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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
rotamer/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_rotamer', [dirname(__file__)])
25  except ImportError:
26  import _IMP_rotamer
27  return _IMP_rotamer
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_rotamer', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_rotamer = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_rotamer
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_ROTAMER_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_ROTAMER_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_rotamer.delete_IMP_ROTAMER_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
127  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
133  incr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
134  """
135  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
141  decr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
142  """
143  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
153  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator"""
158  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
163  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
168  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
173  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
178  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
183  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
188  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
193  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
198  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
203  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator
209  __sub__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_ROTAMER_SwigPyIterator_swigregister = _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_swigregister
216 IMP_ROTAMER_SwigPyIterator_swigregister(IMP_ROTAMER_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_rotamer.IMP_DEBUG_swigconstant(_IMP_rotamer)
226 IMP_DEBUG = _IMP_rotamer.IMP_DEBUG
227 
228 _IMP_rotamer.IMP_RELEASE_swigconstant(_IMP_rotamer)
229 IMP_RELEASE = _IMP_rotamer.IMP_RELEASE
230 
231 _IMP_rotamer.IMP_SILENT_swigconstant(_IMP_rotamer)
232 IMP_SILENT = _IMP_rotamer.IMP_SILENT
233 
234 _IMP_rotamer.IMP_PROGRESS_swigconstant(_IMP_rotamer)
235 IMP_PROGRESS = _IMP_rotamer.IMP_PROGRESS
236 
237 _IMP_rotamer.IMP_TERSE_swigconstant(_IMP_rotamer)
238 IMP_TERSE = _IMP_rotamer.IMP_TERSE
239 
240 _IMP_rotamer.IMP_VERBOSE_swigconstant(_IMP_rotamer)
241 IMP_VERBOSE = _IMP_rotamer.IMP_VERBOSE
242 
243 _IMP_rotamer.IMP_MEMORY_swigconstant(_IMP_rotamer)
244 IMP_MEMORY = _IMP_rotamer.IMP_MEMORY
245 
246 _IMP_rotamer.IMP_NONE_swigconstant(_IMP_rotamer)
247 IMP_NONE = _IMP_rotamer.IMP_NONE
248 
249 _IMP_rotamer.IMP_USAGE_swigconstant(_IMP_rotamer)
250 IMP_USAGE = _IMP_rotamer.IMP_USAGE
251 
252 _IMP_rotamer.IMP_INTERNAL_swigconstant(_IMP_rotamer)
253 IMP_INTERNAL = _IMP_rotamer.IMP_INTERNAL
254 
255 _IMP_rotamer.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_rotamer)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_rotamer.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_rotamer)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_rotamer.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_rotamer)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_rotamer.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_rotamer.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_rotamer)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_rotamer.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_rotamer.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_rotamer)
271 IMP_KERNEL_HAS_NUMPY = _IMP_rotamer.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_rotamer.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_rotamer)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_rotamer.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_rotamer)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_rotamer)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_rotamer.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_rotamer._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_rotamer._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_rotamer.IMP_HAS_NOEXCEPT_swigconstant(_IMP_rotamer)
328 IMP_HAS_NOEXCEPT = _IMP_rotamer.IMP_HAS_NOEXCEPT
329 
330 _IMP_rotamer.IMP_C_OPEN_BINARY_swigconstant(_IMP_rotamer)
331 IMP_C_OPEN_BINARY = _IMP_rotamer.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_rotamer.IMP_CGAL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
344 IMP_CGAL_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_CGAL_HAS_BOOST_SERIALIZATION
