11 from __future__
import print_function, division, absolute_import
15 from sys
import version_info
as _swig_python_version_info
19 import builtins
as __builtin__
25 strthis =
"proxy of " + self.this.__repr__()
26 except __builtin__.Exception:
28 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
31 def _swig_setattr_nondynamic_instance_variable(set):
32 def set_instance_attr(self, name, value):
34 set(self, name, value)
35 elif name ==
"thisown":
37 elif hasattr(self, name)
and isinstance(getattr(type(self), name), property):
38 set(self, name, value)
40 raise AttributeError(
"You cannot add instance attributes to %s" % self)
41 return set_instance_attr
44 def _swig_setattr_nondynamic_class_variable(set):
45 def set_class_attr(cls, name, value):
46 if hasattr(cls, name)
and not isinstance(getattr(cls, name), property):
49 raise AttributeError(
"You cannot add class attributes to %s" % cls)
53 def _swig_add_metaclass(metaclass):
54 """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
56 return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
60 class _SwigNonDynamicMeta(type):
61 """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
62 __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
67 class IMP_MISC_SwigPyIterator(object):
68 r"""Proxy of C++ swig::IMP_MISC_SwigPyIterator class."""
70 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
72 def __init__(self, *args, **kwargs):
73 raise AttributeError(
"No constructor defined - class is abstract")
75 __swig_destroy__ = _IMP_misc.delete_IMP_MISC_SwigPyIterator
78 r"""value(IMP_MISC_SwigPyIterator self) -> PyObject *"""
79 return _IMP_misc.IMP_MISC_SwigPyIterator_value(self)
82 r"""incr(IMP_MISC_SwigPyIterator self, size_t n=1) -> IMP_MISC_SwigPyIterator"""
83 return _IMP_misc.IMP_MISC_SwigPyIterator_incr(self, n)
86 r"""decr(IMP_MISC_SwigPyIterator self, size_t n=1) -> IMP_MISC_SwigPyIterator"""
87 return _IMP_misc.IMP_MISC_SwigPyIterator_decr(self, n)
89 def distance(self, x):
90 r"""distance(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> ptrdiff_t"""
91 return _IMP_misc.IMP_MISC_SwigPyIterator_distance(self, x)
94 r"""equal(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
95 return _IMP_misc.IMP_MISC_SwigPyIterator_equal(self, x)
98 r"""copy(IMP_MISC_SwigPyIterator self) -> IMP_MISC_SwigPyIterator"""
99 return _IMP_misc.IMP_MISC_SwigPyIterator_copy(self)
102 r"""next(IMP_MISC_SwigPyIterator self) -> PyObject *"""
103 return _IMP_misc.IMP_MISC_SwigPyIterator_next(self)
106 r"""__next__(IMP_MISC_SwigPyIterator self) -> PyObject *"""
107 return _IMP_misc.IMP_MISC_SwigPyIterator___next__(self)
110 r"""previous(IMP_MISC_SwigPyIterator self) -> PyObject *"""
111 return _IMP_misc.IMP_MISC_SwigPyIterator_previous(self)
113 def advance(self, n):
114 r"""advance(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
115 return _IMP_misc.IMP_MISC_SwigPyIterator_advance(self, n)
118 r"""__eq__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
119 return _IMP_misc.IMP_MISC_SwigPyIterator___eq__(self, x)
122 r"""__ne__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> bool"""
123 return _IMP_misc.IMP_MISC_SwigPyIterator___ne__(self, x)
125 def __iadd__(self, n):
126 r"""__iadd__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
127 return _IMP_misc.IMP_MISC_SwigPyIterator___iadd__(self, n)
129 def __isub__(self, n):
130 r"""__isub__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
131 return _IMP_misc.IMP_MISC_SwigPyIterator___isub__(self, n)
133 def __add__(self, n):
134 r"""__add__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator"""
135 return _IMP_misc.IMP_MISC_SwigPyIterator___add__(self, n)
137 def __sub__(self, *args):
139 __sub__(IMP_MISC_SwigPyIterator self, ptrdiff_t n) -> IMP_MISC_SwigPyIterator
140 __sub__(IMP_MISC_SwigPyIterator self, IMP_MISC_SwigPyIterator x) -> ptrdiff_t
142 return _IMP_misc.IMP_MISC_SwigPyIterator___sub__(self, *args)
147 _IMP_misc.IMP_MISC_SwigPyIterator_swigregister(IMP_MISC_SwigPyIterator)
154 IMP_DEBUG = _IMP_misc.IMP_DEBUG
156 IMP_RELEASE = _IMP_misc.IMP_RELEASE
158 IMP_SILENT = _IMP_misc.IMP_SILENT
160 IMP_PROGRESS = _IMP_misc.IMP_PROGRESS
162 IMP_TERSE = _IMP_misc.IMP_TERSE
164 IMP_VERBOSE = _IMP_misc.IMP_VERBOSE
166 IMP_MEMORY = _IMP_misc.IMP_MEMORY
168 IMP_NONE = _IMP_misc.IMP_NONE
170 IMP_USAGE = _IMP_misc.IMP_USAGE
172 IMP_INTERNAL = _IMP_misc.IMP_INTERNAL
174 IMP_KERNEL_HAS_LOG4CXX = _IMP_misc.IMP_KERNEL_HAS_LOG4CXX
176 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_misc.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
178 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_misc.IMP_COMPILER_HAS_DEBUG_VECTOR
180 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_misc.IMP_COMPILER_HAS_RANDOM_SHUFFLE
182 IMP_COMPILER_HAS_THREE_WAY = _IMP_misc.IMP_COMPILER_HAS_THREE_WAY
184 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_misc.IMP_KERNEL_HAS_BOOST_RANDOM
186 IMP_KERNEL_HAS_NUMPY = _IMP_misc.IMP_KERNEL_HAS_NUMPY
188 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_misc.IMP_KERNEL_HAS_GPERFTOOLS
190 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_misc.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
192 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_misc.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
194 IMPKERNEL_SHOW_WARNINGS = _IMP_misc.IMPKERNEL_SHOW_WARNINGS
198 class _DirectorObjects(object):
199 """@internal Simple class to keep references to director objects
200 to prevent premature deletion."""
