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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
version 2.18.0
rmf/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_rmf', [dirname(__file__)])
25  except ImportError:
26  import _IMP_rmf
27  return _IMP_rmf
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_rmf', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_rmf = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_rmf
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_RMF_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_RMF_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_rmf.delete_IMP_RMF_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_RMF_SwigPyIterator self) -> PyObject *"""
127  return _IMP_rmf.IMP_RMF_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_RMF_SwigPyIterator self, size_t n=1) -> IMP_RMF_SwigPyIterator
133  incr(IMP_RMF_SwigPyIterator self) -> IMP_RMF_SwigPyIterator
134  """
135  return _IMP_rmf.IMP_RMF_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_RMF_SwigPyIterator self, size_t n=1) -> IMP_RMF_SwigPyIterator
141  decr(IMP_RMF_SwigPyIterator self) -> IMP_RMF_SwigPyIterator
142  """
143  return _IMP_rmf.IMP_RMF_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_rmf.IMP_RMF_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> bool"""
153  return _IMP_rmf.IMP_RMF_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_RMF_SwigPyIterator self) -> IMP_RMF_SwigPyIterator"""
158  return _IMP_rmf.IMP_RMF_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_RMF_SwigPyIterator self) -> PyObject *"""
163  return _IMP_rmf.IMP_RMF_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_RMF_SwigPyIterator self) -> PyObject *"""
168  return _IMP_rmf.IMP_RMF_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_RMF_SwigPyIterator self) -> PyObject *"""
173  return _IMP_rmf.IMP_RMF_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
178  return _IMP_rmf.IMP_RMF_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> bool"""
183  return _IMP_rmf.IMP_RMF_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> bool"""
188  return _IMP_rmf.IMP_RMF_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
193  return _IMP_rmf.IMP_RMF_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
198  return _IMP_rmf.IMP_RMF_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator"""
203  return _IMP_rmf.IMP_RMF_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_RMF_SwigPyIterator self, ptrdiff_t n) -> IMP_RMF_SwigPyIterator
209  __sub__(IMP_RMF_SwigPyIterator self, IMP_RMF_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_rmf.IMP_RMF_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_RMF_SwigPyIterator_swigregister = _IMP_rmf.IMP_RMF_SwigPyIterator_swigregister
216 IMP_RMF_SwigPyIterator_swigregister(IMP_RMF_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_rmf.IMP_DEBUG_swigconstant(_IMP_rmf)
226 IMP_DEBUG = _IMP_rmf.IMP_DEBUG
227 
228 _IMP_rmf.IMP_RELEASE_swigconstant(_IMP_rmf)
229 IMP_RELEASE = _IMP_rmf.IMP_RELEASE
230 
231 _IMP_rmf.IMP_SILENT_swigconstant(_IMP_rmf)
232 IMP_SILENT = _IMP_rmf.IMP_SILENT
233 
234 _IMP_rmf.IMP_PROGRESS_swigconstant(_IMP_rmf)
235 IMP_PROGRESS = _IMP_rmf.IMP_PROGRESS
236 
237 _IMP_rmf.IMP_TERSE_swigconstant(_IMP_rmf)
238 IMP_TERSE = _IMP_rmf.IMP_TERSE
239 
240 _IMP_rmf.IMP_VERBOSE_swigconstant(_IMP_rmf)
241 IMP_VERBOSE = _IMP_rmf.IMP_VERBOSE
242 
243 _IMP_rmf.IMP_MEMORY_swigconstant(_IMP_rmf)
244 IMP_MEMORY = _IMP_rmf.IMP_MEMORY
245 
246 _IMP_rmf.IMP_NONE_swigconstant(_IMP_rmf)
247 IMP_NONE = _IMP_rmf.IMP_NONE
248 
249 _IMP_rmf.IMP_USAGE_swigconstant(_IMP_rmf)
250 IMP_USAGE = _IMP_rmf.IMP_USAGE
251 
252 _IMP_rmf.IMP_INTERNAL_swigconstant(_IMP_rmf)
253 IMP_INTERNAL = _IMP_rmf.IMP_INTERNAL
254 
255 _IMP_rmf.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_rmf)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_rmf.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_rmf.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_rmf)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rmf.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_rmf.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_rmf)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_rmf.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_rmf.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_rmf)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_rmf.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_rmf.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rmf.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_rmf.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_rmf)
