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IMP Reference Guide
2.21.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
version 2.21.0
container/connectivity.py
Shows how to use and visualize the
IMP::container::ConnectingPairContainer
.
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## \example container/connectivity.py
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# Shows how to use and visualize the IMP::container::ConnectingPairContainer.
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from
__future__
import
print_function
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import
IMP.container
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import
IMP.rmf
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import
RMF
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import
sys
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IMP.setup_from_argv
(sys.argv,
"connectivity"
)
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m =
IMP.Model
()
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ds =
IMP.core.create_xyzr_particles
(m, 20, .1)
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sc =
IMP.container.ListSingletonContainer
(m, ds)
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cpc =
IMP.container.ConnectingPairContainer
(sc, .1)
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m.update()
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pg =
IMP.core.EdgePairsGeometry
(cpc)
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w = RMF.create_rmf_file(
"pairs.rmf"
)
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IMP.rmf.add_geometry
(w, pg)
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IMP.rmf.save_frame
(w,
"zero"
)
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print(pg.get_name())
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del w