cnmultifit/__init__.py

# This file was automatically generated by SWIG (https://www.swig.org).
# Version 4.1.1
#
# Do not make changes to this file unless you know what you are doing - modify
# the SWIG interface file instead.


# This wrapper is part of IMP,
# Copyright 2007-2024 IMP Inventors. All rights reserved.

from __future__ import print_function, division, absolute_import



from sys import version_info as _swig_python_version_info
import _IMP_cnmultifit

try:
    import builtins as __builtin__
except ImportError:
    import __builtin__

def _swig_repr(self):
    try:
        strthis = "proxy of " + self.this.__repr__()
    except __builtin__.Exception:
        strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)


def _swig_setattr_nondynamic_instance_variable(set):
    def set_instance_attr(self, name, value):
        if name == "this":
            set(self, name, value)
        elif name == "thisown":
            self.this.own(value)
        elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
            set(self, name, value)
        else:
            raise AttributeError("You cannot add instance attributes to %s" % self)
    return set_instance_attr


def _swig_setattr_nondynamic_class_variable(set):
    def set_class_attr(cls, name, value):
        if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
            set(cls, name, value)
        else:
            raise AttributeError("You cannot add class attributes to %s" % cls)
    return set_class_attr


def _swig_add_metaclass(metaclass):
    """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
    def wrapper(cls):
        return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
    return wrapper


class _SwigNonDynamicMeta(type):
    """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
    __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)


import weakref

class IMP_CNMULTIFIT_SwigPyIterator(object):
    r"""Proxy of C++ swig::IMP_CNMULTIFIT_SwigPyIterator class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_cnmultifit.delete_IMP_CNMULTIFIT_SwigPyIterator

    def value(self):
        r"""value(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_value(self)

    def incr(self, n=1):
        r"""incr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_incr(self, n)

    def decr(self, n=1):
        r"""decr(IMP_CNMULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_decr(self, n)

    def distance(self, x):
        r"""distance(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_distance(self, x)

    def equal(self, x):
        r"""equal(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_equal(self, x)

    def copy(self):
        r"""copy(IMP_CNMULTIFIT_SwigPyIterator self) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_copy(self)

    def next(self):
        r"""next(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_next(self)

    def __next__(self):
        r"""__next__(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___next__(self)

    def previous(self):
        r"""previous(IMP_CNMULTIFIT_SwigPyIterator self) -> PyObject *"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_previous(self)

    def advance(self, n):
        r"""advance(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_advance(self, n)

    def __eq__(self, x):
        r"""__eq__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___eq__(self, x)

    def __ne__(self, x):
        r"""__ne__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> bool"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___ne__(self, x)

    def __iadd__(self, n):
        r"""__iadd__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___iadd__(self, n)

    def __isub__(self, n):
        r"""__isub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___isub__(self, n)

    def __add__(self, n):
        r"""__add__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator"""
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___add__(self, n)

    def __sub__(self, *args):
        r"""
        __sub__(IMP_CNMULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_CNMULTIFIT_SwigPyIterator
        __sub__(IMP_CNMULTIFIT_SwigPyIterator self, IMP_CNMULTIFIT_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator___sub__(self, *args)
    def __iter__(self):
        return self

# Register IMP_CNMULTIFIT_SwigPyIterator in _IMP_cnmultifit:
_IMP_cnmultifit.IMP_CNMULTIFIT_SwigPyIterator_swigregister(IMP_CNMULTIFIT_SwigPyIterator)

