IMP Reference Guide
2.6.0
The Integrative Modeling Platform
|
Class to handle individual model particles. More...
#include <IMP/Particle.h>
Class to handle individual model particles.
At this point a Particle should only be considered as a placeholder for the ParticleIndex, accessed through the get_index() method.
Definition at line 37 of file Particle.h.
Public Member Functions | |
Particle (Model *m, std::string name) | |
Construct a particle and add it to the Model. More... | |
Particle (Model *m) | |
Construct a particle and add it to the Model. More... | |
ParticleIndex | get_index () const |
returns the particle index of this particle in its model More... | |
virtual std::string | get_type_name () const |
virtual ::IMP::VersionInfo | get_version_info () const |
Get information about the module and version of the object. More... | |
Public Member Functions inherited from IMP::ModelObject | |
ModelObject (Model *m, std::string name) | |
bool | get_has_dependencies () const |
Return whether this object has dependencies computed. More... | |
bool | get_has_required_score_states () const |
Return whether score states are computed. More... | |
ModelObjectsTemp | get_inputs () const |
ModelObjectsTemps | get_interactions () const |
Get the interacting sets induced by this ModelObject. More... | |
Model * | get_model () const |
ModelObjectsTemp | get_outputs () const |
const ScoreStatesTemp & | get_required_score_states () const |
Get the score states that are ancestors of this in the dependency graph. More... | |
void | set_has_dependencies (bool tf) |
Either invalidate the dependencies or ensure they are correct. More... | |
void | set_has_required_score_states (bool tf) |
Compute the required score states. More... | |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Protected Member Functions | |
virtual ModelObjectsTemp | do_get_inputs () const |
virtual ModelObjectsTemp | do_get_outputs () const |
Protected Member Functions inherited from IMP::ModelObject | |
virtual ModelObjectsTemps | do_get_interactions () const |
virtual void | handle_set_has_required_score_states (bool) |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
IMP::Particle::Particle | ( | Model * | m, |
std::string | name | ||
) |
Construct a particle and add it to the Model.
|
protectedvirtual |
Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.
Implements IMP::ModelObject.
Definition at line 135 of file Particle.h.
|
protectedvirtual |
Get any Particle, Container or other ModelObjects changed by this during evaluation. This is only useful for ScoreStates, at the moment.
Implements IMP::ModelObject.
Definition at line 138 of file Particle.h.
ParticleIndex IMP::Particle::get_index | ( | ) | const |
returns the particle index of this particle in its model
|
virtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 44 of file Particle.h.