203 def register(self, obj):
204 """Take a reference to a director object; will only work for
205 refcounted C++ classes"""
206 if hasattr(obj,
'get_ref_count'):
207 self._objects.append(obj)
209 """Only drop our reference and allow cleanup by Python if no other
210 Python references exist (we hold 3 references: one in self._objects,
211 one in x, and one in the argument list for getrefcount) *and* no
212 other C++ references exist (the Python object always holds one)"""
213 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
214 or x.get_ref_count() > 1]
218 def get_object_count(self):
219 """Get number of director objects (useful for testing only)"""
220 return len(self._objects)
221 _director_objects = _DirectorObjects()
223 class _ostream(object):
224 r"""Proxy of C++ std::ostream class."""
226 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
228 def __init__(self, *args, **kwargs):
229 raise AttributeError(
"No constructor defined")
230 __repr__ = _swig_repr
232 def write(self, osa_buf):
233 r"""write(_ostream self, char const * osa_buf)"""
234 return _IMP_misc._ostream_write(self, osa_buf)
237 _IMP_misc._ostream_swigregister(_ostream)
238 IMP_C_OPEN_BINARY = _IMP_misc.IMP_C_OPEN_BINARY
241 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CGAL_HAS_BOOST_FILESYSTEM
243 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
245 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_misc.IMP_CGAL_HAS_BOOST_RANDOM
247 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CGAL_HAS_BOOST_SYSTEM
249 IMP_CGAL_HAS_NUMPY = _IMP_misc.IMP_CGAL_HAS_NUMPY
251 IMPCGAL_SHOW_WARNINGS = _IMP_misc.IMPCGAL_SHOW_WARNINGS
254 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_misc.IMP_ALGEBRA_HAS_IMP_CGAL
256 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
258 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
260 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_RANDOM
262 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_misc.IMP_ALGEBRA_HAS_BOOST_SYSTEM
264 IMP_ALGEBRA_HAS_CGAL = _IMP_misc.IMP_ALGEBRA_HAS_CGAL
266 IMP_ALGEBRA_HAS_NUMPY = _IMP_misc.IMP_ALGEBRA_HAS_NUMPY
268 IMP_ALGEBRA_HAS_ANN = _IMP_misc.IMP_ALGEBRA_HAS_ANN
270 IMPALGEBRA_SHOW_WARNINGS = _IMP_misc.IMPALGEBRA_SHOW_WARNINGS
273 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_misc.IMP_DISPLAY_HAS_IMP_CGAL
275 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
277 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
279 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_RANDOM
281 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_misc.IMP_DISPLAY_HAS_BOOST_SYSTEM
283 IMP_DISPLAY_HAS_CGAL = _IMP_misc.IMP_DISPLAY_HAS_CGAL
285 IMP_DISPLAY_HAS_NUMPY = _IMP_misc.IMP_DISPLAY_HAS_NUMPY
287 IMPDISPLAY_SHOW_WARNINGS = _IMP_misc.IMPDISPLAY_SHOW_WARNINGS
290 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
292 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
294 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
296 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
298 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
300 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_CGAL
302 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_HDF5
304 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_misc.IMP_SCORE_FUNCTOR_HAS_NUMPY
306 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_misc.IMPSCOREFUNCTOR_SHOW_WARNINGS
309 IMP_CORE_HAS_IMP_CGAL = _IMP_misc.IMP_CORE_HAS_IMP_CGAL
311 IMP_CORE_HAS_IMP_KERNEL = _IMP_misc.IMP_CORE_HAS_IMP_KERNEL
313 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CORE_HAS_BOOST_FILESYSTEM
315 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
317 IMP_CORE_HAS_BOOST_RANDOM = _IMP_misc.IMP_CORE_HAS_BOOST_RANDOM
319 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CORE_HAS_BOOST_SYSTEM
321 IMP_CORE_HAS_CGAL = _IMP_misc.IMP_CORE_HAS_CGAL
323 IMP_CORE_HAS_HDF5 = _IMP_misc.IMP_CORE_HAS_HDF5
325 IMP_CORE_HAS_NUMPY = _IMP_misc.IMP_CORE_HAS_NUMPY
327 IMPCORE_SHOW_WARNINGS = _IMP_misc.IMPCORE_SHOW_WARNINGS
330 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_misc.IMP_CONTAINER_HAS_IMP_ALGEBRA
332 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_misc.IMP_CONTAINER_HAS_IMP_CGAL
334 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_misc.IMP_CONTAINER_HAS_IMP_DISPLAY
336 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_misc.IMP_CONTAINER_HAS_IMP_KERNEL
338 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
340 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
342 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
344 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_RANDOM
346 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_misc.IMP_CONTAINER_HAS_BOOST_SYSTEM