_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_cnmultifit.IMP_DEBUG

IMP_RELEASE = _IMP_cnmultifit.IMP_RELEASE

IMP_SILENT = _IMP_cnmultifit.IMP_SILENT

IMP_PROGRESS = _IMP_cnmultifit.IMP_PROGRESS

IMP_TERSE = _IMP_cnmultifit.IMP_TERSE

IMP_VERBOSE = _IMP_cnmultifit.IMP_VERBOSE

IMP_MEMORY = _IMP_cnmultifit.IMP_MEMORY

IMP_NONE = _IMP_cnmultifit.IMP_NONE

IMP_USAGE = _IMP_cnmultifit.IMP_USAGE

IMP_INTERNAL = _IMP_cnmultifit.IMP_INTERNAL

IMP_KERNEL_HAS_LOG4CXX = _IMP_cnmultifit.IMP_KERNEL_HAS_LOG4CXX

IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_cnmultifit.IMP_COMPILER_HAS_CEREAL_RAW_POINTER

IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_cnmultifit.IMP_COMPILER_HAS_DEBUG_VECTOR

IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_cnmultifit.IMP_COMPILER_HAS_RANDOM_SHUFFLE

IMP_COMPILER_HAS_THREE_WAY = _IMP_cnmultifit.IMP_COMPILER_HAS_THREE_WAY

IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_KERNEL_HAS_BOOST_RANDOM

IMP_KERNEL_HAS_NUMPY = _IMP_cnmultifit.IMP_KERNEL_HAS_NUMPY

IMP_KERNEL_HAS_GPERFTOOLS = _IMP_cnmultifit.IMP_KERNEL_HAS_GPERFTOOLS

IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER

IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_cnmultifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER

IMPKERNEL_SHOW_WARNINGS = _IMP_cnmultifit.IMPKERNEL_SHOW_WARNINGS


import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
# Do in two steps so the references are kept until the end of the
# function (deleting references may trigger a fresh call to this method)
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

class _ostream(object):
    r"""Proxy of C++ std::ostream class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args, **kwargs):
        raise AttributeError("No constructor defined")
    __repr__ = _swig_repr

    def write(self, osa_buf):
        r"""write(_ostream self, char const * osa_buf)"""
        return _IMP_cnmultifit._ostream_write(self, osa_buf)

# Register _ostream in _IMP_cnmultifit:
_IMP_cnmultifit._ostream_swigregister(_ostream)
IMP_C_OPEN_BINARY = _IMP_cnmultifit.IMP_C_OPEN_BINARY

import IMP
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_FILESYSTEM

IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS

IMP_CGAL_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_RANDOM

IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CGAL_HAS_BOOST_SYSTEM

IMP_CGAL_HAS_NUMPY = _IMP_cnmultifit.IMP_CGAL_HAS_NUMPY

IMPCGAL_SHOW_WARNINGS = _IMP_cnmultifit.IMPCGAL_SHOW_WARNINGS

import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_IMP_CGAL

IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM

IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS

IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_RANDOM

IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM

IMP_ALGEBRA_HAS_CGAL = _IMP_cnmultifit.IMP_ALGEBRA_HAS_CGAL

IMP_ALGEBRA_HAS_NUMPY = _IMP_cnmultifit.IMP_ALGEBRA_HAS_NUMPY

IMP_ALGEBRA_HAS_ANN = _IMP_cnmultifit.IMP_ALGEBRA_HAS_ANN

IMPALGEBRA_SHOW_WARNINGS = _IMP_cnmultifit.IMPALGEBRA_SHOW_WARNINGS

import IMP.algebra
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_IMP_CGAL

IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM

IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS

IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_RANDOM

IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DISPLAY_HAS_BOOST_SYSTEM

IMP_DISPLAY_HAS_CGAL = _IMP_cnmultifit.IMP_DISPLAY_HAS_CGAL

IMP_DISPLAY_HAS_NUMPY = _IMP_cnmultifit.IMP_DISPLAY_HAS_NUMPY

IMPDISPLAY_SHOW_WARNINGS = _IMP_cnmultifit.IMPDISPLAY_SHOW_WARNINGS

import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL

IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM

IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS

IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM

IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM

IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_CGAL

IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_HDF5

IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_cnmultifit.IMP_SCORE_FUNCTOR_HAS_NUMPY

IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_cnmultifit.IMPSCOREFUNCTOR_SHOW_WARNINGS

import IMP.score_functor
IMP_STATISTICS_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_IMP_CGAL

IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM

IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS

IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_RANDOM

IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_STATISTICS_HAS_BOOST_SYSTEM

IMP_STATISTICS_HAS_CGAL = _IMP_cnmultifit.IMP_STATISTICS_HAS_CGAL

IMP_STATISTICS_HAS_NUMPY = _IMP_cnmultifit.IMP_STATISTICS_HAS_NUMPY

IMPSTATISTICS_SHOW_WARNINGS = _IMP_cnmultifit.IMPSTATISTICS_SHOW_WARNINGS

import IMP.statistics
IMP_CORE_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_CGAL

IMP_CORE_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CORE_HAS_IMP_KERNEL

IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_FILESYSTEM

IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS

IMP_CORE_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_RANDOM

IMP_CORE_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CORE_HAS_BOOST_SYSTEM

IMP_CORE_HAS_CGAL = _IMP_cnmultifit.IMP_CORE_HAS_CGAL

IMP_CORE_HAS_HDF5 = _IMP_cnmultifit.IMP_CORE_HAS_HDF5

IMP_CORE_HAS_NUMPY = _IMP_cnmultifit.IMP_CORE_HAS_NUMPY

IMPCORE_SHOW_WARNINGS = _IMP_cnmultifit.IMPCORE_SHOW_WARNINGS

import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_ALGEBRA

IMP_CONTAINER_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_CGAL

IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_DISPLAY

IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_KERNEL

IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR

IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM

IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS

IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_RANDOM

IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CONTAINER_HAS_BOOST_SYSTEM

IMP_CONTAINER_HAS_CGAL = _IMP_cnmultifit.IMP_CONTAINER_HAS_CGAL

IMP_CONTAINER_HAS_HDF5 = _IMP_cnmultifit.IMP_CONTAINER_HAS_HDF5

IMP_CONTAINER_HAS_NUMPY = _IMP_cnmultifit.IMP_CONTAINER_HAS_NUMPY

IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_CONTAINER_HAS_PYTHON_IHM

IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_cnmultifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP

IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_cnmultifit.IMP_CONTAINER_HAS_ROBIN_MAP

IMPCONTAINER_SHOW_WARNINGS = _IMP_cnmultifit.IMPCONTAINER_SHOW_WARNINGS

import IMP.container
IMP_ATOM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_CGAL

IMP_ATOM_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_KERNEL

IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR

IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS

IMP_ATOM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_RANDOM

IMP_ATOM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_REGEX

IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ATOM_HAS_BOOST_SYSTEM

IMP_ATOM_HAS_CGAL = _IMP_cnmultifit.IMP_ATOM_HAS_CGAL

IMP_ATOM_HAS_HDF5 = _IMP_cnmultifit.IMP_ATOM_HAS_HDF5

IMP_ATOM_HAS_NUMPY = _IMP_cnmultifit.IMP_ATOM_HAS_NUMPY

IMP_ATOM_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_ATOM_HAS_PYTHON_IHM

IMPATOM_SHOW_WARNINGS = _IMP_cnmultifit.IMPATOM_SHOW_WARNINGS

IMP_ATOM_TYPE_INDEX = _IMP_cnmultifit.IMP_ATOM_TYPE_INDEX

IMP_RESIDUE_TYPE_INDEX = _IMP_cnmultifit.IMP_RESIDUE_TYPE_INDEX

IMP_HIERARCHY_TYPE_INDEX = _IMP_cnmultifit.IMP_HIERARCHY_TYPE_INDEX

IMP_CHAIN_TYPE_INDEX = _IMP_cnmultifit.IMP_CHAIN_TYPE_INDEX

import IMP.atom
IMP_EM_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_EM_HAS_IMP_CGAL

IMP_EM_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_EM_HAS_IMP_CONTAINER

