base_types.h File Reference

Basic types used by IMP. More...

#include <IMP/kernel_config.h>
#include "Key.h"
#include <IMP/object_macros.h>
#include <IMP/value_macros.h>
#include <IMP/Vector.h>
#include <IMP/Pointer.h>
#include <IMP/WeakPointer.h>
#include <IMP/types.h>
#include <IMP/Array.h>
#include <IMP/Index.h>

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Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.

Typedefs
typedef IMP::Vector < IMP::Pointer< Container > >	IMP::Containers
typedef IMP::Vector < IMP::WeakPointer< Container > >	IMP::ContainersTemp
typedef IMP::Vector < IMP::Pointer< ModelObject > >	IMP::ModelObjects
typedef IMP::Vector < IMP::WeakPointer < ModelObject > >	IMP::ModelObjectsTemp
typedef Vector< ModelObjectsTemp >	IMP::ModelObjectsTemps
typedef IMP::Vector < IMP::Pointer< Model > >	IMP::Models
typedef IMP::Vector < IMP::WeakPointer< Model > >	IMP::ModelsTemp
typedef IMP::Vector < IMP::Pointer< OptimizerState > >	IMP::OptimizerStates
typedef IMP::Vector < IMP::WeakPointer < OptimizerState > >	IMP::OptimizerStatesTemp
typedef IMP::Vector < IMP::Pointer< PairContainer > >	IMP::PairContainers
typedef IMP::Vector < IMP::WeakPointer < PairContainer > >	IMP::PairContainersTemp
typedef IMP::Vector < IMP::Pointer< PairModifier > >	IMP::PairModifiers
typedef IMP::Vector < IMP::WeakPointer < PairModifier > >	IMP::PairModifiersTemp
typedef IMP::Vector < IMP::Pointer< PairPredicate > >	IMP::PairPredicates
typedef IMP::Vector < IMP::WeakPointer < PairPredicate > >	IMP::PairPredicatesTemp
typedef IMP::Vector < IMP::Pointer< PairScore > >	IMP::PairScores
typedef IMP::Vector < IMP::WeakPointer< PairScore > >	IMP::PairScoresTemp
typedef Index< ParticleIndexTag >	IMP::ParticleIndex
typedef Vector< ParticleIndex, std::allocator< ParticleIndex > >	IMP::ParticleIndexes
typedef Array< 2, ParticleIndex >	IMP::ParticleIndexPair
typedef IMP::Vector < ParticleIndexPair, std::allocator < ParticleIndexPair > >	IMP::ParticleIndexPairs
typedef Array< 4, ParticleIndex >	IMP::ParticleIndexQuad
typedef IMP::Vector < ParticleIndexQuad, std::allocator < ParticleIndexQuad > >	IMP::ParticleIndexQuads
typedef Array< 3, ParticleIndex >	IMP::ParticleIndexTriplet
typedef IMP::Vector < ParticleIndexTriplet, std::allocator < ParticleIndexTriplet > >	IMP::ParticleIndexTriplets
typedef Array< 2, WeakPointer < Particle >, Particle * >	IMP::ParticlePair
typedef IMP::Vector< ParticlePair >	IMP::ParticlePairsTemp
typedef Array< 4, WeakPointer < Particle >, Particle * >	IMP::ParticleQuad
typedef IMP::Vector< ParticleQuad >	IMP::ParticleQuadsTemp
typedef Vector< Pointer < Particle > >	IMP::Particles
typedef Vector< WeakPointer < Particle > >	IMP::ParticlesTemp
typedef Vector< ParticlesTemp >	IMP::ParticlesTemps
typedef Array< 3, WeakPointer < Particle >, Particle * >	IMP::ParticleTriplet
typedef IMP::Vector < ParticleTriplet >	IMP::ParticleTripletsTemp
typedef IMP::Vector < IMP::Pointer< QuadContainer > >	IMP::QuadContainers
typedef IMP::Vector < IMP::WeakPointer < QuadContainer > >	IMP::QuadContainersTemp
typedef IMP::Vector < IMP::Pointer< QuadModifier > >	IMP::QuadModifiers
typedef IMP::Vector < IMP::WeakPointer < QuadModifier > >	IMP::QuadModifiersTemp
typedef IMP::Vector < IMP::Pointer< QuadPredicate > >	IMP::QuadPredicates
typedef IMP::Vector < IMP::WeakPointer < QuadPredicate > >	IMP::QuadPredicatesTemp
typedef IMP::Vector < IMP::Pointer< QuadScore > >	IMP::QuadScores
typedef IMP::Vector < IMP::WeakPointer< QuadScore > >	IMP::QuadScoresTemp
typedef IMP::Vector < IMP::Pointer< Restraint > >	IMP::Restraints
typedef IMP::Vector < IMP::Pointer< RestraintSet > >	IMP::RestraintSets
typedef IMP::Vector < IMP::WeakPointer < RestraintSet > >	IMP::RestraintSetsTemp
typedef IMP::Vector < IMP::WeakPointer< Restraint > >	IMP::RestraintsTemp
typedef IMP::Vector < IMP::Pointer< ScoreState > >	IMP::ScoreStates
typedef IMP::Vector < IMP::WeakPointer< ScoreState > >	IMP::ScoreStatesTemp
typedef IMP::Vector < IMP::Pointer < ScoringFunction > >	IMP::ScoringFunctions
typedef IMP::Vector < IMP::WeakPointer < ScoringFunction > >	IMP::ScoringFunctionsTemp
typedef IMP::Vector < IMP::Pointer < SingletonContainer > >	IMP::SingletonContainers
typedef IMP::Vector < IMP::WeakPointer < SingletonContainer > >	IMP::SingletonContainersTemp
typedef IMP::Vector < IMP::Pointer < SingletonModifier > >	IMP::SingletonModifiers
typedef IMP::Vector < IMP::WeakPointer < SingletonModifier > >	IMP::SingletonModifiersTemp
typedef IMP::Vector < IMP::Pointer < SingletonPredicate > >	IMP::SingletonPredicates
typedef IMP::Vector < IMP::WeakPointer < SingletonPredicate > >	IMP::SingletonPredicatesTemp
typedef IMP::Vector < IMP::Pointer< SingletonScore > >	IMP::SingletonScores
typedef IMP::Vector < IMP::WeakPointer < SingletonScore > >	IMP::SingletonScoresTemp
typedef IMP::Vector < IMP::Pointer < TripletContainer > >	IMP::TripletContainers
typedef IMP::Vector < IMP::WeakPointer < TripletContainer > >	IMP::TripletContainersTemp
typedef IMP::Vector < IMP::Pointer < TripletModifier > >	IMP::TripletModifiers
typedef IMP::Vector < IMP::WeakPointer < TripletModifier > >	IMP::TripletModifiersTemp
typedef IMP::Vector < IMP::Pointer < TripletPredicate > >	IMP::TripletPredicates
typedef IMP::Vector < IMP::WeakPointer < TripletPredicate > >	IMP::TripletPredicatesTemp
typedef IMP::Vector < IMP::Pointer< TripletScore > >	IMP::TripletScores
typedef IMP::Vector < IMP::WeakPointer < TripletScore > >	IMP::TripletScoresTemp