348 IMP_CONTAINER_HAS_CGAL = _IMP_misc.IMP_CONTAINER_HAS_CGAL
350 IMP_CONTAINER_HAS_HDF5 = _IMP_misc.IMP_CONTAINER_HAS_HDF5
352 IMP_CONTAINER_HAS_NUMPY = _IMP_misc.IMP_CONTAINER_HAS_NUMPY
354 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_misc.IMP_CONTAINER_HAS_PYTHON_IHM
356 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_misc.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
358 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_misc.IMP_CONTAINER_HAS_ROBIN_MAP
360 IMPCONTAINER_SHOW_WARNINGS = _IMP_misc.IMPCONTAINER_SHOW_WARNINGS
363 IMP_ATOM_HAS_IMP_CGAL = _IMP_misc.IMP_ATOM_HAS_IMP_CGAL
365 IMP_ATOM_HAS_IMP_KERNEL = _IMP_misc.IMP_ATOM_HAS_IMP_KERNEL
367 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
369 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
371 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_misc.IMP_ATOM_HAS_BOOST_RANDOM
373 IMP_ATOM_HAS_BOOST_REGEX = _IMP_misc.IMP_ATOM_HAS_BOOST_REGEX
375 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_misc.IMP_ATOM_HAS_BOOST_SYSTEM
377 IMP_ATOM_HAS_CGAL = _IMP_misc.IMP_ATOM_HAS_CGAL
379 IMP_ATOM_HAS_HDF5 = _IMP_misc.IMP_ATOM_HAS_HDF5
381 IMP_ATOM_HAS_NUMPY = _IMP_misc.IMP_ATOM_HAS_NUMPY
383 IMP_ATOM_HAS_PYTHON_IHM = _IMP_misc.IMP_ATOM_HAS_PYTHON_IHM
385 IMPATOM_SHOW_WARNINGS = _IMP_misc.IMPATOM_SHOW_WARNINGS
387 IMP_ATOM_TYPE_INDEX = _IMP_misc.IMP_ATOM_TYPE_INDEX
389 IMP_RESIDUE_TYPE_INDEX = _IMP_misc.IMP_RESIDUE_TYPE_INDEX
391 IMP_HIERARCHY_TYPE_INDEX = _IMP_misc.IMP_HIERARCHY_TYPE_INDEX
393 IMP_CHAIN_TYPE_INDEX = _IMP_misc.IMP_CHAIN_TYPE_INDEX
396 IMP_MISC_HAS_IMP_ALGEBRA = _IMP_misc.IMP_MISC_HAS_IMP_ALGEBRA
398 IMP_MISC_HAS_IMP_CGAL = _IMP_misc.IMP_MISC_HAS_IMP_CGAL
400 IMP_MISC_HAS_IMP_CONTAINER = _IMP_misc.IMP_MISC_HAS_IMP_CONTAINER
402 IMP_MISC_HAS_IMP_DISPLAY = _IMP_misc.IMP_MISC_HAS_IMP_DISPLAY
404 IMP_MISC_HAS_IMP_KERNEL = _IMP_misc.IMP_MISC_HAS_IMP_KERNEL
406 IMP_MISC_HAS_IMP_SCORE_FUNCTOR = _IMP_misc.IMP_MISC_HAS_IMP_SCORE_FUNCTOR
408 IMP_MISC_HAS_BOOST_FILESYSTEM = _IMP_misc.IMP_MISC_HAS_BOOST_FILESYSTEM
410 IMP_MISC_HAS_BOOST_PROGRAMOPTIONS = _IMP_misc.IMP_MISC_HAS_BOOST_PROGRAMOPTIONS
412 IMP_MISC_HAS_BOOST_RANDOM = _IMP_misc.IMP_MISC_HAS_BOOST_RANDOM
414 IMP_MISC_HAS_BOOST_REGEX = _IMP_misc.IMP_MISC_HAS_BOOST_REGEX
416 IMP_MISC_HAS_BOOST_SYSTEM = _IMP_misc.IMP_MISC_HAS_BOOST_SYSTEM
418 IMP_MISC_HAS_CGAL = _IMP_misc.IMP_MISC_HAS_CGAL
420 IMP_MISC_HAS_HDF5 = _IMP_misc.IMP_MISC_HAS_HDF5
422 IMP_MISC_HAS_NUMPY = _IMP_misc.IMP_MISC_HAS_NUMPY
424 IMP_MISC_HAS_PYTHON_IHM = _IMP_misc.IMP_MISC_HAS_PYTHON_IHM
426 IMPMISC_SHOW_WARNINGS = _IMP_misc.IMPMISC_SHOW_WARNINGS
429 _object_types.append(
"WormLikeChain")
432 def _object_cast_to_WormLikeChain(o):
433 r"""_object_cast_to_WormLikeChain(Object o) -> WormLikeChain"""
434 return _IMP_misc._object_cast_to_WormLikeChain(o)
436 _object_types.append(
"FreelyJointedChain")
439 def _object_cast_to_FreelyJointedChain(o):
440 r"""_object_cast_to_FreelyJointedChain(Object o) -> FreelyJointedChain"""
441 return _IMP_misc._object_cast_to_FreelyJointedChain(o)
443 _object_types.append(
"StateAdaptor")
446 def _object_cast_to_StateAdaptor(o):
447 r"""_object_cast_to_StateAdaptor(Object o) -> StateAdaptor"""
448 return _IMP_misc._object_cast_to_StateAdaptor(o)
450 _object_types.append(
"CommonEndpointPairFilter")
453 def _object_cast_to_CommonEndpointPairFilter(o):
454 r"""_object_cast_to_CommonEndpointPairFilter(Object o) -> CommonEndpointPairFilter"""
455 return _IMP_misc._object_cast_to_CommonEndpointPairFilter(o)
457 _object_types.append(
"LogPairScore")
460 def _object_cast_to_LogPairScore(o):
461 r"""_object_cast_to_LogPairScore(Object o) -> LogPairScore"""
462 return _IMP_misc._object_cast_to_LogPairScore(o)
464 _object_types.append(
"LowestRefinedPairScore")
467 def _object_cast_to_LowestRefinedPairScore(o):
468 r"""_object_cast_to_LowestRefinedPairScore(Object o) -> LowestRefinedPairScore"""
469 return _IMP_misc._object_cast_to_LowestRefinedPairScore(o)
471 _object_types.append(
"SoftCylinderPairScore")
474 def _object_cast_to_SoftCylinderPairScore(o):
475 r"""_object_cast_to_SoftCylinderPairScore(Object o) -> SoftCylinderPairScore"""
476 return _IMP_misc._object_cast_to_SoftCylinderPairScore(o)
478 _object_types.append(
"DecayPairContainerOptimizerState")
481 def _object_cast_to_DecayPairContainerOptimizerState(o):
482 r"""_object_cast_to_DecayPairContainerOptimizerState(Object o) -> DecayPairContainerOptimizerState"""
483 return _IMP_misc._object_cast_to_DecayPairContainerOptimizerState(o)
485 def CustomXYZRs(l=[]):
486 return [CustomXYZR(x)
for x
in l]
487 _plural_types.append(
"CustomXYZRs")
490 _value_types.append(
"CustomXYZR")
493 r"""Proxy of C++ IMP::misc::WormLikeChain class."""