IMP_EM_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_EM_HAS_IMP_DISPLAY

IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR

IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_FILESYSTEM

IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS

IMP_EM_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_RANDOM

IMP_EM_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_EM_HAS_BOOST_REGEX

IMP_EM_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_EM_HAS_BOOST_SYSTEM

IMP_EM_HAS_CGAL = _IMP_cnmultifit.IMP_EM_HAS_CGAL

IMP_EM_HAS_HDF5 = _IMP_cnmultifit.IMP_EM_HAS_HDF5

IMP_EM_HAS_NUMPY = _IMP_cnmultifit.IMP_EM_HAS_NUMPY

IMP_EM_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_EM_HAS_PYTHON_IHM

IMPEM_SHOW_WARNINGS = _IMP_cnmultifit.IMPEM_SHOW_WARNINGS

import IMP.em
IMP_SAXS_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_SAXS_HAS_IMP_CGAL

IMP_SAXS_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_SAXS_HAS_IMP_CONTAINER

IMP_SAXS_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_SAXS_HAS_IMP_DISPLAY

IMP_SAXS_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_SAXS_HAS_IMP_KERNEL

IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR

IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_SAXS_HAS_BOOST_FILESYSTEM

IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS

IMP_SAXS_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_SAXS_HAS_BOOST_RANDOM

IMP_SAXS_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_SAXS_HAS_BOOST_REGEX

IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_SAXS_HAS_BOOST_SYSTEM

IMP_SAXS_HAS_CGAL = _IMP_cnmultifit.IMP_SAXS_HAS_CGAL

IMP_SAXS_HAS_HDF5 = _IMP_cnmultifit.IMP_SAXS_HAS_HDF5

IMP_SAXS_HAS_NUMPY = _IMP_cnmultifit.IMP_SAXS_HAS_NUMPY

IMP_SAXS_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_SAXS_HAS_PYTHON_IHM

IMPSAXS_SHOW_WARNINGS = _IMP_cnmultifit.IMPSAXS_SHOW_WARNINGS

import IMP.saxs
IMP_ISD_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_ISD_HAS_IMP_CGAL

IMP_ISD_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_ISD_HAS_IMP_DISPLAY

IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR

IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_ISD_HAS_BOOST_FILESYSTEM

IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS

IMP_ISD_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_ISD_HAS_BOOST_RANDOM

IMP_ISD_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_ISD_HAS_BOOST_REGEX

IMP_ISD_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_ISD_HAS_BOOST_SYSTEM

IMP_ISD_HAS_CGAL = _IMP_cnmultifit.IMP_ISD_HAS_CGAL

IMP_ISD_HAS_HDF5 = _IMP_cnmultifit.IMP_ISD_HAS_HDF5

IMP_ISD_HAS_NUMPY = _IMP_cnmultifit.IMP_ISD_HAS_NUMPY

IMP_ISD_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_ISD_HAS_PYTHON_IHM

IMPISD_SHOW_WARNINGS = _IMP_cnmultifit.IMPISD_SHOW_WARNINGS

import IMP.isd
IMP_RMF_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_IMP_CGAL

IMP_RMF_HAS_IMP_EM = _IMP_cnmultifit.IMP_RMF_HAS_IMP_EM

IMP_RMF_HAS_IMP_SAXS = _IMP_cnmultifit.IMP_RMF_HAS_IMP_SAXS

IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR

IMP_RMF_HAS_IMP_STATISTICS = _IMP_cnmultifit.IMP_RMF_HAS_IMP_STATISTICS

IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_FILESYSTEM

IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS

IMP_RMF_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_RANDOM

IMP_RMF_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_REGEX

IMP_RMF_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_RMF_HAS_BOOST_SYSTEM

IMP_RMF_HAS_CGAL = _IMP_cnmultifit.IMP_RMF_HAS_CGAL

IMP_RMF_HAS_HDF5 = _IMP_cnmultifit.IMP_RMF_HAS_HDF5

IMP_RMF_HAS_NUMPY = _IMP_cnmultifit.IMP_RMF_HAS_NUMPY

IMP_RMF_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_RMF_HAS_PYTHON_IHM

IMPRMF_SHOW_WARNINGS = _IMP_cnmultifit.IMPRMF_SHOW_WARNINGS

import IMP.rmf
import RMF
IMP_DOMINO_HAS_IMP_ATOM = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ATOM