345 
346 _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
347 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM
348 
349 _IMP_rotamer.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_rotamer)
350 IMP_CGAL_HAS_NUMPY = _IMP_rotamer.IMP_CGAL_HAS_NUMPY
351 
352 _IMP_rotamer.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
353 IMPCGAL_SHOW_WARNINGS = _IMP_rotamer.IMPCGAL_SHOW_WARNINGS
354 import IMP.cgal
355 
356 _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
357 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL
358 
359 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
360 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
361 
362 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
363 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
364 
365 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
366 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM
367 
368 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
369 IMP_ALGEBRA_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION
370 
371 _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
372 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM
373 
374 _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_rotamer)
375 IMP_ALGEBRA_HAS_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL
376 
377 _IMP_rotamer.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_rotamer)
378 IMP_ALGEBRA_HAS_NUMPY = _IMP_rotamer.IMP_ALGEBRA_HAS_NUMPY
379 
380 _IMP_rotamer.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_rotamer)
381 IMP_ALGEBRA_HAS_ANN = _IMP_rotamer.IMP_ALGEBRA_HAS_ANN
382 
383 _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
384 IMPALGEBRA_SHOW_WARNINGS = _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS
385 import IMP.algebra
386 
387 _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
388 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL
389 
390 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
391 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
392 
393 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
394 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
395 
396 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
397 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM
398 
399 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
400 IMP_DISPLAY_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SERIALIZATION
401 
402 _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
403 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM
404 
405 _IMP_rotamer.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_rotamer)
406 IMP_DISPLAY_HAS_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_CGAL
407 
408 _IMP_rotamer.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_rotamer)
409 IMP_DISPLAY_HAS_NUMPY = _IMP_rotamer.IMP_DISPLAY_HAS_NUMPY
410 
411 _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
412 IMPDISPLAY_SHOW_WARNINGS = _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS
413 import IMP.display
414 
415 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
416 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
417 
418 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
420 
421 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
422 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
425 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
426 
427 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
428 IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION
429 
430 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
431 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
432 
433 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_rotamer)
434 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL
435 
436 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_rotamer)
437 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5
438 
439 _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_rotamer)
440 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_NUMPY
441 
442 _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
443 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS
444 import IMP.score_functor
445 
446 _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
447 IMP_CORE_HAS_IMP_CGAL = _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL
448 
449 _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
450 IMP_CORE_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL
451 
452 _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
453 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM
454 
455 _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
