IMP Reference Guide
2.6.1
The Integrative Modeling Platform
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Several general purpose optimizers from the GNU Scientific Library (GSL). More...
Several general purpose optimizers from the GNU Scientific Library (GSL).
The most useful is probably the IMP::gsl::Simplex optimizer. Note that GSL is licensed under the GPLv3, which requires that all other software linked with it also be licensed under a GPL-compatible license.
The IMP.gsl module requires GSL. It is available as a prebuilt package on all supported platforms. Note that GSL is distributed under the GPL and so cannot be used in C++ applications with certain other dependencies such as CGAL.
Author(s): Daniel Russel
Maintainer: benmwebb
License: GPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.
Publications:
Classes | |
class | ConjugateGradients |
A conjugate gradients optimizer taken from GSL. More... | |
class | GSLOptimizer |
A base class for GSL-based optimizers. More... | |
class | QuasiNewton |
A quasi-Newton optimizer taken from GSL. More... | |
class | Simplex |
A simplex optimizer taken from GSL. More... | |
Typedefs | |
typedef IMP::Vector < IMP::Pointer< GSLOptimizer > > | GSLOptimizers |
typedef IMP::Vector < IMP::WeakPointer < GSLOptimizer > > | GSLOptimizersTemp |
Standard module functions | |
All | |
std::string | get_module_version () |
std::string | get_module_name () |
std::string | get_data_path (std::string file_name) |
Return the full path to one of this module's data files. More... | |
std::string | get_example_path (std::string file_name) |
Return the full path to one of this module's example files. More... | |
typedef IMP::Vector<IMP::Pointer< GSLOptimizer > > IMP::gsl::GSLOptimizers |
Store a set of objects.
Definition at line 56 of file GSLOptimizer.h.
std::string IMP::gsl::get_data_path | ( | std::string | file_name | ) |
Return the full path to one of this module's data files.
To read the data file "data_library" that was placed in the data
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.
std::string IMP::gsl::get_example_path | ( | std::string | file_name | ) |
Return the full path to one of this module's example files.
To read the example file "example_protein.pdb" that was placed in the examples
directory of this module, do something like
This will ensure that the code works both when IMP is installed or if used via the setup_environment.sh
script.