IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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Functions for helping optimize and understand DOMINO-based sampling. More...
#include <IMP/domino/domino_config.h>
#include "Assignment.h"
#include "Subset.h"
#include "particle_states.h"
#include <IMP/Particle.h>
#include <IMP/SingletonContainer.h>
#include <IMP/RestraintSet.h>
#include <IMP/Model.h>
#include <IMP/container/internal/ClosePairContainer.h>
#include <IMP/display/Writer.h>
#include <IMP/dependency_graph.h>
#include <IMP/statistics/metric_clustering.h>
#include <RMF/HDF5/Group.h>
Go to the source code of this file.
Namespaces | |
IMP | |
Base functionality and abstract base classes for representation, scoring and sampling. | |
IMP::domino | |
Divide-and-conquer inferential optimization in discrete space. | |
Functions | |
double | IMP::domino::get_distance_if_smaller_than (const Subset &s, const Assignment &a, const Assignment &b, ParticleStatesTable *pst, const statistics::Metrics &metrics, double max) |
algebra::VectorKD | IMP::domino::get_embedding (const Subset &s, const Assignment &a, ParticleStatesTable *pst) |
Return an embedding for an assignment. More... | |
Ints | IMP::domino::get_index (const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded) |
Assignment | IMP::domino::get_nearest_assignment (const Subset &s, const algebra::VectorKD &embedding, ParticleStatesTable *pst) |
Return the nearest assignment from an embedding. More... | |
Ints | IMP::domino::get_partial_index (const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded) |
ParticlePairsTemp | IMP::domino::get_possible_interactions (const ParticlesTemp &ps, double max_distance, ParticleStatesTable *pst) |
Debug tools | |
We provide a number of different functions for helping optimize and understand domino-based sampling. These functions expose part of the implementation and are liable to change without notice. | |
void | IMP::domino::load_particle_states (const Subset &s, const Assignment &ss, const ParticleStatesTable *pst) |
Load the appropriate state for each particle in a Subset. More... | |
RestraintsTemp | IMP::domino::get_restraints (const Subset &s, const ParticleStatesTable *pst, const DependencyGraph &dg, RestraintSet *rs) |
Functions for helping optimize and understand DOMINO-based sampling.
Copyright 2007-2022 IMP Inventors. All rights reserved.
Definition in file domino/utility.h.