495 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
497 def __init__(self, l_max, lp):
498 r"""__init__(WormLikeChain self, IMP::Float l_max, IMP::Float lp) -> WormLikeChain"""
499 _IMP_misc.WormLikeChain_swiginit(self, _IMP_misc.new_WormLikeChain(l_max, lp))
502 r"""get_version_info(WormLikeChain self) -> VersionInfo"""
503 return _IMP_misc.WormLikeChain_get_version_info(self)
504 __swig_destroy__ = _IMP_misc.delete_WormLikeChain
506 def do_show(self, out):
507 r"""do_show(WormLikeChain self, _ostream out)"""
508 return _IMP_misc.WormLikeChain_do_show(self, out)
511 r"""__str__(WormLikeChain self) -> std::string"""
512 return _IMP_misc.WormLikeChain___str__(self)
515 r"""__repr__(WormLikeChain self) -> std::string"""
516 return _IMP_misc.WormLikeChain___repr__(self)
520 return _object_cast_to_WormLikeChain(o)
524 _IMP_misc.WormLikeChain_swigregister(WormLikeChain)
526 r"""Proxy of C++ IMP::misc::FreelyJointedChain class."""
528 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
530 def __init__(self, link_num, link_length):
531 r"""__init__(FreelyJointedChain self, int link_num, double link_length) -> FreelyJointedChain"""
532 _IMP_misc.FreelyJointedChain_swiginit(self, _IMP_misc.new_FreelyJointedChain(link_num, link_length))
535 r"""get_version_info(FreelyJointedChain self) -> VersionInfo"""
536 return _IMP_misc.FreelyJointedChain_get_version_info(self)
537 __swig_destroy__ = _IMP_misc.delete_FreelyJointedChain
539 def get_link_number(self):
540 r"""get_link_number(FreelyJointedChain self) -> int"""
541 return _IMP_misc.FreelyJointedChain_get_link_number(self)
543 def get_link_length(self):
544 r"""get_link_length(FreelyJointedChain self) -> double"""
545 return _IMP_misc.FreelyJointedChain_get_link_length(self)
547 def set_link_number(self, N):
548 r"""set_link_number(FreelyJointedChain self, int N)"""
549 return _IMP_misc.FreelyJointedChain_set_link_number(self, N)
551 def set_link_length(self, b):
552 r"""set_link_length(FreelyJointedChain self, double b)"""
553 return _IMP_misc.FreelyJointedChain_set_link_length(self, b)
555 def get_distance_at_minimum(self):
556 r"""get_distance_at_minimum(FreelyJointedChain self) -> double"""
557 return _IMP_misc.FreelyJointedChain_get_distance_at_minimum(self)
559 def get_average_distance(self):
560 r"""get_average_distance(FreelyJointedChain self) -> double"""
561 return _IMP_misc.FreelyJointedChain_get_average_distance(self)
564 r"""__str__(FreelyJointedChain self) -> std::string"""
565 return _IMP_misc.FreelyJointedChain___str__(self)
568 r"""__repr__(FreelyJointedChain self) -> std::string"""
569 return _IMP_misc.FreelyJointedChain___repr__(self)
573 return _object_cast_to_FreelyJointedChain(o)
577 _IMP_misc.FreelyJointedChain_swigregister(FreelyJointedChain)
579 r"""Proxy of C++ IMP::misc::LowestRefinedPairScore class."""
581 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
583 def __init__(self, r, f):
584 r"""__init__(LowestRefinedPairScore self, Refiner r, PairScore f) -> LowestRefinedPairScore"""
585 _IMP_misc.LowestRefinedPairScore_swiginit(self, _IMP_misc.new_LowestRefinedPairScore(r, f))
588 r"""do_get_inputs(LowestRefinedPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
589 return _IMP_misc.LowestRefinedPairScore_do_get_inputs(self, m, pis)
592 r"""get_version_info(LowestRefinedPairScore self) -> VersionInfo"""
593 return _IMP_misc.LowestRefinedPairScore_get_version_info(self)
594 __swig_destroy__ = _IMP_misc.delete_LowestRefinedPairScore
597 r"""__str__(LowestRefinedPairScore self) -> std::string"""
598 return _IMP_misc.LowestRefinedPairScore___str__(self)
601 r"""__repr__(LowestRefinedPairScore self) -> std::string"""
602 return _IMP_misc.LowestRefinedPairScore___repr__(self)
606 return _object_cast_to_LowestRefinedPairScore(o)
610 _IMP_misc.LowestRefinedPairScore_swigregister(LowestRefinedPairScore)
612 r"""Proxy of C++ IMP::misc::LogPairScore class."""