IMP_DOMINO_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_CGAL

IMP_DOMINO_HAS_IMP_EM = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_EM

IMP_DOMINO_HAS_IMP_ISD = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_ISD

IMP_DOMINO_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_KERNEL

IMP_DOMINO_HAS_IMP_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_RMF

IMP_DOMINO_HAS_IMP_SAXS = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SAXS

IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR

IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM

IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS

IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_RANDOM

IMP_DOMINO_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_REGEX

IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_DOMINO_HAS_BOOST_SYSTEM

IMP_DOMINO_HAS_CGAL = _IMP_cnmultifit.IMP_DOMINO_HAS_CGAL

IMP_DOMINO_HAS_HDF5 = _IMP_cnmultifit.IMP_DOMINO_HAS_HDF5

IMP_DOMINO_HAS_NUMPY = _IMP_cnmultifit.IMP_DOMINO_HAS_NUMPY

IMP_DOMINO_HAS_RMF = _IMP_cnmultifit.IMP_DOMINO_HAS_RMF

IMP_DOMINO_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_DOMINO_HAS_PYTHON_IHM

IMPDOMINO_SHOW_WARNINGS = _IMP_cnmultifit.IMPDOMINO_SHOW_WARNINGS

import RMF_HDF5
import IMP.domino
IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CGAL

IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_CONTAINER

IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_DISPLAY

IMP_MULTIFIT_HAS_IMP_ISD = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_ISD

IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_KERNEL

IMP_MULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_RMF

IMP_MULTIFIT_HAS_IMP_SAXS = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SAXS

IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR

IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_GRAPH

IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_RANDOM

IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_REGEX

IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM

IMP_MULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_MULTIFIT_HAS_CGAL

IMP_MULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_MULTIFIT_HAS_HDF5

IMP_MULTIFIT_HAS_NUMPY = _IMP_cnmultifit.IMP_MULTIFIT_HAS_NUMPY

IMP_MULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_MULTIFIT_HAS_RMF

IMP_MULTIFIT_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_MULTIFIT_HAS_PYTHON_IHM

IMPMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPMULTIFIT_SHOW_WARNINGS

import IMP.multifit
IMP_CNMULTIFIT_HAS_IMP_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CGAL

IMP_CNMULTIFIT_HAS_IMP_CONTAINER = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_CONTAINER

IMP_CNMULTIFIT_HAS_IMP_DISPLAY = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DISPLAY

IMP_CNMULTIFIT_HAS_IMP_DOMINO = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_DOMINO

IMP_CNMULTIFIT_HAS_IMP_ISD = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_ISD

IMP_CNMULTIFIT_HAS_IMP_KERNEL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_KERNEL

IMP_CNMULTIFIT_HAS_IMP_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_RMF

IMP_CNMULTIFIT_HAS_IMP_SAXS = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SAXS

IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_IMP_SCORE_FUNCTOR

IMP_CNMULTIFIT_HAS_BOOST_GRAPH = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_GRAPH

IMP_CNMULTIFIT_HAS_BOOST_RANDOM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_RANDOM

IMP_CNMULTIFIT_HAS_BOOST_REGEX = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_REGEX

IMP_CNMULTIFIT_HAS_BOOST_SYSTEM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_BOOST_SYSTEM

IMP_CNMULTIFIT_HAS_CGAL = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_CGAL

IMP_CNMULTIFIT_HAS_FFTW3 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_FFTW3

IMP_CNMULTIFIT_HAS_HDF5 = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_HDF5

IMP_CNMULTIFIT_HAS_NUMPY = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_NUMPY

IMP_CNMULTIFIT_HAS_RMF = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_RMF

