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IMP Reference Guide
2.20.1
The Integrative Modeling Platform
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Generation of projections from models or density maps Copyright 2007-2022 IMP Inventors. All rights reserved. More...
#include <IMP/em2d/em2d_config.h>#include "IMP/em2d/opencv_interface.h"#include "IMP/em2d/ProjectionMask.h"#include "IMP/em2d/Image.h"#include "IMP/em2d/RegistrationResult.h"#include "IMP/em2d/FFToperations.h"#include "IMP/em2d/ImageReaderWriter.h"#include "IMP/algebra/Vector3D.h"#include "IMP/algebra/Rotation3D.h"#include "IMP/algebra/SphericalVector3D.h"#include "IMP/core/XYZR.h"#include "IMP/Pointer.h"#include "IMP.h"#include <complex>#include <algorithm>#include <fstream>#include <cereal/access.hpp>
Include dependency graph for project.h: This graph shows which files directly or indirectly include this file:Go to the source code of this file.
Classes | |
| class | IMP::em2d::ProjectingOptions |
| Parameters given as options to the get_projections() functions. More... | |
| class | IMP::em2d::ProjectingParameters |
| Parameters needed for the core projection routine. More... | |
Namespaces | |
| IMP | |
| Base functionality and abstract base classes for representation, scoring and sampling. | |
| IMP::em2d | |
| Restraints using electron microscopy 2D images (class averages). | |
Typedefs | |
| typedef IMP::Vector < ProjectingOptions > | IMP::em2d::ProjectingOptionsList |
| typedef IMP::Vector < ProjectingParameters > | IMP::em2d::ProjectingParametersList |
Functions | |
| Images | IMP::em2d::create_evenly_distributed_projections (const ParticlesTemp &ps, unsigned int n, const ProjectingOptions &options) |
| void | IMP::em2d::do_project_particles (const ParticlesTemp &ps, cv::Mat &m2, const algebra::Rotation3D &R, const algebra::Vector3D &translation, const ProjectingOptions &options, MasksManagerPtr masks) |
| Projects a set of particles. This is the core function that others call. More... | |
| algebra::Vector2Ds | IMP::em2d::do_project_vectors (const algebra::Vector3Ds &ps, const algebra::Rotation3D &R, const algebra::Vector3D &translation) |
| Project the points contained in Vector3Ds to gen vectors in 2D. More... | |
| algebra::Vector2Ds | IMP::em2d::do_project_vectors (const algebra::Vector3Ds &ps, const algebra::Rotation3D &R, const algebra::Vector3D &translation, const algebra::Vector3D ¢er) |
| Project the points contained in Vector3Ds. More... | |
| unsigned int | IMP::em2d::get_enclosing_image_size (const ParticlesTemp &ps, double pixel_size, unsigned int slack) |
| Get an automatic size for an image that contains the particles. More... | |
| void | IMP::em2d::get_projection (em2d::Image *img, const ParticlesTemp &ps, const RegistrationResult ®, const ProjectingOptions &options, MasksManagerPtr masks=MasksManagerPtr(), String name="") |
| Generates a projection from particles. More... | |
| em2d::Images | IMP::em2d::get_projections (const ParticlesTemp &ps, const algebra::SphericalVector3Ds &vs, int rows, int cols, const ProjectingOptions &options, Strings names=Strings()) |
| Generates projections from particles. More... | |
| em2d::Images | IMP::em2d::get_projections (const ParticlesTemp &ps, const RegistrationResults ®istration_values, int rows, int cols, const ProjectingOptions &options, Strings names=Strings()) |
| Generates projections from particles. More... | |