614 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
617 r"""__init__(LogPairScore self) -> LogPairScore"""
618 _IMP_misc.LogPairScore_swiginit(self, _IMP_misc.new_LogPairScore())
621 r"""do_get_inputs(LogPairScore self, Model arg2, IMP::ParticleIndexes const & arg3) -> IMP::ModelObjectsTemp"""
622 return _IMP_misc.LogPairScore_do_get_inputs(self, arg2, arg3)
625 r"""get_version_info(LogPairScore self) -> VersionInfo"""
626 return _IMP_misc.LogPairScore_get_version_info(self)
627 __swig_destroy__ = _IMP_misc.delete_LogPairScore
629 def get_particle_pairs(self):
630 r"""get_particle_pairs(LogPairScore self) -> IMP::ParticlePairsTemp"""
631 return _IMP_misc.LogPairScore_get_particle_pairs(self)
634 r"""clear(LogPairScore self)"""
635 return _IMP_misc.LogPairScore_clear(self)
637 def get_contains(self, pp):
638 r"""get_contains(LogPairScore self, IMP::ParticlePair const & pp) -> bool"""
639 return _IMP_misc.LogPairScore_get_contains(self, pp)
642 r"""__str__(LogPairScore self) -> std::string"""
643 return _IMP_misc.LogPairScore___str__(self)
646 r"""__repr__(LogPairScore self) -> std::string"""
647 return _IMP_misc.LogPairScore___repr__(self)
651 return _object_cast_to_LogPairScore(o)
655 _IMP_misc.LogPairScore_swigregister(LogPairScore)
657 r"""Proxy of C++ IMP::misc::StateAdaptor class."""
659 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
661 def __init__(self, m, before, after):
662 r"""__init__(StateAdaptor self, Model m, OptimizerState before, OptimizerState after) -> StateAdaptor"""
663 _IMP_misc.StateAdaptor_swiginit(self, _IMP_misc.new_StateAdaptor(m, before, after))
665 def do_before_evaluate(self):
666 r"""do_before_evaluate(StateAdaptor self)"""
667 return _IMP_misc.StateAdaptor_do_before_evaluate(self)
669 def do_after_evaluate(self, da):
670 r"""do_after_evaluate(StateAdaptor self, DerivativeAccumulator da)"""
671 return _IMP_misc.StateAdaptor_do_after_evaluate(self, da)
674 r"""do_get_inputs(StateAdaptor self) -> IMP::ModelObjectsTemp"""
675 return _IMP_misc.StateAdaptor_do_get_inputs(self)
678 r"""do_get_outputs(StateAdaptor self) -> IMP::ModelObjectsTemp"""
679 return _IMP_misc.StateAdaptor_do_get_outputs(self)
682 r"""get_version_info(StateAdaptor self) -> VersionInfo"""
683 return _IMP_misc.StateAdaptor_get_version_info(self)
684 __swig_destroy__ = _IMP_misc.delete_StateAdaptor
687 r"""__str__(StateAdaptor self) -> std::string"""
688 return _IMP_misc.StateAdaptor___str__(self)
691 r"""__repr__(StateAdaptor self) -> std::string"""
692 return _IMP_misc.StateAdaptor___repr__(self)
696 return _object_cast_to_StateAdaptor(o)
700 _IMP_misc.StateAdaptor_swigregister(StateAdaptor)
702 r"""Proxy of C++ IMP::misc::CommonEndpointPairFilter class."""
704 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
707 r"""__init__(CommonEndpointPairFilter self) -> CommonEndpointPairFilter"""
708 _IMP_misc.CommonEndpointPairFilter_swiginit(self, _IMP_misc.new_CommonEndpointPairFilter())
711 r"""do_get_inputs(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
712 return _IMP_misc.CommonEndpointPairFilter_do_get_inputs(self, m, pis)
714 def get_value(self, *args):
716 get_value(CommonEndpointPairFilter self, IMP::ParticlePair const & a) -> int
717 get_value(CommonEndpointPairFilter self, IMP::ParticlePairsTemp const & o) -> IMP::Ints
719 return _IMP_misc.CommonEndpointPairFilter_get_value(self, *args)
721 def get_value_index(self, *args):
723 get_value_index(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexPair const & p) -> int
724 get_value_index(CommonEndpointPairFilter self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
726 return _IMP_misc.CommonEndpointPairFilter_get_value_index(self, *args)
729 r"""get_version_info(CommonEndpointPairFilter self) -> VersionInfo"""
730 return _IMP_misc.CommonEndpointPairFilter_get_version_info(self)
731 __swig_destroy__ = _IMP_misc.delete_CommonEndpointPairFilter
734 r"""__str__(CommonEndpointPairFilter self) -> std::string"""
735 return _IMP_misc.CommonEndpointPairFilter___str__(self)
738 r"""__repr__(CommonEndpointPairFilter self) -> std::string"""
739 return _IMP_misc.CommonEndpointPairFilter___repr__(self)
743 return _object_cast_to_CommonEndpointPairFilter(o)
747 _IMP_misc.CommonEndpointPairFilter_swigregister(CommonEndpointPairFilter)
749 r"""Proxy of C++ IMP::misc::CustomXYZR class."""