456 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
457 
458 _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
459 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM
460 
461 _IMP_rotamer.IMP_CORE_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
462 IMP_CORE_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_CORE_HAS_BOOST_SERIALIZATION
463 
464 _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
465 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM
466 
467 _IMP_rotamer.IMP_CORE_HAS_CGAL_swigconstant(_IMP_rotamer)
468 IMP_CORE_HAS_CGAL = _IMP_rotamer.IMP_CORE_HAS_CGAL
469 
470 _IMP_rotamer.IMP_CORE_HAS_HDF5_swigconstant(_IMP_rotamer)
471 IMP_CORE_HAS_HDF5 = _IMP_rotamer.IMP_CORE_HAS_HDF5
472 
473 _IMP_rotamer.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_rotamer)
474 IMP_CORE_HAS_NUMPY = _IMP_rotamer.IMP_CORE_HAS_NUMPY
475 
476 _IMP_rotamer.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
477 IMPCORE_SHOW_WARNINGS = _IMP_rotamer.IMPCORE_SHOW_WARNINGS
478 import IMP.core
479 
480 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_rotamer)
481 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA
482 
483 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
484 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL
485 
486 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_rotamer)
487 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY
488 
489 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
490 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL
491 
492 _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rotamer)
493 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
494 
495 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
496 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
497 
498 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
499 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
500 
501 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
502 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM
503 
504 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
505 IMP_CONTAINER_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SERIALIZATION
506 
507 _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
508 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM
509 
510 _IMP_rotamer.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_rotamer)
511 IMP_CONTAINER_HAS_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_CGAL
512 
513 _IMP_rotamer.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_rotamer)
514 IMP_CONTAINER_HAS_HDF5 = _IMP_rotamer.IMP_CONTAINER_HAS_HDF5
515 
516 _IMP_rotamer.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_rotamer)
517 IMP_CONTAINER_HAS_NUMPY = _IMP_rotamer.IMP_CONTAINER_HAS_NUMPY
518 
519 _IMP_rotamer.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_rotamer)
520 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_rotamer.IMP_CONTAINER_HAS_PYTHON_IHM
521 
522 _IMP_rotamer.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_rotamer)
523 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_rotamer.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
524 
525 _IMP_rotamer.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_rotamer)
526 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_rotamer.IMP_CONTAINER_HAS_ROBIN_MAP
527 
528 _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
529 IMPCONTAINER_SHOW_WARNINGS = _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS
530 import IMP.container
531 
532 _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
533 IMP_ATOM_HAS_IMP_CGAL = _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL
534 
535 _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
536 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL
537 
538 _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rotamer)
539 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
540 
541 _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
542 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
543 
544 _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
545 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM
546 
547 _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_rotamer)
548 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX
549 
550 _IMP_rotamer.IMP_ATOM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
551 IMP_ATOM_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_ATOM_HAS_BOOST_SERIALIZATION
552 
553 _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
554 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM
555 
556 _IMP_rotamer.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_rotamer)
