14 from sys 
import version_info 
as _swig_python_version_info
 
   18     import builtins 
as __builtin__
 
   24         strthis = 
"proxy of " + self.this.__repr__()
 
   25     except __builtin__.Exception:
 
   27     return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
 
   30 def _swig_setattr_nondynamic_instance_variable(set):
 
   31     def set_instance_attr(self, name, value):
 
   33             set(self, name, value)
 
   34         elif name == 
"thisown":
 
   36         elif hasattr(self, name) 
and isinstance(getattr(type(self), name), property):
 
   37             set(self, name, value)
 
   39             raise AttributeError(
"You cannot add instance attributes to %s" % self)
 
   40     return set_instance_attr
 
   43 def _swig_setattr_nondynamic_class_variable(set):
 
   44     def set_class_attr(cls, name, value):
 
   45         if hasattr(cls, name) 
and not isinstance(getattr(cls, name), property):
 
   48             raise AttributeError(
"You cannot add class attributes to %s" % cls)
 
   52 def _swig_add_metaclass(metaclass):
 
   53     """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass""" 
   55         return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
 
   59 class _SwigNonDynamicMeta(type):
 
   60     """Meta class to enforce nondynamic attributes (no new attributes) for a class""" 
   61     __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
 
   66 class IMP_SYMMETRY_SwigPyIterator(object):
 
   67     r"""Proxy of C++ swig::IMP_SYMMETRY_SwigPyIterator class.""" 
   69     thisown = property(
lambda x: x.this.own(), 
lambda x, v: x.this.own(v), doc=
"The membership flag")
 
   71     def __init__(self, *args, **kwargs):
 
   72         raise AttributeError(
"No constructor defined - class is abstract")
 
   74     __swig_destroy__ = _IMP_symmetry.delete_IMP_SYMMETRY_SwigPyIterator
 
   77         r"""value(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *""" 
   78         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_value(self)
 
   81         r"""incr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator""" 
   82         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_incr(self, n)
 
   85         r"""decr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator""" 
   86         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_decr(self, n)
 
   88     def distance(self, x):
 
   89         r"""distance(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t""" 
   90         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_distance(self, x)
 
   93         r"""equal(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool""" 
   94         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_equal(self, x)
 
   97         r"""copy(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator""" 
   98         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_copy(self)
 
  101         r"""next(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *""" 
  102         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_next(self)
 
  105         r"""__next__(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *""" 
  106         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___next__(self)
 
  109         r"""previous(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *""" 
  110         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_previous(self)
 
  112     def advance(self, n):
 
  113         r"""advance(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator""" 
  114         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_advance(self, n)
 
  117         r"""__eq__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool""" 
  118         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___eq__(self, x)
 
  121         r"""__ne__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool""" 
  122         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___ne__(self, x)
 
  124     def __iadd__(self, n):
 
  125         r"""__iadd__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator""" 
  126         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___iadd__(self, n)
 
  128     def __isub__(self, n):
 
  129         r"""__isub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator""" 
  130         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___isub__(self, n)
 
  132     def __add__(self, n):
 
  133         r"""__add__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator""" 
  134         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___add__(self, n)
 
  136     def __sub__(self, *args):
 
  138         __sub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator 
  139         __sub__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t 
  141         return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___sub__(self, *args)
 
  146 _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_swigregister(IMP_SYMMETRY_SwigPyIterator)
 
  153 IMP_DEBUG = _IMP_symmetry.IMP_DEBUG
 
  155 IMP_RELEASE = _IMP_symmetry.IMP_RELEASE
 
  157 IMP_SILENT = _IMP_symmetry.IMP_SILENT
 
  159 IMP_PROGRESS = _IMP_symmetry.IMP_PROGRESS
 
  161 IMP_TERSE = _IMP_symmetry.IMP_TERSE
 
  163 IMP_VERBOSE = _IMP_symmetry.IMP_VERBOSE
 
  165 IMP_MEMORY = _IMP_symmetry.IMP_MEMORY
 
  167 IMP_NONE = _IMP_symmetry.IMP_NONE
 
  169 IMP_USAGE = _IMP_symmetry.IMP_USAGE
 
  171 IMP_INTERNAL = _IMP_symmetry.IMP_INTERNAL
 
  173 IMP_KERNEL_HAS_LOG4CXX = _IMP_symmetry.IMP_KERNEL_HAS_LOG4CXX
 
  175 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_symmetry.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
 
  177 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_symmetry.IMP_COMPILER_HAS_DEBUG_VECTOR
 
  179 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_symmetry.IMP_COMPILER_HAS_RANDOM_SHUFFLE
 
  181 IMP_COMPILER_HAS_THREE_WAY = _IMP_symmetry.IMP_COMPILER_HAS_THREE_WAY
 
  183 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_RANDOM
 
  185 IMP_KERNEL_HAS_NUMPY = _IMP_symmetry.IMP_KERNEL_HAS_NUMPY
 
  187 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_symmetry.IMP_KERNEL_HAS_GPERFTOOLS
 
