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IMP Reference Guide  2.19.0
The Integrative Modeling Platform
mpi/__init__.py
1 # This file was automatically generated by SWIG (https://www.swig.org).
2 # Version 4.1.1
3 #
4 # Do not make changes to this file unless you know what you are doing - modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2023 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 from sys import version_info as _swig_python_version_info
16 import _IMP_mpi
17 
18 try:
19  import builtins as __builtin__
20 except ImportError:
21  import __builtin__
22 
23 def _swig_repr(self):
24  try:
25  strthis = "proxy of " + self.this.__repr__()
26  except __builtin__.Exception:
27  strthis = ""
28  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
29 
30 
31 def _swig_setattr_nondynamic_instance_variable(set):
32  def set_instance_attr(self, name, value):
33  if name == "this":
34  set(self, name, value)
35  elif name == "thisown":
36  self.this.own(value)
37  elif hasattr(self, name) and isinstance(getattr(type(self), name), property):
38  set(self, name, value)
39  else:
40  raise AttributeError("You cannot add instance attributes to %s" % self)
41  return set_instance_attr
42 
43 
44 def _swig_setattr_nondynamic_class_variable(set):
45  def set_class_attr(cls, name, value):
46  if hasattr(cls, name) and not isinstance(getattr(cls, name), property):
47  set(cls, name, value)
48  else:
49  raise AttributeError("You cannot add class attributes to %s" % cls)
50  return set_class_attr
51 
52 
53 def _swig_add_metaclass(metaclass):
54  """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
55  def wrapper(cls):
56  return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
57  return wrapper
58 
59 
60 class _SwigNonDynamicMeta(type):
61  """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
62  __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
63 
64 
65 import weakref
66 
67 class IMP_MPI_SwigPyIterator(object):
68  r"""Proxy of C++ swig::IMP_MPI_SwigPyIterator class."""
69 
70  thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
71 
72  def __init__(self, *args, **kwargs):
73  raise AttributeError("No constructor defined - class is abstract")
74  __repr__ = _swig_repr
75  __swig_destroy__ = _IMP_mpi.delete_IMP_MPI_SwigPyIterator
76 
77  def value(self):
78  r"""value(IMP_MPI_SwigPyIterator self) -> PyObject *"""
79  return _IMP_mpi.IMP_MPI_SwigPyIterator_value(self)
80 
81  def incr(self, n=1):
82  r"""incr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator"""
83  return _IMP_mpi.IMP_MPI_SwigPyIterator_incr(self, n)
84 
85  def decr(self, n=1):
86  r"""decr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator"""
87  return _IMP_mpi.IMP_MPI_SwigPyIterator_decr(self, n)
88 
89  def distance(self, x):
90  r"""distance(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t"""
91  return _IMP_mpi.IMP_MPI_SwigPyIterator_distance(self, x)
92 
93  def equal(self, x):
94  r"""equal(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
95  return _IMP_mpi.IMP_MPI_SwigPyIterator_equal(self, x)
96 
97  def copy(self):
98  r"""copy(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator"""
99  return _IMP_mpi.IMP_MPI_SwigPyIterator_copy(self)
100 
101  def next(self):
102  r"""next(IMP_MPI_SwigPyIterator self) -> PyObject *"""
103  return _IMP_mpi.IMP_MPI_SwigPyIterator_next(self)
104 
105  def __next__(self):
106  r"""__next__(IMP_MPI_SwigPyIterator self) -> PyObject *"""
107  return _IMP_mpi.IMP_MPI_SwigPyIterator___next__(self)
108 
109  def previous(self):
110  r"""previous(IMP_MPI_SwigPyIterator self) -> PyObject *"""
111  return _IMP_mpi.IMP_MPI_SwigPyIterator_previous(self)
112 
113  def advance(self, n):
114  r"""advance(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
115  return _IMP_mpi.IMP_MPI_SwigPyIterator_advance(self, n)
116 
117  def __eq__(self, x):
118  r"""__eq__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
119  return _IMP_mpi.IMP_MPI_SwigPyIterator___eq__(self, x)
120 
121  def __ne__(self, x):
122  r"""__ne__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
123  return _IMP_mpi.IMP_MPI_SwigPyIterator___ne__(self, x)
124 
125  def __iadd__(self, n):
126  r"""__iadd__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
127  return _IMP_mpi.IMP_MPI_SwigPyIterator___iadd__(self, n)
128 
129  def __isub__(self, n):
130  r"""__isub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
131  return _IMP_mpi.IMP_MPI_SwigPyIterator___isub__(self, n)
132 