271 IMP_KERNEL_HAS_NUMPY = _IMP_rmf.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_rmf.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_rmf)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_rmf.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_rmf)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_rmf)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_rmf.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_rmf.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_rmf)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_rmf.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_rmf._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_rmf._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_rmf.IMP_HAS_NOEXCEPT_swigconstant(_IMP_rmf)
328 IMP_HAS_NOEXCEPT = _IMP_rmf.IMP_HAS_NOEXCEPT
329 
330 _IMP_rmf.IMP_C_OPEN_BINARY_swigconstant(_IMP_rmf)
331 IMP_C_OPEN_BINARY = _IMP_rmf.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_rmf.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_rmf.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_rmf.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rmf.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_rmf.IMP_CGAL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
344 IMP_CGAL_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_CGAL_HAS_BOOST_SERIALIZATION
345 
346 _IMP_rmf.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
347 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_CGAL_HAS_BOOST_SYSTEM
348 
349 _IMP_rmf.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_rmf)
350 IMP_CGAL_HAS_NUMPY = _IMP_rmf.IMP_CGAL_HAS_NUMPY
351 
352 _IMP_rmf.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_rmf)
353 IMPCGAL_SHOW_WARNINGS = _IMP_rmf.IMPCGAL_SHOW_WARNINGS
354 import IMP.cgal
355 
356 _IMP_rmf.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
357 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rmf.IMP_ALGEBRA_HAS_IMP_CGAL
358 
359 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
360 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
361 
362 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
363 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
364 
365 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
366 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_RANDOM
367 
368 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
369 IMP_ALGEBRA_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION
370 
371 _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
372 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_ALGEBRA_HAS_BOOST_SYSTEM
373 
374 _IMP_rmf.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_rmf)
375 IMP_ALGEBRA_HAS_CGAL = _IMP_rmf.IMP_ALGEBRA_HAS_CGAL
376 
377 _IMP_rmf.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_rmf)
378 IMP_ALGEBRA_HAS_NUMPY = _IMP_rmf.IMP_ALGEBRA_HAS_NUMPY
379 
380 _IMP_rmf.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_rmf)
381 IMP_ALGEBRA_HAS_ANN = _IMP_rmf.IMP_ALGEBRA_HAS_ANN
382 
383 _IMP_rmf.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_rmf)
384 IMPALGEBRA_SHOW_WARNINGS = _IMP_rmf.IMPALGEBRA_SHOW_WARNINGS
385 import IMP.algebra
386 
387 _IMP_rmf.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
388 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rmf.IMP_DISPLAY_HAS_IMP_CGAL
389 
390 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
391 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
392 
393 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
394 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
395 
396 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
397 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_RANDOM
398 
399 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
400 IMP_DISPLAY_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_SERIALIZATION
401 
402 _IMP_rmf.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
403 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_DISPLAY_HAS_BOOST_SYSTEM
404 
405 _IMP_rmf.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_rmf)
406 IMP_DISPLAY_HAS_CGAL = _IMP_rmf.IMP_DISPLAY_HAS_CGAL
407 
408 _IMP_rmf.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_rmf)
409 IMP_DISPLAY_HAS_NUMPY = _IMP_rmf.IMP_DISPLAY_HAS_NUMPY
410 
411 _IMP_rmf.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_rmf)
412 IMPDISPLAY_SHOW_WARNINGS = _IMP_rmf.IMPDISPLAY_SHOW_WARNINGS
413 import IMP.display
414 
415 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
416 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
417 
418 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
420 
421 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
422 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
425 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
426 
427 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
