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IMP Reference Guide
2.6.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Modules
Classes
Examples
include
IMP
symmetry
symmetry/RigidBodyMover.h
Go to the documentation of this file.
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/**
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* \file IMP/symmetry/RigidBodyMover.h
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* \brief A mover that keeps a rigid body in a box
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*
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* Copyright 2007-2016 IMP Inventors. All rights reserved.
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*
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*/
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#ifndef IMPSYMMETRY_RIGID_BODY_MOVER_H
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#define IMPSYMMETRY_RIGID_BODY_MOVER_H
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#include "symmetry_config.h"
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#include <
IMP/core/MonteCarlo.h
>
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#include <
IMP/core/MonteCarloMover.h
>
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#include <
IMP/algebra/Vector3D.h
>
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#include <
IMP/algebra/Transformation3D.h
>
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#include <
IMP/SingletonContainer.h
>
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#include <
IMP/core/rigid_bodies.h
>
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IMPSYMMETRY_BEGIN_NAMESPACE
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//! Move a rigid body and keep it in the primitive cell of a periodic lattice
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class
IMPSYMMETRYEXPORT
RigidBodyMover
:
public
core::MonteCarloMover
{
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public
:
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/** The rigid body is rotated and translated to move
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\param[in] d is the master rigid body decorator
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\param[in] ps are the slave particles
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\param[in] max_tr is the maximum translation during a step
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\param[in] max_ang is the maximum rotation angle in radians
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\param[in] ctrs is a list of all cell centers
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\param[in] trs is the list of transformations from primitive to all cells
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*/
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RigidBodyMover
(
core::RigidBody
d,
Particles
ps,
Float
max_tr,
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Float
max_ang,
algebra::Vector3Ds
ctrs,
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algebra::Transformation3Ds
trs);
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protected
:
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virtual
ModelObjectsTemp
do_get_inputs
()
const
IMP_OVERRIDE
;
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virtual
core::MonteCarloMoverResult
do_propose
()
IMP_OVERRIDE
;
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virtual
void
do_reject
()
IMP_OVERRIDE
;
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IMP_OBJECT_METHODS
(
RigidBodyMover
);
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private
:
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core::RigidBody
d_;
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Particles
ps_;
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Float
max_tr_;
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Float
max_ang_;
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algebra::Vector3Ds
ctrs_;
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algebra::Transformation3Ds
trs_;
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Particles
ps_norb_;
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std::vector<core::RigidBody> rbs_;
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algebra::Transformation3D
oldtr_;
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algebra::Vector3Ds
oldcoords_;
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algebra::Transformation3Ds
oldtrs_;
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Particles
get_particles
(
Particles
ps);
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std::vector<core::RigidBody> get_rigid_bodies(
Particles
ps);
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};
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IMPSYMMETRY_END_NAMESPACE
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#endif
/* IMPSYMMETRY_RIGID_BODY_MOVER_H */
IMP::algebra::Transformation3D
Simple 3D transformation class.
Definition:
Transformation3D.h:30
IMP::symmetry::RigidBodyMover
Move a rigid body and keep it in the primitive cell of a periodic lattice.
Definition:
symmetry/RigidBodyMover.h:23
SingletonContainer.h
A container for Singletons.
MonteCarlo.h
Simple Monte Carlo optimizer.
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
IMP::core::MonteCarloMover::do_reject
virtual void do_reject()=0
Implement reset_proposed_move()
IMP::core::MonteCarloMoverResult
Definition:
MonteCarloMover.h:29
IMP::Vector< Pointer< Particle > >
IMP::core::MonteCarloMover
A base class for classes which perturb particles.
Definition:
MonteCarloMover.h:42
rigid_bodies.h
functionality for defining rigid bodies
MonteCarloMover.h
The base class for movers for MC optimization.
IMP::core::MonteCarloMover::do_propose
virtual MonteCarloMoverResult do_propose()=0
Implement propose_move()
Transformation3D.h
Simple 3D transformation class.
IMP::Float
double Float
Basic floating-point value (could be float, double...)
Definition:
types.h:20
Vector3D.h
Simple 3D vector class.
IMP::core::RigidBody
A decorator for a rigid body.
Definition:
rigid_bodies.h:75
IMP::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP_OVERRIDE
#define IMP_OVERRIDE
Cause a compile error if this method does not override a parent method.
Definition:
compiler_macros.h:80