IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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Performs rigid fitting between a set of particles and a density map. More...
#include <IMP/core/XYZR.h>
#include <IMP/algebra/Transformation3D.h>
#include <IMP/Particle.h>
#include <IMP/Model.h>
#include <IMP/em/DensityMap.h>
#include <IMP/em/rigid_fitting.h>
#include <IMP/multifit/multifit_config.h>
#include <IMP/atom/Mass.h>
#include <IMP/ScoreState.h>
#include <IMP/container/ListSingletonContainer.h>
#include <IMP/algebra/eigen_analysis.h>
#include <algorithm>
Go to the source code of this file.
Namespaces | |
IMP | |
Base functionality and abstract base classes for representation, scoring and sampling. | |
IMP::multifit | |
Fitting atomic structures into a cryo-electron microscopy density map. | |
Functions | |
em::FittingSolutions | IMP::multifit::pca_based_rigid_fitting (core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis()) |
Compute fitting scores for a given set of rigid transformations. More... | |
em::FittingSolutions | IMP::multifit::pca_based_rigid_fitting (ParticlesTemp ps, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis()) |
Compute fitting scores for a given set of rigid transformations. More... | |
void | IMP::multifit::write_markers (const algebra::PrincipalComponentAnalysisD< 3 > &pca, std::ostream &out) |
Performs rigid fitting between a set of particles and a density map.
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Definition in file pca_based_rigid_fitting.h.