pointer to a reference counted object.
Definition: Pointer.h:87
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:72
Basic types used by IMP.
Various general useful macros for IMP.
An exception for a request for an invalid member of a container.
Definition: exception.h:157
A shared container for Singletons.
Classes to handle individual model particles. (Note that implementation of inline functions is in int...
Abstract base class for containers of particles.
#define IMP_THROW(message, exception_name)
Throw an exception with a message.
Definition: check_macros.h:50
A nullptr-initialized pointer to an IMP Object.
Exception definitions and assertions.
Class to handle individual model particles.
Definition: Particle.h:37
#define IMP_REF_COUNTED_NONTRIVIAL_DESTRUCTOR(Name)
SingletonContainerAdaptor(IMP::internal::PointerBase< C > c)
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Abstract class for containers of particles.