557 IMP_ATOM_HAS_CGAL = _IMP_rotamer.IMP_ATOM_HAS_CGAL
558 
559 _IMP_rotamer.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_rotamer)
560 IMP_ATOM_HAS_HDF5 = _IMP_rotamer.IMP_ATOM_HAS_HDF5
561 
562 _IMP_rotamer.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_rotamer)
563 IMP_ATOM_HAS_NUMPY = _IMP_rotamer.IMP_ATOM_HAS_NUMPY
564 
565 _IMP_rotamer.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_rotamer)
566 IMP_ATOM_HAS_PYTHON_IHM = _IMP_rotamer.IMP_ATOM_HAS_PYTHON_IHM
567 
568 _IMP_rotamer.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
569 IMPATOM_SHOW_WARNINGS = _IMP_rotamer.IMPATOM_SHOW_WARNINGS
570 
571 _IMP_rotamer.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_rotamer)
572 IMP_ATOM_TYPE_INDEX = _IMP_rotamer.IMP_ATOM_TYPE_INDEX
573 
574 _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_rotamer)
575 IMP_RESIDUE_TYPE_INDEX = _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX
576 
577 _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_rotamer)
578 IMP_HIERARCHY_TYPE_INDEX = _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX
579 
580 _IMP_rotamer.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_rotamer)
581 IMP_CHAIN_TYPE_INDEX = _IMP_rotamer.IMP_CHAIN_TYPE_INDEX
582 import IMP.atom
583 
584 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA_swigconstant(_IMP_rotamer)
585 IMP_ROTAMER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA
586 
587 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL_swigconstant(_IMP_rotamer)
588 IMP_ROTAMER_HAS_IMP_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL
589 
590 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER_swigconstant(_IMP_rotamer)
591 IMP_ROTAMER_HAS_IMP_CONTAINER = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER
592 
593 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY_swigconstant(_IMP_rotamer)
594 IMP_ROTAMER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY
595 
596 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL_swigconstant(_IMP_rotamer)
597 IMP_ROTAMER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL
598 
599 _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rotamer)
600 IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR
601 
602 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rotamer)
603 IMP_ROTAMER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM
604 
605 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rotamer)
606 IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS
607 
608 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM_swigconstant(_IMP_rotamer)
609 IMP_ROTAMER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM
610 
611 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX_swigconstant(_IMP_rotamer)
612 IMP_ROTAMER_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX
613 
614 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rotamer)
615 IMP_ROTAMER_HAS_BOOST_SERIALIZATION = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SERIALIZATION
616 
617 _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM_swigconstant(_IMP_rotamer)
618 IMP_ROTAMER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM
619 
620 _IMP_rotamer.IMP_ROTAMER_HAS_CGAL_swigconstant(_IMP_rotamer)
621 IMP_ROTAMER_HAS_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_CGAL
622 
623 _IMP_rotamer.IMP_ROTAMER_HAS_HDF5_swigconstant(_IMP_rotamer)
624 IMP_ROTAMER_HAS_HDF5 = _IMP_rotamer.IMP_ROTAMER_HAS_HDF5
625 
626 _IMP_rotamer.IMP_ROTAMER_HAS_NUMPY_swigconstant(_IMP_rotamer)
627 IMP_ROTAMER_HAS_NUMPY = _IMP_rotamer.IMP_ROTAMER_HAS_NUMPY
628 
629 _IMP_rotamer.IMP_ROTAMER_HAS_PYTHON_IHM_swigconstant(_IMP_rotamer)
630 IMP_ROTAMER_HAS_PYTHON_IHM = _IMP_rotamer.IMP_ROTAMER_HAS_PYTHON_IHM
631 
632 _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS_swigconstant(_IMP_rotamer)
633 IMPROTAMER_SHOW_WARNINGS = _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS
634 
635 RotamerAngleTuples=list
636 _plural_types.append("RotamerAngleTuples")
637 _value_types.append("RotamerAngleTuple")
638 
639 
640 ResidueRotamers=list
641 _plural_types.append("ResidueRotamers")
642 _value_types.append("ResidueRotamer")
643 
644 
645 _object_types.append("RotamerLibrary")
646 
647 
648 def _object_cast_to_RotamerLibrary(o):
649  """_object_cast_to_RotamerLibrary(Object o) -> RotamerLibrary"""
650  return _IMP_rotamer._object_cast_to_RotamerLibrary(o)
651 
652 _object_types.append("RotamerCalculator")
653 
654 
655 def _object_cast_to_RotamerCalculator(o):
656  """_object_cast_to_RotamerCalculator(Object o) -> RotamerCalculator"""
657  return _IMP_rotamer._object_cast_to_RotamerCalculator(o)
658 class RotamerAngleTuple(object):