751 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
753 def get_decorator_traits(self):
754 r"""get_decorator_traits(CustomXYZR self) -> FloatKey"""
755 return _IMP_misc.CustomXYZR_get_decorator_traits(self)
758 def get_default_decorator_traits():
759 r"""get_default_decorator_traits() -> FloatKey"""
760 return _IMP_misc.CustomXYZR_get_default_decorator_traits()
762 def __init__(self, *args):
764 __init__(CustomXYZR self) -> CustomXYZR
765 __init__(CustomXYZR self, Model m, ParticleIndex id, FloatKey tr=IMP::core::XYZR::get_radius_key()) -> CustomXYZR
766 __init__(CustomXYZR self, _ParticleAdaptor d, FloatKey tr=IMP::core::XYZR::get_radius_key()) -> CustomXYZR
768 _IMP_misc.CustomXYZR_swiginit(self, _IMP_misc.new_CustomXYZR(*args))
770 def show(self, *args):
771 r"""show(CustomXYZR self, _ostream out=std::cout)"""
772 return _IMP_misc.CustomXYZR_show(self, *args)
775 def setup_particle(*args):
777 setup_particle(Model m, ParticleIndex pi, FloatKey tr=IMP::misc::CustomXYZR::get_default_decorator_traits()) -> CustomXYZR
778 setup_particle(_ParticleAdaptor d, FloatKey tr=IMP::misc::CustomXYZR::get_default_decorator_traits()) -> CustomXYZR
779 setup_particle(Model m, ParticleIndex pi, double radius, FloatKey tr=IMP::misc::CustomXYZR::get_default_decorator_traits()) -> CustomXYZR
780 setup_particle(_ParticleAdaptor d, double radius, FloatKey tr=IMP::misc::CustomXYZR::get_default_decorator_traits()) -> CustomXYZR
781 setup_particle(Model m, ParticleIndex pi, Sphere3D ball, FloatKey tr=IMP::misc::CustomXYZR::get_default_decorator_traits()) -> CustomXYZR
782 setup_particle(_ParticleAdaptor d, Sphere3D ball, FloatKey tr=IMP::misc::CustomXYZR::get_default_decorator_traits()) -> CustomXYZR
784 return _IMP_misc.CustomXYZR_setup_particle(*args)
787 def get_is_setup(*args):
789 get_is_setup(_ParticleAdaptor p, FloatKey tr=IMP::core::XYZR::get_radius_key()) -> bool
790 get_is_setup(Model m, ParticleIndex pi, FloatKey radius_key=get_default_radius_key()) -> bool
792 return _IMP_misc.CustomXYZR_get_is_setup(*args)
794 def get_radius(self):
795 r"""get_radius(CustomXYZR self) -> IMP::Float"""
796 return _IMP_misc.CustomXYZR_get_radius(self)
798 def set_radius(self, t):
799 r"""set_radius(CustomXYZR self, IMP::Float t)"""
800 return _IMP_misc.CustomXYZR_set_radius(self, t)
802 def get_sphere(self):
803 r"""get_sphere(CustomXYZR self) -> Sphere3D"""
804 return _IMP_misc.CustomXYZR_get_sphere(self)
806 def set_sphere(self, s):
807 r"""set_sphere(CustomXYZR self, Sphere3D s)"""
808 return _IMP_misc.CustomXYZR_set_sphere(self, s)
811 def get_default_radius_key():
812 r"""get_default_radius_key() -> FloatKey"""
813 return _IMP_misc.CustomXYZR_get_default_radius_key()
815 def add_to_radius_derivative(self, v, d):
816 r"""add_to_radius_derivative(CustomXYZR self, double v, DerivativeAccumulator d)"""
817 return _IMP_misc.CustomXYZR_add_to_radius_derivative(self, v, d)
819 def get_traits(self):
820 r"""get_traits(CustomXYZR self) -> FloatKey"""
821 return _IMP_misc.CustomXYZR_get_traits(self)
823 def add_attribute(self, *args):
825 add_attribute(CustomXYZR self, FloatKey k, IMP::Float v, bool opt)
826 add_attribute(CustomXYZR self, FloatKey a0, IMP::Float a1)
827 add_attribute(CustomXYZR self, IntKey a0, IMP::Int a1)
828 add_attribute(CustomXYZR self, FloatsKey a0, IMP::Floats a1)
829 add_attribute(CustomXYZR self, IntsKey a0, IMP::Ints a1)
830 add_attribute(CustomXYZR self, StringKey a0, IMP::String a1)
831 add_attribute(CustomXYZR self, ParticleIndexKey a0, Particle a1)
832 add_attribute(CustomXYZR self, ObjectKey a0, Object a1)
833 add_attribute(CustomXYZR self, SparseFloatKey a0, IMP::Float a1)
834 add_attribute(CustomXYZR self, SparseIntKey a0, IMP::Int a1)
835 add_attribute(CustomXYZR self, SparseStringKey a0, IMP::String a1)
836 add_attribute(CustomXYZR self, SparseParticleIndexKey a0, ParticleIndex a1)
838 return _IMP_misc.CustomXYZR_add_attribute(self, *args)
840 def get_value(self, *args):
842 get_value(CustomXYZR self, FloatKey a0) -> IMP::Float
843 get_value(CustomXYZR self, IntKey a0) -> IMP::Int
844 get_value(CustomXYZR self, FloatsKey a0) -> IMP::Floats
845 get_value(CustomXYZR self, IntsKey a0) -> IMP::Ints
846 get_value(CustomXYZR self, StringKey a0) -> IMP::String
847 get_value(CustomXYZR self, ParticleIndexKey a0) -> Particle
848 get_value(CustomXYZR self, ObjectKey a0) -> Object
849 get_value(CustomXYZR self, SparseFloatKey a0) -> IMP::Float
850 get_value(CustomXYZR self, SparseIntKey a0) -> IMP::Int
851 get_value(CustomXYZR self, SparseStringKey a0) -> IMP::String
852 get_value(CustomXYZR self, SparseParticleIndexKey a0) -> ParticleIndex
854 return _IMP_misc.CustomXYZR_get_value(self, *args)
856 def set_value(self, *args):
858 set_value(CustomXYZR self, FloatKey a0, IMP::Float a1)
859 set_value(CustomXYZR self, IntKey a0, IMP::Int a1)
860 set_value(CustomXYZR self, FloatsKey a0, IMP::Floats a1)
861 set_value(CustomXYZR self, IntsKey a0, IMP::Ints a1)
862 set_value(CustomXYZR self, StringKey a0, IMP::String a1)
863 set_value(CustomXYZR self, ParticleIndexKey a0, Particle a1)
