ProjectionParameters.h

Go to the documentation of this file.

/**
 *  \file IMP/em2d/ProjectionParameters.h
 *  \brief Decorator for projection parameters
 *  Copyright 2007-2016 IMP Inventors. All rights reserved.
*/

#ifndef IMPEM2D_PROJECTION_PARAMETERS_H
#define IMPEM2D_PROJECTION_PARAMETERS_H

#include "IMP/em2d/em2d_config.h"
#include "IMP/algebra/Vector3D.h"
#include "IMP/algebra/Vector2D.h"
#include "IMP/algebra/Rotation3D.h"
#include "IMP/Decorator.h"
#include "IMP/decorator_macros.h"
#include "IMP/ScoreState.h"

IMPEM2D_BEGIN_NAMESPACE

//! Decorator for particles representing the parameters
//! Rotation and translation. In this cases, the translation is the translation
//! to apply to the model in 3D, in order to perform the registration
class IMPEM2DEXPORT ProjectionParameters : public Decorator {
  static void do_setup_particle(Model *m, ParticleIndex pi);

 public:
  IMP_DECORATOR_METHODS(ProjectionParameters, Decorator);
  IMP_DECORATOR_SETUP_0(ProjectionParameters);

  ~ProjectionParameters() {};

  //! Keys of the decorator
  // FloatKeys get_keys();
  static const FloatKeys &get_keys();

  //! ranges for the keys. Only adjust the translations, the rotations are
  //! self adjusted
  void set_proper_ranges_for_keys(
      Model *m, const algebra::Vector3D &min_translation_values,
      const algebra::Vector3D &max_translation_values);

  //! Return true if the particle is a set of projection parameters
  static bool get_is_setup(Model *m, ParticleIndex pi);

  //! Get whether the parameters are optimized
  /** \return true only if all of them are optimized.
    */
  bool get_parameters_optimized() const {
    for (int i = 0; i < 6; ++i) {
      if (get_particle()->get_is_optimized(get_keys()[i]) == false) {
        return false;
      }
    }
    return true;
  }

  algebra::Vector3D get_translation() const {
    return algebra::Vector3D(get_translation_x(), get_translation_y(), 0.0);
  }

  void set_translation(const algebra::Vector3D &v) {
    set_translation_x(v[0]);
    set_translation_y(v[1]);
  }

  algebra::Rotation3D get_rotation() const {
    algebra::Vector4D v(get_quaternion_1(), get_quaternion_2(),
                        get_quaternion_3(), get_quaternion_4());
    // normalize the vector. Given that the numbers generated with
    // simplex are not necessarily a unit vector.
    algebra::Vector4D unit = v.get_unit_vector();
    return algebra::Rotation3D(unit[0], unit[1], unit[2], unit[3]);
  }

  void set_rotation(const algebra::Rotation3D &R) {
    set_quaternion_1(R.get_quaternion()[0]);
    set_quaternion_2(R.get_quaternion()[1]);
    set_quaternion_3(R.get_quaternion()[2]);
    set_quaternion_4(R.get_quaternion()[3]);
  }

  //! Set whether the parameters are optimized
  inline void set_parameters_optimized(bool tf) const {
    for (int i = 0; i < 6; ++i) {
      get_particle()->set_is_optimized(get_keys()[i], tf);
    }
  }

  //! Get and set functions for the parameters
  IMP_DECORATOR_GET_SET(quaternion_1, get_keys()[0], Float, double);
  IMP_DECORATOR_GET_SET(quaternion_2, get_keys()[1], Float, double);
  IMP_DECORATOR_GET_SET(quaternion_3, get_keys()[2], Float, double);
  IMP_DECORATOR_GET_SET(quaternion_4, get_keys()[3], Float, double);
  IMP_DECORATOR_GET_SET(translation_x, get_keys()[4], Float, double);
  IMP_DECORATOR_GET_SET(translation_y, get_keys()[5], Float, double);

 private:
  algebra::Rotation3D rotation_;
  algebra::Vector3D translation_;
};

IMP_DECORATORS(ProjectionParameters, ProjectionParametersList,
               Particles);

//! Score state to give information about the values of a ProjectionParameters
//! Decorator
class IMPEM2DEXPORT ProjectionParametersScoreState : public ScoreState {
 public:
  ProjectionParametersScoreState(Particle *p)
      : ScoreState(p->get_model(), "ProjectionParametersScoreState%1%") {
    proj_params_ = p;
  }
  virtual void do_before_evaluate() IMP_OVERRIDE;
  virtual void do_after_evaluate(DerivativeAccumulator *da) IMP_OVERRIDE;
  virtual ModelObjectsTemp do_get_inputs() const IMP_OVERRIDE;
  virtual ModelObjectsTemp do_get_outputs() const IMP_OVERRIDE;
  IMP_OBJECT_METHODS(ProjectionParametersScoreState);

 private:
  // Particle to store the projection params
  Pointer<Particle> proj_params_;
};

IMPEM2D_END_NAMESPACE

#endif /* IMPEM2D_PROJECTION_PARAMETERS_H */