functions for calculation envelope penetration More...

#include <IMP/em/em_config.h>
#include "DensityMap.h"
#include <IMP/Particle.h>

Include dependency graph for envelope_penetration.h:

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Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.

	IMP::em
	Basic utilities for handling cryo-electron microscopy 3D density maps.

Functions
long	IMP::em::get_number_of_particles_outside_of_the_density (DensityMap *dmap, const Particles &ps, const IMP::algebra::Transformation3D &t=IMP::algebra::get_identity_transformation_3d(), float thr=0.0)
	Get the number of particles that are outside of the density. More...

Ints	IMP::em::get_numbers_of_particles_outside_of_the_density (DensityMap *dmap, const Particles &ps, const IMP::algebra::Transformation3Ds &transformations, float thr=0.0)
	Get numbers of particles (mult transforms) that are outside the density. More...

double	IMP::em::get_percentage_of_voxels_covered_by_particles (DensityMap *dmap, const Particles &ps, float smoothing_radius=3., const IMP::algebra::Transformation3D &t=IMP::algebra::get_identity_transformation_3d(), float thr=0.0)
	Get the number of density voxels that are not covered by particles. More...

Detailed Description

functions for calculation envelope penetration

Namespaces