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IMP Reference Guide
2.6.1
The Integrative Modeling Platform
IMP Manual
Reference Guide
Modules
Classes
Examples
include
IMP
saxs
ProfileClustering.h
Go to the documentation of this file.
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/**
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* \file IMP/saxs/ProfileClustering.h
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* \brief A class for profile clustering
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*
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* \authors Dina Schneidman
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* Copyright 2007-2016 IMP Inventors. All rights reserved.
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*
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*/
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#ifndef IMPSAXS_PROFILE_CLUSTERING_H
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#define IMPSAXS_PROFILE_CLUSTERING_H
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#include <
IMP/saxs/Profile.h
>
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IMPSAXS_BEGIN_NAMESPACE
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/** Class for profile clustering */
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class
IMPSAXSEXPORT
ProfileClustering
{
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public
:
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ProfileClustering
(
Profile
* exp_profile,
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const
Profiles
& profiles,
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double
chi_percentage = 0.3,
double
chi_threshold = 0.0);
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ProfileClustering
(
Profile
* exp_profile,
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const
Profiles
& profiles,
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const
Vector<double>
& scores,
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double
chi_percentage = 0.3,
double
chi_threshold = 0.0);
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const
Vector<Profiles>
& get_clusters()
const
{
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return
clusters_;
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}
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const
Profiles
&
get_representatives
()
const
{
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return
clustered_profiles_;
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}
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private
:
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void
cluster_profiles();
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void
select_representatives();
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private
:
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PointerMember<const Profile>
exp_profile_;
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const
Profiles
profiles_;
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const
Vector<double>
scores_;
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Vector<double>
chi_scores_;
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Profiles
clustered_profiles_;
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Vector<Profiles>
clusters_;
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double
chi_percentage_;
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double
chi_threshold_;
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};
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IMPSAXS_END_NAMESPACE
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#endif
/* IMPSAXS_PROFILE_CLUSTERING_H */
IMP::saxs::Profile
Definition:
Profile.h:31
IMP::Vector
Definition:
Vector.h:42
IMP::PointerMember
A smart pointer to a ref-counted Object that is a class member.
Definition:
Pointer.h:146
IMP::saxs::ProfileClustering
Definition:
ProfileClustering.h:18
Profile.h
A class for profile storing and computation.
IMP::statistics::get_representatives
Ints get_representatives(Embedding *d, PartitionalClustering *pc)