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IMP Reference Guide  2.5.0
The Integrative Modeling Platform
density_analysis.h File Reference

density analysis tools, such as segmentation More...

#include <IMP/em/DensityMap.h>
#include <IMP/multifit/multifit_config.h>
#include <boost/graph/adjacency_list.hpp>
#include <boost/pending/disjoint_sets.hpp>
#include <boost/graph/incremental_components.hpp>
#include <boost/graph/graph_utility.hpp>
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Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::multifit
 Fitting atomic structures into a cryo-electron microscopy density map.
 

Functions

IntsList IMP::multifit::get_connected_components (em::DensityMap *dmap, float threshold, float edge_threshold)
 Return connected components based on density values. More...
 
void IMP::multifit::get_segmentation (em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
 Segment a density map using the anchor graph. More...
 
em::DensityMap * IMP::multifit::remove_background (em::DensityMap *dmap, float threshold, float edge_threshold)
 Returns a map containing all density without the background. More...
 

Detailed Description

density analysis tools, such as segmentation

Copyright 2007-2015 IMP Inventors. All rights reserved.

Definition in file density_analysis.h.