428 IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION
429 
430 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
431 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
432 
433 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_rmf)
434 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_CGAL
435 
436 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_rmf)
437 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_HDF5
438 
439 _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_rmf)
440 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_rmf.IMP_SCORE_FUNCTOR_HAS_NUMPY
441 
442 _IMP_rmf.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_rmf)
443 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rmf.IMPSCOREFUNCTOR_SHOW_WARNINGS
444 import IMP.score_functor
445 
446 _IMP_rmf.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
447 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_rmf.IMP_STATISTICS_HAS_IMP_CGAL
448 
449 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
450 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
451 
452 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
453 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
454 
455 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
456 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_RANDOM
457 
458 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
459 IMP_STATISTICS_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_SERIALIZATION
460 
461 _IMP_rmf.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
462 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_STATISTICS_HAS_BOOST_SYSTEM
463 
464 _IMP_rmf.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_rmf)
465 IMP_STATISTICS_HAS_CGAL = _IMP_rmf.IMP_STATISTICS_HAS_CGAL
466 
467 _IMP_rmf.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_rmf)
468 IMP_STATISTICS_HAS_NUMPY = _IMP_rmf.IMP_STATISTICS_HAS_NUMPY
469 
470 _IMP_rmf.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_rmf)
471 IMPSTATISTICS_SHOW_WARNINGS = _IMP_rmf.IMPSTATISTICS_SHOW_WARNINGS
472 import IMP.statistics
473 
474 _IMP_rmf.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
475 IMP_CORE_HAS_IMP_CGAL = _IMP_rmf.IMP_CORE_HAS_IMP_CGAL
476 
477 _IMP_rmf.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
478 IMP_CORE_HAS_IMP_KERNEL = _IMP_rmf.IMP_CORE_HAS_IMP_KERNEL
479 
480 _IMP_rmf.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
481 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_CORE_HAS_BOOST_FILESYSTEM
482 
483 _IMP_rmf.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
484 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
485 
486 _IMP_rmf.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
487 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rmf.IMP_CORE_HAS_BOOST_RANDOM
488 
489 _IMP_rmf.IMP_CORE_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
490 IMP_CORE_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_CORE_HAS_BOOST_SERIALIZATION
491 
492 _IMP_rmf.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
493 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_CORE_HAS_BOOST_SYSTEM
494 
495 _IMP_rmf.IMP_CORE_HAS_CGAL_swigconstant(_IMP_rmf)
496 IMP_CORE_HAS_CGAL = _IMP_rmf.IMP_CORE_HAS_CGAL
497 
498 _IMP_rmf.IMP_CORE_HAS_HDF5_swigconstant(_IMP_rmf)
499 IMP_CORE_HAS_HDF5 = _IMP_rmf.IMP_CORE_HAS_HDF5
500 
501 _IMP_rmf.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_rmf)
502 IMP_CORE_HAS_NUMPY = _IMP_rmf.IMP_CORE_HAS_NUMPY
503 
504 _IMP_rmf.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_rmf)
505 IMPCORE_SHOW_WARNINGS = _IMP_rmf.IMPCORE_SHOW_WARNINGS
506 import IMP.core
507 
508 _IMP_rmf.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_rmf)
509 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rmf.IMP_CONTAINER_HAS_IMP_ALGEBRA
510 
511 _IMP_rmf.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
512 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rmf.IMP_CONTAINER_HAS_IMP_CGAL
513 
514 _IMP_rmf.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
515 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rmf.IMP_CONTAINER_HAS_IMP_DISPLAY
516 
517 _IMP_rmf.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
518 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rmf.IMP_CONTAINER_HAS_IMP_KERNEL
519 
520 _IMP_rmf.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
521 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
522 
523 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
524 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
525 
526 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
527 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
528 
529 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
530 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_RANDOM
