IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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This is the complete list of members for IMP::atom::Molecule, including all inherited members.
add_child(Hierarchy o) | IMP::atom::Hierarchy | |
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
clear_children() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
create_clone(Hierarchy d) | IMP::atom::Hierarchy | related |
create_clone_one(Hierarchy d) | IMP::atom::Hierarchy | related |
create_fragment(const Hierarchies &ps) | IMP::atom::Hierarchy | related |
Decorator(Model *m, ParticleIndex pi) (defined in IMP::Decorator) | IMP::Decorator | protected |
Decorator() (defined in IMP::Decorator) | IMP::Decorator | protected |
Decorator(ParticleAdaptor p) (defined in IMP::Decorator) | IMP::Decorator | explicitprotected |
DecoratorTraits typedef (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
destroy(Hierarchy d) | IMP::atom::Hierarchy | related |
get_bounding_box(const Hierarchy &h) | IMP::atom::Hierarchy | related |
get_bounding_sphere(const Hierarchy &h) | IMP::atom::Hierarchy | related |
get_by_type(Hierarchy mhd, GetByType t) | IMP::atom::Hierarchy | related |
get_changed_key() | IMP::core::Hierarchy | static |
get_child(unsigned int i) const | IMP::atom::Hierarchy | |
get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_child_index() const | IMP::core::Hierarchy | |
get_children() const | IMP::atom::Hierarchy | |
get_children() const | IMP::atom::Hierarchy | |
get_children_indexes() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_decorator_traits() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_default_decorator_traits() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
get_default_traits() | IMP::core::Hierarchy | static |
get_internal_bonds(Hierarchy mhd) | IMP::atom::Hierarchy | related |
get_is_heterogen(Hierarchy h) | IMP::atom::Hierarchy | related |
get_is_setup(const IMP::ParticleAdaptor &p) (defined in IMP::atom::Molecule) | IMP::atom::Molecule | static |
get_is_setup(Model *m, ParticleIndex pi) (defined in IMP::atom::Molecule) | IMP::atom::Molecule | static |
get_is_setup(const IMP::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
IMP::core::Hierarchy::get_is_setup(Model *, ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
get_is_valid(bool print_info=false) const | IMP::atom::Hierarchy | |
IMP::core::Hierarchy::get_is_valid() const | IMP::Decorator | |
get_leaves(Hierarchy h) | IMP::atom::Hierarchy | related |
get_leaves(const Hierarchies &h) | IMP::atom::Hierarchy | related |
get_model() const | IMP::Decorator | |
get_number_of_children() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_parent() const | IMP::atom::Hierarchy | |
get_particle() const | IMP::Decorator | |
get_particle_index() const | IMP::Decorator | |
get_residue(Hierarchy mhd, unsigned int index) | IMP::atom::Hierarchy | related |
get_root(Hierarchy h) | IMP::atom::Hierarchy | related |
get_traits() | IMP::atom::Hierarchy | static |
Hierarchy(Model *m, ParticleIndex pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
Hierarchy(ParticleAdaptor pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
Hierarchy() | IMP::atom::Hierarchy | |
Hierarchy(IMP::core::Hierarchy h) | IMP::atom::Hierarchy | explicit |
Hierarchy(::IMP::Model *m,::IMP::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
Hierarchy(const IMP::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | explicit |
Molecule() (defined in IMP::atom::Molecule) | IMP::atom::Molecule | |
Molecule(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::atom::Molecule) | IMP::atom::Molecule | |
Molecule(const IMP::ParticleAdaptor &d) (defined in IMP::atom::Molecule) | IMP::atom::Molecule | explicit |
operator Particle *() const (defined in IMP::Decorator) | IMP::Decorator | |
operator ParticleIndex() const (defined in IMP::Decorator) | IMP::Decorator | |
operator->() const (defined in IMP::Decorator) | IMP::Decorator | |
remove_child(unsigned int i) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
setup_particle(Model *m, ParticleIndex pi) | IMP::atom::Molecule | static |
setup_particle(IMP::ParticleAdaptor pa) | IMP::atom::Molecule | static |
setup_particle(Model *m, ParticleIndex pi, Molecule other) | IMP::atom::Molecule | static |
setup_particle(IMP::ParticleAdaptor pa, Molecule other) | IMP::atom::Molecule | static |
IMP::atom::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor()) | IMP::atom::Hierarchy | static |
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
setup_particle(IMP::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
setup_particle(IMP::ParticleAdaptor d, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
setup_particle(Model *m, ParticleIndex pi, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
setup_particle(IMP::ParticleAdaptor d, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
show(std::ostream &out=std::cout) const (defined in IMP::atom::Molecule) | IMP::atom::Molecule | |
IMP::atom::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout) | IMP::atom::Hierarchy | related |
Value() (defined in IMP::Value) | IMP::Value | protected |