doc/ref/multifit_8h_source.html

 /**

  *  \file IMP/multifit.h

  *  \brief Include all non-deprecated headers in IMP.multifit.

  *

  *  Copyright 2007-2024 IMP Inventors. All rights reserved.

  */


 #ifndef IMP_MULTIFIT_H

 #define IMP_MULTIFIT_H

 #include <IMP/multifit/AlignmentParams.h>

 #include <IMP/multifit/ComplementarityRestraint.h>

 #include <IMP/multifit/DataPointsAssignment.h>

 #include <IMP/multifit/DensityDataPoints.h>

 #include <IMP/multifit/FittingSolutionRecord.h>

 #include <IMP/multifit/GeometricHash.h>

 #include <IMP/multifit/RadiusOfGyrationRestraint.h>

 #include <IMP/multifit/RigidLeavesRefiner.h>

 #include <IMP/multifit/SettingsData.h>

 #include <IMP/multifit/WeightedExcludedVolumeRestraint.h>

 #include <IMP/multifit/anchor_graph.h>

 #include <IMP/multifit/anchor_utilities.h>

 #include <IMP/multifit/anchors_reader.h>

 #include <IMP/multifit/coarse_molecule.h>

 #include <IMP/multifit/connolly_surface.h>

 #include <IMP/multifit/density_analysis.h>

 #include <IMP/multifit/ensemble_analysis.h>

 #include <IMP/multifit/fft_based_rigid_fitting.h>

 #include <IMP/multifit/fitting_solutions_reader_writer.h>

 #include <IMP/multifit/fitting_states.h>

 #include <IMP/multifit/fitting_tools.h>

 #include <IMP/multifit/fitting_utils.h>

 #include <IMP/multifit/merge_tree_utils.h>

 #include <IMP/multifit/path_reader_writer.h>

 #include <IMP/multifit/pca_based_rigid_fitting.h>

 #include <IMP/multifit/protein_anchors_mapping_reader.h>

 #include <IMP/multifit/proteomics_em_alignment_atomic.h>

 #include <IMP/multifit/proteomics_reader.h>

 #include <IMP/multifit/weighted_excluded_volume.h>

 #endif /* IMP_MULTIFIT_H */

fitting_tools.h
tools for handling fitting records

merge_tree_utils.h

proteomics_reader.h
handles reading of proteomics data

fitting_utils.h
fitting utilities

RigidLeavesRefiner.h
Return all rigid body members that are also hierarchy leaves.

fitting_solutions_reader_writer.h
handles reading and writing MultiFit fitting solutions file

anchor_utilities.h
Common functions in anchor calculations.

ensemble_analysis.h

protein_anchors_mapping_reader.h
handles reading matches between a protein and its anchors

weighted_excluded_volume.h
handles low resolution weighted excluded volume calculation.

GeometricHash.h
Geometric Hashing class.

SettingsData.h
stored multifit settings data

fitting_states.h
Fitting states.

DataPointsAssignment.h
Tools for data points assignment, after anchor point segmentation.

anchor_graph.h
anchor graph utilities

ComplementarityRestraint.h
Calculate weighted excluded volume between rigid bodies.

pca_based_rigid_fitting.h
Performs rigid fitting between a set of particles and a density map.

path_reader_writer.h
Read and write paths.

FittingSolutionRecord.h
stored a multifit fitting solution

AlignmentParams.h
Parameters for alignments.

coarse_molecule.h
coarsen molecule by clustering

density_analysis.h
density analysis tools, such as segmentation

WeightedExcludedVolumeRestraint.h
Calculate weighted excluded volume between rigid bodies.

RadiusOfGyrationRestraint.h
radius of gyration restraint.

proteomics_em_alignment_atomic.h
align proteomics graph to em density map

fft_based_rigid_fitting.h
FFT based fitting.

connolly_surface.h
Generate surface for a set of atoms.

DensityDataPoints.h
Handling of data for anchor points segmentation.

anchors_reader.h
handles reading of anchors data