659  """Proxy of C++ IMP::rotamer::RotamerAngleTuple class"""
660  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
661 
662  def __init__(self, *args):
663  """
664  __init__(IMP::rotamer::RotamerAngleTuple self) -> RotamerAngleTuple
665  __init__(IMP::rotamer::RotamerAngleTuple self, float chi1, float chi2, float chi3, float chi4, float probability) -> RotamerAngleTuple
666  """
667  this = _IMP_rotamer.new_RotamerAngleTuple(*args)
668  try:
669  self.this.append(this)
670  except:
671  self.this = this
672 
673  def get_chi1(self):
674  """get_chi1(RotamerAngleTuple self) -> float"""
675  return _IMP_rotamer.RotamerAngleTuple_get_chi1(self)
676 
677 
678  def get_chi2(self):
679  """get_chi2(RotamerAngleTuple self) -> float"""
680  return _IMP_rotamer.RotamerAngleTuple_get_chi2(self)
681 
682 
683  def get_chi3(self):
684  """get_chi3(RotamerAngleTuple self) -> float"""
685  return _IMP_rotamer.RotamerAngleTuple_get_chi3(self)
686 
687 
688  def get_chi4(self):
689  """get_chi4(RotamerAngleTuple self) -> float"""
690  return _IMP_rotamer.RotamerAngleTuple_get_chi4(self)
691 
692 
693  def get_probability(self):
694  """get_probability(RotamerAngleTuple self) -> float"""
695  return _IMP_rotamer.RotamerAngleTuple_get_probability(self)
696 
697 
698  def show(self, *args):
699  """
700  show(RotamerAngleTuple self, _ostream out)
701  show(RotamerAngleTuple self)
702  """
703  return _IMP_rotamer.RotamerAngleTuple_show(self, *args)
704 
705 
706  def __str__(self):
707  """__str__(RotamerAngleTuple self) -> std::string"""
708  return _IMP_rotamer.RotamerAngleTuple___str__(self)
709 
710 
711  def __repr__(self):
712  """__repr__(RotamerAngleTuple self) -> std::string"""
713  return _IMP_rotamer.RotamerAngleTuple___repr__(self)
714 
715 
716  def _get_as_binary(self):
717  """_get_as_binary(RotamerAngleTuple self) -> PyObject *"""
718  return _IMP_rotamer.RotamerAngleTuple__get_as_binary(self)
719 
720 
721  def _set_from_binary(self, p):
722  """_set_from_binary(RotamerAngleTuple self, PyObject * p)"""
723  return _IMP_rotamer.RotamerAngleTuple__set_from_binary(self, p)
724 
725 
726  def __getstate__(self):
727  p = self._get_as_binary()
728  if len(self.__dict__) > 1:
729  d = self.__dict__.copy()
730  del d['this']
731  p = (d, p)
732  return p
733 
734  def __setstate__(self, p):
735  if not hasattr(self, 'this'):
736  self.__init__()
737  if isinstance(p, tuple):
738  d, p = p
739  self.__dict__.update(d)
740  return self._set_from_binary(p)
741 
742  __swig_destroy__ = _IMP_rotamer.delete_RotamerAngleTuple
743  __del__ = lambda self: None
744 RotamerAngleTuple_swigregister = _IMP_rotamer.RotamerAngleTuple_swigregister
745 RotamerAngleTuple_swigregister(RotamerAngleTuple)
746 
747 class RotamerLibrary(IMP.Object):
748  """Proxy of C++ IMP::rotamer::RotamerLibrary class"""
749  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
750 
751  def __init__(self, angle_step=10):
752  """
753  __init__(IMP::rotamer::RotamerLibrary self, unsigned int angle_step=10) -> RotamerLibrary
754  __init__(IMP::rotamer::RotamerLibrary self) -> RotamerLibrary
755  """
756  this = _IMP_rotamer.new_RotamerLibrary(angle_step)
757  try:
758  self.this.append(this)
759  except:
760  self.this = this
761 
762  def get_rotamers(self, residue, phi, psi, probability_thr):
763  """get_rotamers(RotamerLibrary self, ResidueType residue, float phi, float psi, float probability_thr) -> IMP::rotamer::RotamerAngleTuples"""
764  return _IMP_rotamer.RotamerLibrary_get_rotamers(self, residue, phi, psi, probability_thr)
765 
766 
767  def read_library_file(self, lib_file_name):
768  """read_library_file(RotamerLibrary self, std::string const & lib_file_name)"""
769  return _IMP_rotamer.RotamerLibrary_read_library_file(self, lib_file_name)
770 
771 
772  def get_version_info(self):
773  """get_version_info(RotamerLibrary self) -> VersionInfo"""
774  return _IMP_rotamer.RotamerLibrary_get_version_info(self)
775 
776 
777  def __str__(self):
778  """__str__(RotamerLibrary self) -> std::string"""
779  return _IMP_rotamer.RotamerLibrary___str__(self)
780 
781 
782  def __repr__(self):
783  """__repr__(RotamerLibrary self) -> std::string"""
784  return _IMP_rotamer.RotamerLibrary___repr__(self)
785 
786 
787  @staticmethod
788  def get_from(o):
789  return _object_cast_to_RotamerLibrary(o)
790 
791 RotamerLibrary_swigregister = _IMP_rotamer.RotamerLibrary_swigregister
792 RotamerLibrary_swigregister(RotamerLibrary)
793 
794 class ResidueRotamer(object):
795  """Proxy of C++ IMP::rotamer::ResidueRotamer class"""
796  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
797 
798  def __init__(self, *args):
799  """
