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IMP Reference Guide  2.6.1
The Integrative Modeling Platform
TransformedDistancePairScore.h
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1 /**
2  * \file IMP/core/TransformedDistancePairScore.h
3  * \brief A score on the distance between a pair of particles
4  * after transforming one.
5  *
6  * Copyright 2007-2016 IMP Inventors. All rights reserved.
7  */
8 
9 #ifndef IMPCORE_TRANSFORMED_DISTANCE_PAIR_SCORE_H
10 #define IMPCORE_TRANSFORMED_DISTANCE_PAIR_SCORE_H
11 
12 #include <IMP/core/core_config.h>
13 #include <IMP/generic.h>
14 #include <IMP/PairScore.h>
15 #include <IMP/UnaryFunction.h>
16 #include <IMP/Pointer.h>
17 #include <IMP/pair_macros.h>
18 
20 
21 IMPCORE_BEGIN_NAMESPACE
22 
23 /** \brief Apply a function to the distance between two particles
24  after transforming the first
25 
26  Apply a transform to the second particle and then apply the unary
27  function to the distance between the transformed particle and the
28  second. This can be used to implement symmetry restraints.
29  */
30 class IMPCOREEXPORT TransformedDistancePairScore : public PairScore {
34 
35  public:
37  const algebra::Transformation3D &transformation);
38 
39  /** Set the transformation object.*/
40  void set_transformation(const algebra::Transformation3D &rot);
41  virtual double evaluate_index(Model *m,
42  const ParticleIndexPair &p,
45  Model *m, const ParticleIndexes &pis) const IMP_OVERRIDE;
48  ;
49 };
50 
51 IMPCORE_END_NAMESPACE
52 
53 #endif /* IMPCORE_TRANSFORMED_DISTANCE_PAIR_SCORE_H */
Abstract class for scoring object(s) of type ParticleIndexPair.
Definition: PairScore.h:37
Simple 3D transformation class.
Macros for various classes.
#define IMP_PAIR_SCORE_METHODS(Name)
Definition: pair_macros.h:25
A class to store an fixed array of same-typed values.
Definition: Array.h:33
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition: object_macros.h:25
Single variable function.
Apply a function to the distance between two particles after transforming the first.
Class for storing model, its restraints, constraints, and particles.
Definition: Model.h:72
Define PairScore.
A smart pointer to a ref-counted Object that is a class member.
Definition: Pointer.h:146
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Simple 3D transformation class.
3D rotation class.
Definition: Rotation3D.h:46
A nullptr-initialized pointer to an IMP Object.
Abstract single variable functor class for score functions.
Definition: UnaryFunction.h:25
virtual double evaluate_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da) const =0
Compute the score and the derivative if needed.
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Class for adding derivatives from restraints to the model.
Various important functionality for implementing decorators.