IMP Reference Guide
2.6.1
The Integrative Modeling Platform
|
Interface to the Modeller comparative modeling package. More...
Interface to the Modeller comparative modeling package.
Functionality includes:
If you want to use IMP with MODELLER, you should use version 9v7 or later. If you installed the MODELLER Linux RPM or Mac package, it should be detected automatically. Make sure that MODELLER is found in your PYTHONPATH
.
Author(s): Ben Webb, Daniel Russel
Maintainer: benmwebb
License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
Publications:
Classes | |
class | BinormalTerm |
A single binormal term in a MultipleBinormalRestraint. More... | |
class | IMPRestraints |
A Modeller restraint which evaluates an IMP scoring function. More... | |
class | ModellerRestraints |
An IMP restraint using all defined Modeller restraints. More... | |
class | ModelLoader |
Read a Modeller model into IMP. More... | |
class | MultipleBinormalRestraint |
Modeller-style multiple binormal (phi/psi) restraint. More... | |
Typedefs | |
typedef IMP::Vector< BinormalTerm > | BinormalTermList |
Functions | |
def | add_soft_sphere_radii |
Add radii to the hierarchy using the Modeller radius library, radii.lib. More... | |
Standard module functions | |
All | |
std::string | get_module_version () |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to one of this module's data files. More... | |
std::string | get_example_path (std::string file_name) |
Return the full path to one of this module's example files. More... | |
Pass or store a set of BinormalTerm .
Definition at line 78 of file MultipleBinormalRestraint.h.
def IMP.modeller.add_soft_sphere_radii | ( | hierarchy, | |
submodel, | |||
scale = 1.0 , |
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filename = None |
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) |
Add radii to the hierarchy using the Modeller radius library, radii.lib.
Each radius is scaled by the given scale (Modeller usually scales radii by a factor of 0.82). submodel specifies the topology submodel, which is the column in radii.lib to use.
Definition at line 842 of file modeller/__init__.py.
std::string IMP::modeller::get_data_path | ( | std::string | file_name | ) |
Return the full path to one of this module's data files.
To read the data file "data_library" that was placed in the data
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::modeller::get_example_path | ( | std::string | file_name | ) |
Return the full path to one of this module's example files.
To read the example file "example_protein.pdb" that was placed in the examples
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.