  189 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_symmetry.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
 
  191 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_symmetry.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
 
  193 IMPKERNEL_SHOW_WARNINGS = _IMP_symmetry.IMPKERNEL_SHOW_WARNINGS
 
  197 class _DirectorObjects:
 
  198     """@internal Simple class to keep references to director objects 
  199        to prevent premature deletion.""" 
  202     def register(self, obj):
 
  203         """Take a reference to a director object; will only work for 
  204            refcounted C++ classes""" 
  205         if hasattr(obj, 
'get_ref_count'):
 
  206             self._objects.append(obj)
 
  208         """Only drop our reference and allow cleanup by Python if no other 
  209            Python references exist (we hold 3 references: one in self._objects, 
  210            one in x, and one in the argument list for getrefcount) *and* no 
  211            other C++ references exist (the Python object always holds one)""" 
  212         objs = [x 
for x 
in self._objects 
if sys.getrefcount(x) > 3 \
 
  213                                          or x.get_ref_count() > 1]
 
  217     def get_object_count(self):
 
  218         """Get number of director objects (useful for testing only)""" 
  219         return len(self._objects)
 
  220 _director_objects = _DirectorObjects()
 
  222 class _ostream(object):
 
  223     r"""Proxy of C++ std::ostream class.""" 
  225     thisown = property(
lambda x: x.this.own(), 
lambda x, v: x.this.own(v), doc=
"The membership flag")
 
  227     def __init__(self, *args, **kwargs):
 
  228         raise AttributeError(
"No constructor defined")
 
  229     __repr__ = _swig_repr
 
  231     def write(self, osa_buf):
 
  232         r"""write(_ostream self, char const * osa_buf)""" 
  233         return _IMP_symmetry._ostream_write(self, osa_buf)
 
  236 _IMP_symmetry._ostream_swigregister(_ostream)
 
  237 IMP_C_OPEN_BINARY = _IMP_symmetry.IMP_C_OPEN_BINARY
 
  240 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_FILESYSTEM
 
  242 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
 
  244 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_RANDOM
 
  246 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_SYSTEM
 
  248 IMP_CGAL_HAS_NUMPY = _IMP_symmetry.IMP_CGAL_HAS_NUMPY
 
  250 IMPCGAL_SHOW_WARNINGS = _IMP_symmetry.IMPCGAL_SHOW_WARNINGS
 
  253 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_IMP_CGAL
 
  255 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
 
  257 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
 
  259 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_RANDOM
 
  261 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_SYSTEM
 
  263 IMP_ALGEBRA_HAS_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_CGAL
 
  265 IMP_ALGEBRA_HAS_NUMPY = _IMP_symmetry.IMP_ALGEBRA_HAS_NUMPY
 
  267 IMP_ALGEBRA_HAS_ANN = _IMP_symmetry.IMP_ALGEBRA_HAS_ANN
 
  269 IMPALGEBRA_SHOW_WARNINGS = _IMP_symmetry.IMPALGEBRA_SHOW_WARNINGS
 
  272 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_CGAL
 
  274 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
 
  276 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
 
  278 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_RANDOM
 
  280 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_SYSTEM
 
  282 IMP_DISPLAY_HAS_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_CGAL
 
  284 IMP_DISPLAY_HAS_NUMPY = _IMP_symmetry.IMP_DISPLAY_HAS_NUMPY
 
  286 IMPDISPLAY_SHOW_WARNINGS = _IMP_symmetry.IMPDISPLAY_SHOW_WARNINGS
 
  289 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
 
  291 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
 
  293 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
 
  295 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
 
  297 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
 
  299 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_CGAL
 
  301 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_HDF5
 
  303 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_NUMPY
 
  305 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_symmetry.IMPSCOREFUNCTOR_SHOW_WARNINGS
 
