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IMP Reference Guide
2.6.1
The Integrative Modeling Platform
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Sample best solutions using BranchAndBound. More...
#include <IMP/domino/BranchAndBoundSampler.h>
Inheritance diagram for IMP::domino::BranchAndBoundSampler:Sample best solutions using BranchAndBound.
Find all good configurations of the model using branch and bound. Searches are truncated when the score is worse than the the thresholds in the Sampler or when two particles with the same ParticlesState are assigned the same state.
Definition at line 27 of file BranchAndBoundSampler.h.
Public Member Functions | |
| BranchAndBoundSampler (Model *m, std::string name="BranchAndBoundSampler %1%") | |
| BranchAndBoundSampler (Model *m, ParticleStatesTable *pst, std::string name="BranchAndBoundSampler %1%") | |
| Assignments | do_get_sample_assignments (const IMP::domino::Subset &known) const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::domino::DiscreteSampler | |
| DiscreteSampler (Model *m, ParticleStatesTable *pst, std::string name) | |
| unsigned int | get_maximum_number_of_assignments () const |
| Assignments | get_sample_assignments (const Subset &s) const |
| void | set_maximum_number_of_assignments (unsigned int mx) |
| void | set_particle_states (Particle *p, ParticleStates *se) |
| void | set_restraints (RestraintsAdaptor rs) |
| Set the Restraints to use in the RestraintScoreSubsetFilterTable. More... | |
| void | set_particle_states_table (ParticleStatesTable *cse) |
| void | set_assignments_table (AssignmentsTable *sst) |
| ParticleStatesTable * | get_particle_states_table () const |
| void | remove_subset_filter_table (SubsetFilterTable *d) |
| void | remove_subset_filter_tables (const SubsetFilterTables &d) |
| void | set_subset_filter_tables (const SubsetFilterTables &ps) |
| void | set_subset_filter_tables_order (const SubsetFilterTables &objs) |
| unsigned int | add_subset_filter_table (SubsetFilterTable *obj) |
| void | add_subset_filter_tables (const SubsetFilterTables &objs) |
| void | clear_subset_filter_tables () |
| unsigned int | get_number_of_subset_filter_tables () const |
| bool | get_has_subset_filter_tables () |
| SubsetFilterTable * | get_subset_filter_table (unsigned int i) const |
| SubsetFilterTables | get_subset_filter_tables () const |
| void | reserve_subset_filter_tables (unsigned int sz) |
| Public Member Functions inherited from IMP::Sampler | |
| Sampler (Model *m, std::string name="Sampler %1%") | |
| ConfigurationSet * | create_sample () const |
| Model * | get_model () const |
| ScoringFunction * | get_scoring_function () const |
| Return the scoring function that is being used. More... | |
| void | set_scoring_function (ScoringFunctionAdaptor sf) |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::domino::DiscreteSampler | |
| virtual ConfigurationSet * | do_sample () const |
| AssignmentsTable * | get_assignments_table_to_use (const SubsetFilterTables &sfts, unsigned int max=std::numeric_limits< int >::max()) const |
| RestraintsTemp | get_restraints () const |
| SubsetFilterTables | get_subset_filter_tables_to_use (const RestraintsTemp &rs, ParticleStatesTable *pst) const |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 35 of file BranchAndBoundSampler.h.