IMP_CNMULTIFIT_HAS_PYTHON_IHM = _IMP_cnmultifit.IMP_CNMULTIFIT_HAS_PYTHON_IHM

IMPCNMULTIFIT_SHOW_WARNINGS = _IMP_cnmultifit.IMPCNMULTIFIT_SHOW_WARNINGS


AlignSymmetrics=list
_plural_types.append("AlignSymmetrics")
_value_types.append("AlignSymmetric")


CnSymmAxisDetectors=list
_plural_types.append("CnSymmAxisDetectors")
_value_types.append("CnSymmAxisDetector")


MolCnSymmAxisDetectors=list
_plural_types.append("MolCnSymmAxisDetectors")
_value_types.append("MolCnSymmAxisDetector")

class CnSymmAxisDetector(object):
    r"""Proxy of C++ IMP::cnmultifit::CnSymmAxisDetector class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, *args):
        r"""
        __init__(CnSymmAxisDetector self, int symm_deg, DensityMap dmap, float density_threshold, float top_p=0.8) -> CnSymmAxisDetector
        __init__(CnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> CnSymmAxisDetector
        """
        _IMP_cnmultifit.CnSymmAxisDetector_swiginit(self, _IMP_cnmultifit.new_CnSymmAxisDetector(*args))

    def get_pca(self):
        r"""get_pca(CnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
        return _IMP_cnmultifit.CnSymmAxisDetector_get_pca(self)

    def calc_symm_score(self, symm_axis_ind):
        r"""calc_symm_score(CnSymmAxisDetector self, int symm_axis_ind) -> float"""
        return _IMP_cnmultifit.CnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)

    def get_symmetry_axis(self):
        r"""get_symmetry_axis(CnSymmAxisDetector self) -> Vector3D"""
        return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis(self)

    def get_symmetry_axis_index(self):
        r"""get_symmetry_axis_index(CnSymmAxisDetector self) -> int"""
        return _IMP_cnmultifit.CnSymmAxisDetector_get_symmetry_axis_index(self)

    def get_non_symmetry_axis_length(self):
        r"""get_non_symmetry_axis_length(CnSymmAxisDetector self) -> int"""
        return _IMP_cnmultifit.CnSymmAxisDetector_get_non_symmetry_axis_length(self)

    def show(self, *args):
        r"""show(CnSymmAxisDetector self, _ostream out=std::cout)"""
        return _IMP_cnmultifit.CnSymmAxisDetector_show(self, *args)

    def __str__(self):
        r"""__str__(CnSymmAxisDetector self) -> std::string"""
        return _IMP_cnmultifit.CnSymmAxisDetector___str__(self)

    def __repr__(self):
        r"""__repr__(CnSymmAxisDetector self) -> std::string"""
        return _IMP_cnmultifit.CnSymmAxisDetector___repr__(self)
    __swig_destroy__ = _IMP_cnmultifit.delete_CnSymmAxisDetector

# Register CnSymmAxisDetector in _IMP_cnmultifit:
_IMP_cnmultifit.CnSymmAxisDetector_swigregister(CnSymmAxisDetector)
class MolCnSymmAxisDetector(object):
    r"""Proxy of C++ IMP::cnmultifit::MolCnSymmAxisDetector class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, symm_deg, mhs):
        r"""__init__(MolCnSymmAxisDetector self, int symm_deg, IMP::atom::Hierarchies const & mhs) -> MolCnSymmAxisDetector"""
        _IMP_cnmultifit.MolCnSymmAxisDetector_swiginit(self, _IMP_cnmultifit.new_MolCnSymmAxisDetector(symm_deg, mhs))

    def get_pca(self):
        r"""get_pca(MolCnSymmAxisDetector self) -> PrincipalComponentAnalysis3D"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector_get_pca(self)

    def get_symmetry_axis(self):
        r"""get_symmetry_axis(MolCnSymmAxisDetector self) -> Vector3D"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis(self)