864 set_value(CustomXYZR self, ObjectKey a0, Object a1)
865 set_value(CustomXYZR self, SparseFloatKey a0, IMP::Float a1)
866 set_value(CustomXYZR self, SparseIntKey a0, IMP::Int a1)
867 set_value(CustomXYZR self, SparseStringKey a0, IMP::String a1)
868 set_value(CustomXYZR self, SparseParticleIndexKey a0, ParticleIndex a1)
870 return _IMP_misc.CustomXYZR_set_value(self, *args)
872 def remove_attribute(self, *args):
874 remove_attribute(CustomXYZR self, FloatKey a0)
875 remove_attribute(CustomXYZR self, IntKey a0)
876 remove_attribute(CustomXYZR self, FloatsKey a0)
877 remove_attribute(CustomXYZR self, IntsKey a0)
878 remove_attribute(CustomXYZR self, StringKey a0)
879 remove_attribute(CustomXYZR self, ParticleIndexKey a0)
880 remove_attribute(CustomXYZR self, ObjectKey a0)
881 remove_attribute(CustomXYZR self, SparseFloatKey a0)
882 remove_attribute(CustomXYZR self, SparseIntKey a0)
883 remove_attribute(CustomXYZR self, SparseStringKey a0)
884 remove_attribute(CustomXYZR self, SparseParticleIndexKey a0)
886 return _IMP_misc.CustomXYZR_remove_attribute(self, *args)
888 def has_attribute(self, *args):
890 has_attribute(CustomXYZR self, FloatKey a0) -> bool
891 has_attribute(CustomXYZR self, IntKey a0) -> bool
892 has_attribute(CustomXYZR self, FloatsKey a0) -> bool
893 has_attribute(CustomXYZR self, IntsKey a0) -> bool
894 has_attribute(CustomXYZR self, StringKey a0) -> bool
895 has_attribute(CustomXYZR self, ParticleIndexKey a0) -> bool
896 has_attribute(CustomXYZR self, ObjectKey a0) -> bool
897 has_attribute(CustomXYZR self, SparseFloatKey a0) -> bool
898 has_attribute(CustomXYZR self, SparseIntKey a0) -> bool
899 has_attribute(CustomXYZR self, SparseStringKey a0) -> bool
900 has_attribute(CustomXYZR self, SparseParticleIndexKey a0) -> bool
902 return _IMP_misc.CustomXYZR_has_attribute(self, *args)
904 def get_derivative(self, a0):
905 r"""get_derivative(CustomXYZR self, FloatKey a0) -> double"""
906 return _IMP_misc.CustomXYZR_get_derivative(self, a0)
909 r"""get_name(CustomXYZR self) -> std::string"""
910 return _IMP_misc.CustomXYZR_get_name(self)
913 r"""clear_caches(CustomXYZR self)"""
914 return _IMP_misc.CustomXYZR_clear_caches(self)
916 def set_name(self, a0):
917 r"""set_name(CustomXYZR self, std::string a0)"""
918 return _IMP_misc.CustomXYZR_set_name(self, a0)
921 r"""set_check_level(CustomXYZR self, IMP::CheckLevel a0)"""
922 return _IMP_misc.CustomXYZR_set_check_level(self, a0)
924 def add_to_derivative(self, a0, a1, a2):
925 r"""add_to_derivative(CustomXYZR self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
926 return _IMP_misc.CustomXYZR_add_to_derivative(self, a0, a1, a2)
928 def set_is_optimized(self, a0, a1):
929 r"""set_is_optimized(CustomXYZR self, FloatKey a0, bool a1)"""
930 return _IMP_misc.CustomXYZR_set_is_optimized(self, a0, a1)
932 def get_is_optimized(self, a0):
933 r"""get_is_optimized(CustomXYZR self, FloatKey a0) -> bool"""
934 return _IMP_misc.CustomXYZR_get_is_optimized(self, a0)
936 def get_check_level(self):
937 r"""get_check_level(CustomXYZR self) -> IMP::CheckLevel"""
938 return _IMP_misc.CustomXYZR_get_check_level(self)
940 def __eq__(self, *args):
942 __eq__(CustomXYZR self, CustomXYZR o) -> bool
943 __eq__(CustomXYZR self, Particle d) -> bool
945 return _IMP_misc.CustomXYZR___eq__(self, *args)
947 def __ne__(self, *args):
949 __ne__(CustomXYZR self, CustomXYZR o) -> bool
950 __ne__(CustomXYZR self, Particle d) -> bool
952 return _IMP_misc.CustomXYZR___ne__(self, *args)
954 def __le__(self, *args):
956 __le__(CustomXYZR self, CustomXYZR o) -> bool
957 __le__(CustomXYZR self, Particle d) -> bool
959 return _IMP_misc.CustomXYZR___le__(self, *args)
961 def __lt__(self, *args):
963 __lt__(CustomXYZR self, CustomXYZR o) -> bool
964 __lt__(CustomXYZR self, Particle d) -> bool
966 return _IMP_misc.CustomXYZR___lt__(self, *args)
968 def __ge__(self, *args):
970 __ge__(CustomXYZR self, CustomXYZR o) -> bool
971 __ge__(CustomXYZR self, Particle d) -> bool
973 return _IMP_misc.CustomXYZR___ge__(self, *args)
975 def __gt__(self, *args):
977 __gt__(CustomXYZR self, CustomXYZR o) -> bool
978 __gt__(CustomXYZR self, Particle d) -> bool
980 return _IMP_misc.CustomXYZR___gt__(self, *args)
983 r"""__hash__(CustomXYZR self) -> std::size_t"""
984 return _IMP_misc.CustomXYZR___hash__(self)
987 r"""__str__(CustomXYZR self) -> std::string"""
988 return _IMP_misc.CustomXYZR___str__(self)
991 r"""__repr__(CustomXYZR self) -> std::string"""
992 return _IMP_misc.CustomXYZR___repr__(self)
993 __swig_destroy__ = _IMP_misc.delete_CustomXYZR
996 _IMP_misc.CustomXYZR_swigregister(CustomXYZR)
998 def __lshift__(out, n):
999 r"""__lshift__(_ostream out, CustomXYZR n) -> _ostream"""
1000 return _IMP_misc.__lshift__(out, n)
1003 r"""get_distance(CustomXYZR a, CustomXYZR b) -> double"""
1004 return _IMP_misc.get_distance(a, b)
1007 r"""get_sphere_d_geometry(CustomXYZR d) -> Sphere3D"""
1008 return _IMP_misc.get_sphere_d_geometry(d)
1011 r"""set_sphere_d_geometry(CustomXYZR d, Sphere3D v)"""
1012 return _IMP_misc.set_sphere_d_geometry(d, v)
1014 r"""Proxy of C++ IMP::misc::SoftCylinderPairScore class."""
