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IMP Reference Guide
2.20.2
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
version 2.20.2
npctransport.h
Go to the documentation of this file.
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/**
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* \file IMP/npctransport.h
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* \brief Include all non-deprecated headers in IMP.npctransport.
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*
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* Copyright 2007-2024 IMP Inventors. All rights reserved.
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*/
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#ifndef IMP_NPCTRANSPORT_H
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#define IMP_NPCTRANSPORT_H
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#include <
IMP/npctransport/AnchorToCylindricalPorePairScore.h
>
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#include <
IMP/npctransport/Avro2PBReader.h
>
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#include <IMP/npctransport/AvroDataFileData.h>
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#include <
IMP/npctransport/BipartitePairsStatisticsOptimizerState.h
>
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#include <
IMP/npctransport/BodyStatisticsOptimizerState.h
>
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#include <
IMP/npctransport/BrownianDynamicsTAMDWithSlabSupport.h
>
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#include <
IMP/npctransport/ChainStatisticsOptimizerState.h
>
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#include <
IMP/npctransport/ExcludeZRangeSingletonScore.h
>
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#include <
IMP/npctransport/FGChain.h
>
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#include <
IMP/npctransport/GlobalStatisticsOptimizerState.h
>
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#include <
IMP/npctransport/HarmonicSpringSingletonScore.h
>
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#include <
IMP/npctransport/Parameter.h
>
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#include <
IMP/npctransport/ParticleFactory.h
>
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#include <
IMP/npctransport/ParticleTransportStatisticsOptimizerState.h
>
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#include <
IMP/npctransport/PoreRadiusSingletonScore.h
>
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#include <
IMP/npctransport/RelaxingSpring.h
>
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#include <
IMP/npctransport/Scoring.h
>
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#include <
IMP/npctransport/SimulationData.h
>
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#include <
IMP/npctransport/SitesGeometry.h
>
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#include <
IMP/npctransport/SitesPairScore.h
>
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#include <
IMP/npctransport/SitesPairScoreParameters.h
>
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#include <
IMP/npctransport/SlabWithCylindricalPore.h
>
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#include <
IMP/npctransport/SlabWithCylindricalPoreGeometry.h
>
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#include <
IMP/npctransport/SlabWithCylindricalPorePairScore.h
>
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#include <
IMP/npctransport/SlabWithPore.h
>
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#include <
IMP/npctransport/SlabWithToroidalPore.h
>
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#include <
IMP/npctransport/SlabWithToroidalPoreGeometry.h
>
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#include <
IMP/npctransport/SlabWithToroidalPorePairScore.h
>
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#include <
IMP/npctransport/Statistics.h
>
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#include <
IMP/npctransport/Transporting.h
>
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#include <
IMP/npctransport/ZBiasSingletonScore.h
>
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#include <
IMP/npctransport/automatic_parameters.h
>
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#include <IMP/npctransport/avro.h>
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#include <
IMP/npctransport/enums.h
>
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#include <
IMP/npctransport/functor_linear_distance_pair_scores.h
>
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#include <
IMP/npctransport/functor_linear_distance_pair_scores_typedefs.h
>
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#include <
IMP/npctransport/harmonic_distance_pair_scores.h
>
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#include <
IMP/npctransport/initialize_positions.h
>
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#include <
IMP/npctransport/io.h
>
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#include <
IMP/npctransport/linear_distance_pair_scores.h
>
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#include <
IMP/npctransport/main.h
>
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#include <
IMP/npctransport/npctransport_proto.fwd.h
>
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#include <
IMP/npctransport/protobuf.h
>
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#include <
IMP/npctransport/randomize_particles.h
>
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#include <
IMP/npctransport/rmf_links.h
>
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#include <
IMP/npctransport/typedefs.h
>
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#include <
IMP/npctransport/util.h
>
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#endif
/* IMP_NPCTRANSPORT_H */
SlabWithCylindricalPoreGeometry.h
XXXXXXXXXXXXXX.
SlabWithToroidalPore.h
A decorator for a particle that's a slab with a toroidal pore.
RelaxingSpring.h
a spring between two diffusing particles whose resting length is relaxing towards some equilibrium va...
SlabWithToroidalPorePairScore.h
a score for a slab with a toroidal pore
Transporting.h
A decorator for a transporting particle, so as to keep track of its directionality.
Scoring.h
scoring associated with a SimulationData object
ZBiasSingletonScore.h
score that biases particles to go down the Z axis
enums.h
useful enums and constants
initialize_positions.h
description
ParticleTransportStatisticsOptimizerState.h
description
ChainStatisticsOptimizerState.h
description
BodyStatisticsOptimizerState.h
Track the rotational correlation time of a rigid body particle.
Statistics.h
statistics and order parameters about the simulations that is associated with a SimulationData object...
SlabWithToroidalPoreGeometry.h
XXXXXXXXXXXXXX.
SitesPairScore.h
A Score on the distance between a pair of particles.
protobuf.h
A Score on the distance between a pair of particles.
rmf_links.h
description
FGChain.h
creating TAMD chains
main.h
Helper functions for executable .cpp files.
Avro2PBReader.h
an iterator that reads npctransport protobuf output files one by one from a list of avro files (used ...
PoreRadiusSingletonScore.h
a score on the pore radius equilibrium value of a slab particle
Parameter.h
description
functor_linear_distance_pair_scores.h
A Score on the distance between a pair of particles.
SlabWithCylindricalPore.h
A decorator for a particle that's a slab with a cylindrical pore.
BipartitePairsStatisticsOptimizerState.h
description
util.h
utility methods for npctransport
automatic_parameters.h
description
ParticleFactory.h
description
SitesGeometry.h
Geometry of sites on particle surfaces.
SimulationData.h
description
GlobalStatisticsOptimizerState.h
description
functor_linear_distance_pair_scores_typedefs.h
Typedefs for the functor scores on the distance between a pair of particles.
SlabWithCylindricalPorePairScore.h
XXXXXXXXXXXXXX.
ExcludeZRangeSingletonScore.h
XXXXXXXXXXXXXX.
harmonic_distance_pair_scores.h
Harmonic scores on the distance between a pair of particles.
HarmonicSpringSingletonScore.h
Harmonic scores on the spring between a pair of particles. The spring resting length is dynamic Copyr...
typedefs.h
description
BrownianDynamicsTAMDWithSlabSupport.h
Simple molecular dynamics optimizer.
SlabWithPore.h
A decorator for a particle that's a slab with a cylindrical pore.
linear_distance_pair_scores.h
A Score on the distance between a pair of particles.
io.h
description
SitesPairScoreParameters.h
A summary of useful information about rigid bodies and their transformation for eg, caching purposes for SitesPairScore.
AnchorToCylindricalPorePairScore.h
A chore for anchoring a bead to a pore.
randomize_particles.h
Randomizing particles in a bounding volume.
npctransport_proto.fwd.h
forward declaration of incomplete protobuf files for the main data structures used ...