IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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Performs rigid fitting between a set of particles and a density map. More...
#include <IMP/core/MonteCarlo.h>
#include <IMP/core/ConjugateGradients.h>
#include <IMP/RestraintSet.h>
#include <IMP/algebra/Transformation3D.h>
#include <IMP/Particle.h>
#include <IMP/Model.h>
#include "DensityMap.h"
#include "FitRestraint.h"
#include <IMP/em/em_config.h>
#include <IMP/OptimizerState.h>
#include <IMP/core/rigid_bodies.h>
#include <IMP/ScoreState.h>
#include <algorithm>
#include <cereal/access.hpp>
#include <cereal/types/vector.hpp>
Go to the source code of this file.
Classes | |
class | IMP::em::FittingSolutions |
A simple list of fitting solutions. More... | |
Namespaces | |
IMP | |
Base functionality and abstract base classes for representation, scoring and sampling. | |
IMP::em | |
Basic utilities for handling cryo-electron microscopy 3D density maps. | |
Typedefs | |
typedef IMP::Vector < FittingSolutions > | IMP::em::FittingSolutionsList |
Functions | |
Float | IMP::em::compute_fitting_score (const ParticlesTemp &ps, DensityMap *em_map, FloatKey wei_key=atom::Mass::get_mass_key()) |
Compute fitting scores for a given set of rigid transformations. More... | |
FittingSolutions | IMP::em::compute_fitting_scores (const ParticlesTemp &ps, DensityMap *em_map, const algebra::Transformation3Ds &transformations, bool fast_version=false, bool local_score=false, const FloatKey &wei_key=atom::Mass::get_mass_key()) |
Compute fitting scores for a given set of rigid transformations. More... | |
FittingSolutions | IMP::em::compute_fitting_scores (DensityMap *em_map, core::RigidBody rb, Refiner *refiner, const algebra::Transformation3Ds &transformations) |
Compute fitting scores for a given set of rigid transformations. More... | |
FittingSolutions | IMP::em::local_rigid_fitting (Particle *p, Refiner *refiner, const FloatKey &weight_key, DensityMap *dmap, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3, bool fast=true) |
Local rigid fitting of a rigid body. More... | |
FittingSolutions | IMP::em::local_rigid_fitting_around_point (Particle *p, Refiner *refiner, const FloatKey &weight_key, DensityMap *dmap, const algebra::Vector3D &anchor_centroid, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3, bool fast=false) |
Local rigid fitting of a rigid body around a center point. More... | |
FittingSolutions | IMP::em::local_rigid_fitting_around_points (Particle *p, Refiner *refiner, const FloatKey &wei_key, DensityMap *dmap, const algebra::Vector3Ds &anchor_centroids, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3) |
Local rigid fitting of a rigid body around a set of center points. More... | |
FittingSolutions | IMP::em::local_rigid_fitting_grid_search (const ParticlesTemp &ps, const FloatKey &wei_key, DensityMap *dmap, Int max_voxels_translation=2, Int translation_step=1, Float max_angle_in_radians=0.174, Int number_of_rotations=100) |
Local grid search rigid fitting. More... | |
template<class Archive > | |
void | cereal::serialize (Archive &ar, std::pair< IMP::algebra::Transformation3D, IMP::Float > &g) |
Performs rigid fitting between a set of particles and a density map.
Copyright 2007-2022 IMP Inventors. All rights reserved.
Definition in file rigid_fitting.h.