1016 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1018 def __init__(self, k):
1019 r"""__init__(SoftCylinderPairScore self, double k) -> SoftCylinderPairScore"""
1020 _IMP_misc.SoftCylinderPairScore_swiginit(self, _IMP_misc.new_SoftCylinderPairScore(k))
1023 r"""do_get_inputs(SoftCylinderPairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
1024 return _IMP_misc.SoftCylinderPairScore_do_get_inputs(self, m, pis)
1027 r"""get_version_info(SoftCylinderPairScore self) -> VersionInfo"""
1028 return _IMP_misc.SoftCylinderPairScore_get_version_info(self)
1029 __swig_destroy__ = _IMP_misc.delete_SoftCylinderPairScore
1032 r"""__str__(SoftCylinderPairScore self) -> std::string"""
1033 return _IMP_misc.SoftCylinderPairScore___str__(self)
1036 r"""__repr__(SoftCylinderPairScore self) -> std::string"""
1037 return _IMP_misc.SoftCylinderPairScore___repr__(self)
1041 return _object_cast_to_SoftCylinderPairScore(o)
1045 _IMP_misc.SoftCylinderPairScore_swigregister(SoftCylinderPairScore)
1047 r"""Proxy of C++ IMP::misc::DecayPairContainerOptimizerState class."""
1049 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1051 def __init__(self, *args):
1052 r"""__init__(DecayPairContainerOptimizerState self, Model m, PairPredicate pred, IMP::ParticleIndexPairs const & initial_list, std::string name="DecayPairContainerOptimizerState%1%") -> DecayPairContainerOptimizerState"""
1053 _IMP_misc.DecayPairContainerOptimizerState_swiginit(self, _IMP_misc.new_DecayPairContainerOptimizerState(*args))
1055 def get_output_container(self):
1056 r"""get_output_container(DecayPairContainerOptimizerState self) -> PairContainer"""
1057 return _IMP_misc.DecayPairContainerOptimizerState_get_output_container(self)
1059 def do_update(self, call_num):
1060 r"""do_update(DecayPairContainerOptimizerState self, unsigned int call_num)"""
1061 return _IMP_misc.DecayPairContainerOptimizerState_do_update(self, call_num)
1064 r"""get_version_info(DecayPairContainerOptimizerState self) -> VersionInfo"""
1065 return _IMP_misc.DecayPairContainerOptimizerState_get_version_info(self)
1066 __swig_destroy__ = _IMP_misc.delete_DecayPairContainerOptimizerState
1069 r"""__str__(DecayPairContainerOptimizerState self) -> std::string"""
1070 return _IMP_misc.DecayPairContainerOptimizerState___str__(self)
1073 r"""__repr__(DecayPairContainerOptimizerState self) -> std::string"""
1074 return _IMP_misc.DecayPairContainerOptimizerState___repr__(self)
1078 return _object_cast_to_DecayPairContainerOptimizerState(o)
1082 _IMP_misc.DecayPairContainerOptimizerState_swigregister(DecayPairContainerOptimizerState)
1085 r"""get_module_version() -> std::string const"""
1086 return _IMP_misc.get_module_version()
1089 r"""get_example_path(std::string fname) -> std::string"""
1090 return _IMP_misc.get_example_path(fname)
1093 r"""get_data_path(std::string fname) -> std::string"""
1094 return _IMP_misc.get_data_path(fname)
1096 from .
import _version_check
Abstract class for scoring object(s) of type ParticleIndexPair.
Various classes to hold sets of particles.
const algebra::Sphere3D get_sphere_d_geometry(CustomXYZR d)
Make CGAL functionality available to IMP.
virtual void clear_caches()
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
Composable functors to implement scores via compile-time composition.
ScoreStates maintain invariants in the Model.
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
A decorator for a particle with x,y,z coordinates.
void set_sphere_d_geometry(CustomXYZR d, const algebra::Sphere3D &v)
Basic functionality that is expected to be used by a wide variety of IMP users.
Abstract predicate function.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_module_version()
Return the version of this module, as a string.
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Shared optimizer state that is invoked upon commitment of new coordinates.
void set_check_level(CheckLevel l)
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Abstract single variable functor class for score functions.
double get_distance(const Line3D &s, const Vector3D &p)
Get closest distance between a line and a point.