IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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density analysis tools, such as segmentation More...
#include <IMP/em/DensityMap.h>
#include <IMP/multifit/multifit_config.h>
#include <boost/graph/adjacency_list.hpp>
#include <boost/pending/disjoint_sets.hpp>
#include <boost/graph/incremental_components.hpp>
#include <boost/graph/graph_utility.hpp>
Go to the source code of this file.
Namespaces | |
IMP | |
Base functionality and abstract base classes for representation, scoring and sampling. | |
IMP::multifit | |
Fitting atomic structures into a cryo-electron microscopy density map. | |
Functions | |
IntsList | IMP::multifit::get_connected_components (em::DensityMap *dmap, float threshold, float edge_threshold) |
Return connected components based on density values. More... | |
void | IMP::multifit::get_segmentation (em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename) |
Segment a density map using the anchor graph. More... | |
em::DensityMap * | IMP::multifit::remove_background (em::DensityMap *dmap, float threshold, float edge_threshold) |
Returns a map containing all density without the background. More... | |
density analysis tools, such as segmentation
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Definition in file density_analysis.h.