    def get_symmetry_axis_index(self):
        r"""get_symmetry_axis_index(MolCnSymmAxisDetector self) -> int"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector_get_symmetry_axis_index(self)

    def show(self, *args):
        r"""show(MolCnSymmAxisDetector self, _ostream out=std::cout)"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector_show(self, *args)

    def calc_symm_score(self, symm_axis_ind):
        r"""calc_symm_score(MolCnSymmAxisDetector self, int symm_axis_ind) -> float"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector_calc_symm_score(self, symm_axis_ind)

    def __str__(self):
        r"""__str__(MolCnSymmAxisDetector self) -> std::string"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector___str__(self)

    def __repr__(self):
        r"""__repr__(MolCnSymmAxisDetector self) -> std::string"""
        return _IMP_cnmultifit.MolCnSymmAxisDetector___repr__(self)
    __swig_destroy__ = _IMP_cnmultifit.delete_MolCnSymmAxisDetector

# Register MolCnSymmAxisDetector in _IMP_cnmultifit:
_IMP_cnmultifit.MolCnSymmAxisDetector_swigregister(MolCnSymmAxisDetector)
class AlignSymmetric(object):
    r"""Proxy of C++ IMP::cnmultifit::AlignSymmetric class."""

    thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")

    def __init__(self, dmap, threshold, cn_symm_deg):
        r"""__init__(AlignSymmetric self, DensityMap dmap, float threshold, int cn_symm_deg) -> AlignSymmetric"""
        _IMP_cnmultifit.AlignSymmetric_swiginit(self, _IMP_cnmultifit.new_AlignSymmetric(dmap, threshold, cn_symm_deg))

    def get_sorted_principal_values(self):
        r"""get_sorted_principal_values(AlignSymmetric self) -> IMP::Floats"""
        return _IMP_cnmultifit.AlignSymmetric_get_sorted_principal_values(self)

    def score_alignment(self, mhs, max_allowed_diff):
        r"""score_alignment(AlignSymmetric self, IMP::atom::Hierarchies mhs, float max_allowed_diff) -> int"""
        return _IMP_cnmultifit.AlignSymmetric_score_alignment(self, mhs, max_allowed_diff)

    def get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling=True):
        r"""get_symm_axis_alignments_from_model_to_density(AlignSymmetric self, IMP::atom::Hierarchies mhs, bool sample_translation, bool fine_rotation_sampling=True) -> IMP::algebra::Transformation3Ds"""
        return _IMP_cnmultifit.AlignSymmetric_get_symm_axis_alignments_from_model_to_density(self, mhs, sample_translation, fine_rotation_sampling)

    def show(self, *args):
        r"""show(AlignSymmetric self, _ostream out=std::cout)"""
        return _IMP_cnmultifit.AlignSymmetric_show(self, *args)

    def __str__(self):
        r"""__str__(AlignSymmetric self) -> std::string"""
        return _IMP_cnmultifit.AlignSymmetric___str__(self)

    def __repr__(self):
        r"""__repr__(AlignSymmetric self) -> std::string"""
        return _IMP_cnmultifit.AlignSymmetric___repr__(self)
    __swig_destroy__ = _IMP_cnmultifit.delete_AlignSymmetric

# Register AlignSymmetric in _IMP_cnmultifit:
_IMP_cnmultifit.AlignSymmetric_swigregister(AlignSymmetric)

def generate_cn_transformations(mhs, symm_deg):
    r"""generate_cn_transformations(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
    return _IMP_cnmultifit.generate_cn_transformations(mhs, symm_deg)

def generate_translations_along_symm_axis(mhs, symm_deg):
    r"""generate_translations_along_symm_axis(IMP::atom::Hierarchies mhs, int symm_deg) -> IMP::algebra::Transformation3Ds"""
    return _IMP_cnmultifit.generate_translations_along_symm_axis(mhs, symm_deg)

def symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider):
    r"""symmetry_local_fitting(IMP::atom::Hierarchies mhs, int cn_symm_deg, int dn_symm_deg, DensityMap dmap, int num_of_trans_to_consider) -> FittingSolutions"""
    return _IMP_cnmultifit.symmetry_local_fitting(mhs, cn_symm_deg, dn_symm_deg, dmap, num_of_trans_to_consider)

def build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg):
    r"""build_cn_dens_assembly(DensityMap subunit_dens, DensityHeader asmb_dens_header, Transformation3D monomer_t, int symm_deg) -> DensityMap"""
    return _IMP_cnmultifit.build_cn_dens_assembly(subunit_dens, asmb_dens_header, monomer_t, symm_deg)

def transform_cn_assembly(mhs, monomer_t):
    r"""transform_cn_assembly(IMP::atom::Hierarchies mhs, Transformation3D monomer_t)"""
    return _IMP_cnmultifit.transform_cn_assembly(mhs, monomer_t)

def fit_cn_assembly(*args):
    r"""
    fit_cn_assembly(IMP::atom::Hierarchies mhs, int dn_symm_deg, DensityMap dmap, float threshold, AlignSymmetric aligner, bool sample_translation=False, bool fine_rotational_sampling=True) -> FittingSolutions
    fit_cn_assembly(DensityMap asmb_map, MolCnSymmAxisDetector symm_mol, DensityMap dmap, CnSymmAxisDetector symm_map, int symm_deg, float threshold) -> FittingSolutions
    """
    return _IMP_cnmultifit.fit_cn_assembly(*args)

def pca_matching(pca1, pca2, resolution):
    r"""pca_matching(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2, float resolution) -> bool"""
    return _IMP_cnmultifit.pca_matching(pca1, pca2, resolution)

def cn_symm_score(mhs, center, direction, symm_deg):
    r"""cn_symm_score(IMP::atom::Hierarchies mhs, Vector3D center, Vector3D direction, int symm_deg) -> float"""
    return _IMP_cnmultifit.cn_symm_score(mhs, center, direction, symm_deg)

def prune_by_pca(param_fn, sols, dn=1):
    r"""prune_by_pca(std::string const & param_fn, IMP::multifit::FittingSolutionRecords const & sols, int dn=1) -> IMP::multifit::FittingSolutionRecords"""
    return _IMP_cnmultifit.prune_by_pca(param_fn, sols, dn)

def calc_transformation_around_axis(a, b, angle_rad):
    r"""calc_transformation_around_axis(Vector3D a, Vector3D b, float angle_rad) -> Transformation3D"""
    return _IMP_cnmultifit.calc_transformation_around_axis(a, b, angle_rad)

def get_cn_rmsd(mh1, mh2):
    r"""get_cn_rmsd(IMP::atom::Hierarchies mh1, IMP::atom::Hierarchies mh2) -> float"""
    return _IMP_cnmultifit.get_cn_rmsd(mh1, mh2)

def do_all_fitting(*args):
    r"""do_all_fitting(std::string const param_filename, std::string const chimera_filename="")"""
    return _IMP_cnmultifit.do_all_fitting(*args)

def get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model=0, end_model=-1):
    r"""get_rmsd_for_models(std::string const param_filename, std::string const trans_filename, std::string const ref_filename, int start_model=0, int end_model=-1) -> IMP::Floats"""
    return _IMP_cnmultifit.get_rmsd_for_models(param_filename, trans_filename, ref_filename, start_model, end_model)

_all_commands = ["build", "rmsd", "surface",
                 "param", "chimera_models"]


def get_module_version():
    r"""get_module_version() -> std::string const"""
    return _IMP_cnmultifit.get_module_version()

def get_example_path(fname):
    r"""get_example_path(std::string fname) -> std::string"""
    return _IMP_cnmultifit.get_example_path(fname)

def get_data_path(fname):
    r"""get_data_path(std::string fname) -> std::string"""
    return _IMP_cnmultifit.get_data_path(fname)

from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()