133  def __add__(self, n):
134  r"""__add__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
135  return _IMP_mpi.IMP_MPI_SwigPyIterator___add__(self, n)
136 
137  def __sub__(self, *args):
138  r"""
139  __sub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator
140  __sub__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t
141  """
142  return _IMP_mpi.IMP_MPI_SwigPyIterator___sub__(self, *args)
143  def __iter__(self):
144  return self
145 
146 # Register IMP_MPI_SwigPyIterator in _IMP_mpi:
147 _IMP_mpi.IMP_MPI_SwigPyIterator_swigregister(IMP_MPI_SwigPyIterator)
148 
149 _value_types=[]
150 _object_types=[]
151 _raii_types=[]
152 _plural_types=[]
153 
154 IMP_DEBUG = _IMP_mpi.IMP_DEBUG
155 
156 IMP_RELEASE = _IMP_mpi.IMP_RELEASE
157 
158 IMP_SILENT = _IMP_mpi.IMP_SILENT
159 
160 IMP_PROGRESS = _IMP_mpi.IMP_PROGRESS
161 
162 IMP_TERSE = _IMP_mpi.IMP_TERSE
163 
164 IMP_VERBOSE = _IMP_mpi.IMP_VERBOSE
165 
166 IMP_MEMORY = _IMP_mpi.IMP_MEMORY
167 
168 IMP_NONE = _IMP_mpi.IMP_NONE
169 
170 IMP_USAGE = _IMP_mpi.IMP_USAGE
171 
172 IMP_INTERNAL = _IMP_mpi.IMP_INTERNAL
173 
174 IMP_KERNEL_HAS_LOG4CXX = _IMP_mpi.IMP_KERNEL_HAS_LOG4CXX
175 
176 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_mpi.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
177 
178 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_mpi.IMP_COMPILER_HAS_DEBUG_VECTOR
179 
180 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_mpi.IMP_COMPILER_HAS_RANDOM_SHUFFLE
181 
182 IMP_COMPILER_HAS_THREE_WAY = _IMP_mpi.IMP_COMPILER_HAS_THREE_WAY
183 
184 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_mpi.IMP_KERNEL_HAS_BOOST_RANDOM
185 
186 IMP_KERNEL_HAS_NUMPY = _IMP_mpi.IMP_KERNEL_HAS_NUMPY
187 
188 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_mpi.IMP_KERNEL_HAS_GPERFTOOLS
189 
190 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
191 
192 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
193 
194 IMPKERNEL_SHOW_WARNINGS = _IMP_mpi.IMPKERNEL_SHOW_WARNINGS
195 
196 
197 import sys
198 class _DirectorObjects(object):
199  """@internal Simple class to keep references to director objects
200  to prevent premature deletion."""
201  def __init__(self):
202  self._objects = []
203  def register(self, obj):
204  """Take a reference to a director object; will only work for
205  refcounted C++ classes"""
206  if hasattr(obj, 'get_ref_count'):
207  self._objects.append(obj)
208  def cleanup(self):
209  """Only drop our reference and allow cleanup by Python if no other
210  Python references exist (we hold 3 references: one in self._objects,
211  one in x, and one in the argument list for getrefcount) *and* no
212  other C++ references exist (the Python object always holds one)"""
213  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
214  or x.get_ref_count() > 1]
215 # Do in two steps so the references are kept until the end of the
216 # function (deleting references may trigger a fresh call to this method)
217  self._objects = objs
218  def get_object_count(self):
219  """Get number of director objects (useful for testing only)"""
220  return len(self._objects)
221 _director_objects = _DirectorObjects()
222 
223 class _ostream(object):
224  r"""Proxy of C++ std::ostream class."""
225 
226  thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
227 
228  def __init__(self, *args, **kwargs):
229  raise AttributeError("No constructor defined")
230  __repr__ = _swig_repr
231 
232  def write(self, osa_buf):
233  r"""write(_ostream self, char const * osa_buf)"""
234  return _IMP_mpi._ostream_write(self, osa_buf)
235 
236 # Register _ostream in _IMP_mpi:
237 _IMP_mpi._ostream_swigregister(_ostream)
238 IMP_C_OPEN_BINARY = _IMP_mpi.IMP_C_OPEN_BINARY
239 
240 import IMP
241 IMP_MPI_HAS_BOOST_FILESYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_FILESYSTEM
242 
243 IMP_MPI_HAS_BOOST_PROGRAMOPTIONS = _IMP_mpi.IMP_MPI_HAS_BOOST_PROGRAMOPTIONS
244 
245 IMP_MPI_HAS_BOOST_RANDOM = _IMP_mpi.IMP_MPI_HAS_BOOST_RANDOM
246 
247 IMP_MPI_HAS_BOOST_SYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_SYSTEM
248 
249 IMP_MPI_HAS_NUMPY = _IMP_mpi.IMP_MPI_HAS_NUMPY
250 
251 IMPMPI_SHOW_WARNINGS = _IMP_mpi.IMPMPI_SHOW_WARNINGS
252 
253 
254 _object_types.append("ReplicaExchange")
255 
256 
257 def _object_cast_to_ReplicaExchange(o):
258  r"""_object_cast_to_ReplicaExchange(Object o) -> ReplicaExchange"""
259  return _IMP_mpi._object_cast_to_ReplicaExchange(o)
260 class ReplicaExchange(IMP.Object):
261  r"""Proxy of C++ IMP::mpi::ReplicaExchange class."""