  308 IMP_CORE_HAS_IMP_CGAL = _IMP_symmetry.IMP_CORE_HAS_IMP_CGAL
 
  310 IMP_CORE_HAS_IMP_KERNEL = _IMP_symmetry.IMP_CORE_HAS_IMP_KERNEL
 
  312 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_FILESYSTEM
 
  314 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
 
  316 IMP_CORE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CORE_HAS_BOOST_RANDOM
 
  318 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_SYSTEM
 
  320 IMP_CORE_HAS_CGAL = _IMP_symmetry.IMP_CORE_HAS_CGAL
 
  322 IMP_CORE_HAS_HDF5 = _IMP_symmetry.IMP_CORE_HAS_HDF5
 
  324 IMP_CORE_HAS_NUMPY = _IMP_symmetry.IMP_CORE_HAS_NUMPY
 
  326 IMPCORE_SHOW_WARNINGS = _IMP_symmetry.IMPCORE_SHOW_WARNINGS
 
  329 IMP_SYMMETRY_HAS_IMP_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_CGAL
 
  331 IMP_SYMMETRY_HAS_IMP_DISPLAY = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_DISPLAY
 
  333 IMP_SYMMETRY_HAS_IMP_KERNEL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_KERNEL
 
  335 IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR
 
  337 IMP_SYMMETRY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_FILESYSTEM
 
  339 IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS
 
  341 IMP_SYMMETRY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_RANDOM
 
  343 IMP_SYMMETRY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_SYSTEM
 
  345 IMP_SYMMETRY_HAS_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_CGAL
 
  347 IMP_SYMMETRY_HAS_HDF5 = _IMP_symmetry.IMP_SYMMETRY_HAS_HDF5
 
  349 IMP_SYMMETRY_HAS_NUMPY = _IMP_symmetry.IMP_SYMMETRY_HAS_NUMPY
 
  351 IMP_SYMMETRY_HAS_PYTHON_IHM = _IMP_symmetry.IMP_SYMMETRY_HAS_PYTHON_IHM
 
  353 IMPSYMMETRY_SHOW_WARNINGS = _IMP_symmetry.IMPSYMMETRY_SHOW_WARNINGS
 
  356 _object_types.append(
"BallMover")
 
  359 _object_types.append(
"RigidBodyMover")
 
  362     r"""Proxy of C++ IMP::symmetry::BallMover class.""" 
  364     thisown = property(
lambda x: x.this.own(), 
lambda x, v: x.this.own(v), doc=
"The membership flag")
 
  366     def __init__(self, p, ps, max_tr, ctrs, trs):
 
  367         r"""__init__(BallMover self, Particle p, IMP::Particles ps, IMP::Float max_tr, IMP::algebra::Vector3Ds ctrs, IMP::algebra::Transformation3Ds trs) -> BallMover""" 
  368         _IMP_symmetry.BallMover_swiginit(self, _IMP_symmetry.new_BallMover(p, ps, max_tr, ctrs, trs))
 
  370     def get_version_info(self):
 
  371         r"""get_version_info(BallMover self) -> VersionInfo""" 
  372         return _IMP_symmetry.BallMover_get_version_info(self)
 
  373     __swig_destroy__ = _IMP_symmetry.delete_BallMover
 
  376         r"""__str__(BallMover self) -> std::string""" 
  377         return _IMP_symmetry.BallMover___str__(self)
 
  380         r"""__repr__(BallMover self) -> std::string""" 
  381         return _IMP_symmetry.BallMover___repr__(self)
 
  385        return _object_cast_to_BallMover(o)
 
  389 _IMP_symmetry.BallMover_swigregister(BallMover)
 
  391     r"""Proxy of C++ IMP::symmetry::RigidBodyMover class.""" 
  393     thisown = property(
lambda x: x.this.own(), 
lambda x, v: x.this.own(v), doc=
"The membership flag")
 
  395     def __init__(self, d, ps, max_tr, max_ang, ctrs, trs):
 
  396         r"""__init__(RigidBodyMover self, RigidBody d, IMP::Particles ps, IMP::Float max_tr, IMP::Float max_ang, IMP::algebra::Vector3Ds ctrs, IMP::algebra::Transformation3Ds trs) -> RigidBodyMover""" 
  397         _IMP_symmetry.RigidBodyMover_swiginit(self, _IMP_symmetry.new_RigidBodyMover(d, ps, max_tr, max_ang, ctrs, trs))
 
  399     def get_version_info(self):
 
  400         r"""get_version_info(RigidBodyMover self) -> VersionInfo""" 
  401         return _IMP_symmetry.RigidBodyMover_get_version_info(self)
 
  402     __swig_destroy__ = _IMP_symmetry.delete_RigidBodyMover
 
  405         r"""__str__(RigidBodyMover self) -> std::string""" 
  406         return _IMP_symmetry.RigidBodyMover___str__(self)
 
  409         r"""__repr__(RigidBodyMover self) -> std::string""" 
  410         return _IMP_symmetry.RigidBodyMover___repr__(self)
 
  414        return _object_cast_to_RigidBodyMover(o)
 
  418 _IMP_symmetry.RigidBodyMover_swigregister(RigidBodyMover)
 
  421     r"""get_module_version() -> std::string const""" 
  422     return _IMP_symmetry.get_module_version()
 
  425     r"""get_example_path(std::string fname) -> std::string""" 
  426     return _IMP_symmetry.get_example_path(fname)
 
  429     r"""get_data_path(std::string fname) -> std::string""" 
  430     return _IMP_symmetry.get_data_path(fname)
 
  432 from . 
import _version_check
 
def get_data_path
Return the full path to one of this module's data files. 
 
Make CGAL functionality available to IMP. 
 
Composable functors to implement scores via compile-time composition. 
 
def get_example_path
Return the full path to one of this module's example files. 
 
def get_module_version
Return the version of this module, as a string. 
 
A base class for classes which perturb particles. 
 
Basic functionality that is expected to be used by a wide variety of IMP users. 
 
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
 
Output IMP model data in various file formats.