Attribute Keys
Each type of attribute has an associated type of key. The keys can be constructed from a string. Such construction can be expensive and so the resulting keys should be cached.
typedef Key< 0 >	IMP::FloatKey
	The type used to identify float attributes in the Particles. More...
typedef IMP::Vector< FloatKey >	IMP::FloatKeys
typedef Key< 1 >	IMP::IntKey
	The type used to identify int attributes in the Particles. More...
typedef IMP::Vector< IntKey >	IMP::IntKeys
typedef Key< 2 >	IMP::StringKey
	The type used to identify string attributes in the Particles. More...
typedef IMP::Vector< StringKey >	IMP::StringKeys
typedef Key< 3 >	IMP::ParticleIndexKey
	The type used to identify a particle attribute in the Particles. More...
typedef IMP::Vector < ParticleIndexKey >	IMP::ParticleIndexKeys
typedef Key< 4 >	IMP::ObjectKey
	The type used to identify an Object attribute. More...
typedef IMP::Vector< ObjectKey >	IMP::ObjectKeys
typedef Key< 9 >	IMP::WeakObjectKey
	The type used to identify a non-ref counted Object attribute. More...
typedef IMP::Vector < WeakObjectKey >	IMP::WeakObjectKeys
typedef Key< 5 >	IMP::IntsKey
	The type used to identify int attributes in the Particles. More...
typedef IMP::Vector< IntsKey >	IMP::IntsKeys
typedef Key< 10 >	IMP::FloatsKey
	The type used to identify float vector attributes in the Particles. More...
typedef IMP::Vector< FloatsKey >	IMP::FloatsKeys
typedef Key< 6 >	IMP::ParticleIndexesKey
	The type used to identify a particle attribute in the Particles. More...
typedef IMP::Vector < ParticleIndexesKey >	IMP::ParticleIndexesKeys
typedef Key< 7 >	IMP::ObjectsKey
	The type used to identify a particle attribute in the Particles. More...
typedef IMP::Vector< ObjectsKey >	IMP::ObjectsKeys
typedef Key< 8 >	IMP::ModelKey
	The type used to identify data stored directly in the model. More...
typedef IMP::Vector< ModelKey >	IMP::ModelKeys
typedef Key< 11 >	IMP::TriggerKey
	The type used to identify changed model properties. More...
typedef IMP::Vector< TriggerKey >	IMP::TriggerKeys
typedef Key< 12 >	IMP::SparseStringKey
	The type used to identify sparse string attributes in the Particles. More...
typedef IMP::Vector < SparseStringKey >	IMP::SparseStringKeys
typedef Key< 13 >	IMP::SparseIntKey
	The type used to identify sparse int attributes in the Particles. More...
typedef IMP::Vector< SparseIntKey >	IMP::SparseIntKeys
typedef Key< 14 >	IMP::SparseFloatKey
	The type used to identify sparse float attributes in the Particles. More...
typedef IMP::Vector < SparseFloatKey >	IMP::SparseFloatKeys
typedef Key< 15 >	IMP::SparseParticleIndexKey
	The type used to identify sparse particle attributes in the Particles. More...
typedef IMP::Vector < SparseParticleIndexKey >	IMP::SparseParticleIndexKeys

Detailed Description

Basic types used by IMP.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file base_types.h.