262 
263  thisown = property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc="The membership flag")
264 
265  def __init__(self):
266  r"""__init__(ReplicaExchange self) -> ReplicaExchange"""
267  _IMP_mpi.ReplicaExchange_swiginit(self, _IMP_mpi.new_ReplicaExchange())
268 
269  def set_my_parameter(self, key, values):
270  r"""set_my_parameter(ReplicaExchange self, std::string key, IMP::Floats values)"""
271  return _IMP_mpi.ReplicaExchange_set_my_parameter(self, key, values)
272 
273  def get_my_parameter(self, key):
274  r"""get_my_parameter(ReplicaExchange self, std::string key) -> IMP::Floats"""
275  return _IMP_mpi.ReplicaExchange_get_my_parameter(self, key)
276 
277  def get_friend_index(self, istep):
278  r"""get_friend_index(ReplicaExchange self, int istep) -> int"""
279  return _IMP_mpi.ReplicaExchange_get_friend_index(self, istep)
280 
281  def get_exchange_array(self):
282  r"""get_exchange_array(ReplicaExchange self) -> IMP::Ints"""
283  return _IMP_mpi.ReplicaExchange_get_exchange_array(self)
284 
285  def get_friend_parameter(self, key, findex):
286  r"""get_friend_parameter(ReplicaExchange self, std::string key, int findex) -> IMP::Floats"""
287  return _IMP_mpi.ReplicaExchange_get_friend_parameter(self, key, findex)
288 
289  def do_exchange(self, myscore0, myscore1, findex):
290  r"""do_exchange(ReplicaExchange self, double myscore0, double myscore1, int findex) -> bool"""
291  return _IMP_mpi.ReplicaExchange_do_exchange(self, myscore0, myscore1, findex)
292 
293  def create_temperatures(self, tmin, tmax, nrep):
294  r"""create_temperatures(ReplicaExchange self, double tmin, double tmax, int nrep) -> IMP::Floats"""
295  return _IMP_mpi.ReplicaExchange_create_temperatures(self, tmin, tmax, nrep)
296 
297  def get_my_index(self):
298  r"""get_my_index(ReplicaExchange self) -> int"""
299  return _IMP_mpi.ReplicaExchange_get_my_index(self)
300 
301  def get_number_of_replicas(self):
302  r"""get_number_of_replicas(ReplicaExchange self) -> int"""
303  return _IMP_mpi.ReplicaExchange_get_number_of_replicas(self)
304 
305  def get_version_info(self):
306  r"""get_version_info(ReplicaExchange self) -> VersionInfo"""
307  return _IMP_mpi.ReplicaExchange_get_version_info(self)
308  __swig_destroy__ = _IMP_mpi.delete_ReplicaExchange
309 
310  def __str__(self):
311  r"""__str__(ReplicaExchange self) -> std::string"""
312  return _IMP_mpi.ReplicaExchange___str__(self)
313 
314  def __repr__(self):
315  r"""__repr__(ReplicaExchange self) -> std::string"""
316  return _IMP_mpi.ReplicaExchange___repr__(self)
317 
318  @staticmethod
319  def get_from(o):
320  return _object_cast_to_ReplicaExchange(o)
321 
322 
323 # Register ReplicaExchange in _IMP_mpi:
324 _IMP_mpi.ReplicaExchange_swigregister(ReplicaExchange)
325 
326 def get_module_version():
327  r"""get_module_version() -> std::string const"""
328  return _IMP_mpi.get_module_version()
329 
330 def get_example_path(fname):
331  r"""get_example_path(std::string fname) -> std::string"""
332  return _IMP_mpi.get_example_path(fname)
333 
334 def get_data_path(fname):
335  r"""get_data_path(std::string fname) -> std::string"""
336  return _IMP_mpi.get_data_path(fname)
337 
338 from . import _version_check
339 _version_check.check_version(get_module_version())
340 __version__ = get_module_version()
341 
342 
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_module_version()
Return the version of this module, as a string.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Common base class for heavy weight IMP objects.
Definition: Object.h:111