800  __init__(IMP::rotamer::ResidueRotamer self, ResidueType rt) -> ResidueRotamer
801  __init__(IMP::rotamer::ResidueRotamer self) -> ResidueRotamer
802  """
803  this = _IMP_rotamer.new_ResidueRotamer(*args)
804  try:
805  self.this.append(this)
806  except:
807  self.this = this
808 
809  def get_coordinates(self, index, at):
810  """get_coordinates(ResidueRotamer self, unsigned int index, AtomType at) -> Vector3D"""
811  return _IMP_rotamer.ResidueRotamer_get_coordinates(self, index, at)
812 
813 
814  def get_number_of_cases(self, at):
815  """get_number_of_cases(ResidueRotamer self, AtomType at) -> unsigned int"""
816  return _IMP_rotamer.ResidueRotamer_get_number_of_cases(self, at)
817 
818 
819  def get_atom_exists(self, at):
820  """get_atom_exists(ResidueRotamer self, AtomType at) -> bool"""
821  return _IMP_rotamer.ResidueRotamer_get_atom_exists(self, at)
822 
823 
824  def get_size(self):
825  """get_size(ResidueRotamer self) -> unsigned int"""
826  return _IMP_rotamer.ResidueRotamer_get_size(self)
827 
828 
829  def get_probability(self, index):
830  """get_probability(ResidueRotamer self, unsigned int index) -> double"""
831  return _IMP_rotamer.ResidueRotamer_get_probability(self, index)
832 
833 
834  def show(self, *args):
835  """
836  show(ResidueRotamer self, _ostream out)
837  show(ResidueRotamer self)
838  """
839  return _IMP_rotamer.ResidueRotamer_show(self, *args)
840 
841 
842  def __str__(self):
843  """__str__(ResidueRotamer self) -> std::string"""
844  return _IMP_rotamer.ResidueRotamer___str__(self)
845 
846 
847  def __repr__(self):
848  """__repr__(ResidueRotamer self) -> std::string"""
849  return _IMP_rotamer.ResidueRotamer___repr__(self)
850 
851  __swig_destroy__ = _IMP_rotamer.delete_ResidueRotamer
852  __del__ = lambda self: None
853 ResidueRotamer_swigregister = _IMP_rotamer.ResidueRotamer_swigregister
854 ResidueRotamer_swigregister(ResidueRotamer)
855 
856 class RotamerCalculator(IMP.Object):
857  """Proxy of C++ IMP::rotamer::RotamerCalculator class"""
858  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
859 
860  def __init__(self, rl):
861  """__init__(IMP::rotamer::RotamerCalculator self, RotamerLibrary rl) -> RotamerCalculator"""
862  this = _IMP_rotamer.new_RotamerCalculator(rl)
863  try:
864  self.this.append(this)
865  except:
866  self.this = this
867 
868  def get_rotamer(self, rd, thr):
869  """get_rotamer(RotamerCalculator self, Residue rd, double thr) -> ResidueRotamer"""
870  return _IMP_rotamer.RotamerCalculator_get_rotamer(self, rd, thr)
871 
872 
873  def get_version_info(self):
874  """get_version_info(RotamerCalculator self) -> VersionInfo"""
875  return _IMP_rotamer.RotamerCalculator_get_version_info(self)
876 
877 
878  def transform(self, protein, score, thr, K, num_iter):
879  """transform(RotamerCalculator self, Hierarchy protein, PairScore score, double thr, double K, int num_iter)"""
880  return _IMP_rotamer.RotamerCalculator_transform(self, protein, score, thr, K, num_iter)
881 
882 
883  def __str__(self):
884  """__str__(RotamerCalculator self) -> std::string"""
885  return _IMP_rotamer.RotamerCalculator___str__(self)
886 
887 
888  def __repr__(self):
889  """__repr__(RotamerCalculator self) -> std::string"""
890  return _IMP_rotamer.RotamerCalculator___repr__(self)
891 
892 
893  @staticmethod
894  def get_from(o):
895  return _object_cast_to_RotamerCalculator(o)
896 
897 RotamerCalculator_swigregister = _IMP_rotamer.RotamerCalculator_swigregister
898 RotamerCalculator_swigregister(RotamerCalculator)
899 
900 
901 def get_module_version():
902  """get_module_version() -> std::string const"""
903  return _IMP_rotamer.get_module_version()
904 
905 def get_example_path(fname):
906  """get_example_path(std::string fname) -> std::string"""
907  return _IMP_rotamer.get_example_path(fname)
908 
909 def get_data_path(fname):
910  """get_data_path(std::string fname) -> std::string"""
911  return _IMP_rotamer.get_data_path(fname)
912 
913 from . import _version_check
914 _version_check.check_version(get_module_version())
915 __version__ = get_module_version()
916 
917 
918 
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
Composable functors to implement scores via compile-time composition.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
std::string get_module_version()
Return the version of this module, as a string.
void transform(Hierarchy h, const algebra::Transformation3D &tr)
Transform a hierarchy. This is aware of rigid bodies.
Common base class for heavy weight IMP objects.
Definition: Object.h:106
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.
Functionality for loading, creating, manipulating and scoring atomic structures.