IMP Reference Guide
2.20.2
The Integrative Modeling Platform
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This is the complete list of members for IMP::atom::CHARMMParameters, including all inherited members.
add_bonds(Hierarchy mhd) const | IMP::atom::ForceFieldParameters | |
add_bonds(Residue rd) const (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
add_bonds(Residue rd1, Residue rd2) const (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
add_patch(CHARMMPatch *patch) (defined in IMP::atom::CHARMMParameters) | IMP::atom::CHARMMParameters | |
add_radii(Hierarchy mhd, double scale=1.0, FloatKey radius_key=FloatKey("radius")) const | IMP::atom::ForceFieldParameters | |
add_residue_topology(CHARMMIdealResidueTopology *res) (defined in IMP::atom::CHARMMParameters) | IMP::atom::CHARMMParameters | |
add_well_depths(Hierarchy mhd) const | IMP::atom::ForceFieldParameters | |
atom_res_type_2_force_field_atom_type_ (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
AtomTypeMap typedef (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
ChargePair typedef (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
CHARMMParameters(TextInput topology_file_name, TextInput par_file_name=TextInput(), bool translate_names_to_pdb=false) | IMP::atom::CHARMMParameters | |
clear_caches() | IMP::Object | virtual |
create_angles(Particles bonds) const | IMP::atom::CHARMMParameters | |
create_dihedrals(Particles bonds) const | IMP::atom::CHARMMParameters | |
create_topology(Hierarchy hierarchy) const | IMP::atom::CHARMMParameters | |
do_destroy() | IMP::Object | protectedvirtual |
force_field_2_vdW_ (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
ForceFieldParameters() (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | |
get_angle_parameters(std::string type1, std::string type2, std::string type3) const | IMP::atom::CHARMMParameters | |
get_bond_parameters(std::string type1, std::string type2) const | IMP::atom::CHARMMParameters | |
get_check_level() const (defined in IMP::Object) | IMP::Object | |
get_dihedral_parameters(std::string type1, std::string type2, std::string type3, std::string type4) const | IMP::atom::CHARMMParameters | |
get_epsilon(Atom atom) const | IMP::atom::ForceFieldParameters | |
get_epsilon(const String &force_field_atom_type) const (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
get_improper_parameters(std::string type1, std::string type2, std::string type3, std::string type4) const | IMP::atom::CHARMMParameters | |
get_log_level() const (defined in IMP::Object) | IMP::Object | |
get_name() const (defined in IMP::Object) | IMP::Object | |
get_patch(std::string name) const (defined in IMP::atom::CHARMMParameters) | IMP::atom::CHARMMParameters | |
get_radius(Atom atom) const | IMP::atom::ForceFieldParameters | |
get_radius(const String &force_field_atom_type) const (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
get_residue_topology(ResidueType type) const (defined in IMP::atom::CHARMMParameters) | IMP::atom::CHARMMParameters | |
get_type_name() const override (defined in IMP::atom::CHARMMParameters) | IMP::atom::CHARMMParameters | virtual |
get_version_info() const override | IMP::atom::CHARMMParameters | virtual |
NonCopyable() (defined in IMP::NonCopyable) | IMP::NonCopyable | protected |
Object(std::string name) | IMP::Object | protected |
residue_bonds_ (defined in IMP::atom::ForceFieldParameters) | IMP::atom::ForceFieldParameters | protected |
set_check_level(CheckLevel l) | IMP::Object | |
set_log_level(LogLevel l) | IMP::Object | |
set_name(std::string name) (defined in IMP::Object) | IMP::Object | |
set_was_used(bool tf) const | IMP::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::Object) | IMP::Object | |
~CHARMMParameters() (defined in IMP::atom::CHARMMParameters) | IMP::atom::CHARMMParameters | virtual |
~Object() (defined in IMP::Object) | IMP::Object | virtual |