531 
532 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
533 IMP_CONTAINER_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_SERIALIZATION
534 
535 _IMP_rmf.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
536 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_CONTAINER_HAS_BOOST_SYSTEM
537 
538 _IMP_rmf.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_rmf)
539 IMP_CONTAINER_HAS_CGAL = _IMP_rmf.IMP_CONTAINER_HAS_CGAL
540 
541 _IMP_rmf.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_rmf)
542 IMP_CONTAINER_HAS_HDF5 = _IMP_rmf.IMP_CONTAINER_HAS_HDF5
543 
544 _IMP_rmf.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_rmf)
545 IMP_CONTAINER_HAS_NUMPY = _IMP_rmf.IMP_CONTAINER_HAS_NUMPY
546 
547 _IMP_rmf.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
548 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_rmf.IMP_CONTAINER_HAS_PYTHON_IHM
549 
550 _IMP_rmf.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_rmf)
551 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_rmf.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
552 
553 _IMP_rmf.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_rmf)
554 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_rmf.IMP_CONTAINER_HAS_ROBIN_MAP
555 
556 _IMP_rmf.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_rmf)
557 IMPCONTAINER_SHOW_WARNINGS = _IMP_rmf.IMPCONTAINER_SHOW_WARNINGS
558 import IMP.container
559 
560 _IMP_rmf.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
561 IMP_ATOM_HAS_IMP_CGAL = _IMP_rmf.IMP_ATOM_HAS_IMP_CGAL
562 
563 _IMP_rmf.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
564 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rmf.IMP_ATOM_HAS_IMP_KERNEL
565 
566 _IMP_rmf.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
567 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
568 
569 _IMP_rmf.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
570 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
571 
572 _IMP_rmf.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
573 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rmf.IMP_ATOM_HAS_BOOST_RANDOM
574 
575 _IMP_rmf.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
576 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rmf.IMP_ATOM_HAS_BOOST_REGEX
577 
578 _IMP_rmf.IMP_ATOM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
579 IMP_ATOM_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_ATOM_HAS_BOOST_SERIALIZATION
580 
581 _IMP_rmf.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
582 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_ATOM_HAS_BOOST_SYSTEM
583 
584 _IMP_rmf.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_rmf)
585 IMP_ATOM_HAS_CGAL = _IMP_rmf.IMP_ATOM_HAS_CGAL
586 
587 _IMP_rmf.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_rmf)
588 IMP_ATOM_HAS_HDF5 = _IMP_rmf.IMP_ATOM_HAS_HDF5
589 
590 _IMP_rmf.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_rmf)
591 IMP_ATOM_HAS_NUMPY = _IMP_rmf.IMP_ATOM_HAS_NUMPY
592 
593 _IMP_rmf.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
594 IMP_ATOM_HAS_PYTHON_IHM = _IMP_rmf.IMP_ATOM_HAS_PYTHON_IHM
595 
596 _IMP_rmf.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_rmf)
597 IMPATOM_SHOW_WARNINGS = _IMP_rmf.IMPATOM_SHOW_WARNINGS
598 
599 _IMP_rmf.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_rmf)
600 IMP_ATOM_TYPE_INDEX = _IMP_rmf.IMP_ATOM_TYPE_INDEX
601 
602 _IMP_rmf.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_rmf)
603 IMP_RESIDUE_TYPE_INDEX = _IMP_rmf.IMP_RESIDUE_TYPE_INDEX
604 
605 _IMP_rmf.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_rmf)
606 IMP_HIERARCHY_TYPE_INDEX = _IMP_rmf.IMP_HIERARCHY_TYPE_INDEX
607 
608 _IMP_rmf.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_rmf)
609 IMP_CHAIN_TYPE_INDEX = _IMP_rmf.IMP_CHAIN_TYPE_INDEX
610 import IMP.atom
611 
612 _IMP_rmf.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
613 IMP_EM_HAS_IMP_CGAL = _IMP_rmf.IMP_EM_HAS_IMP_CGAL
614 
615 _IMP_rmf.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_rmf)
616 IMP_EM_HAS_IMP_CONTAINER = _IMP_rmf.IMP_EM_HAS_IMP_CONTAINER
617 
618 _IMP_rmf.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
619 IMP_EM_HAS_IMP_DISPLAY = _IMP_rmf.IMP_EM_HAS_IMP_DISPLAY
620 
621 _IMP_rmf.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
622 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_EM_HAS_IMP_SCORE_FUNCTOR
623 
624 _IMP_rmf.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
625 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_EM_HAS_BOOST_FILESYSTEM
626 
627 _IMP_rmf.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
628 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
629 
630 _IMP_rmf.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
631 IMP_EM_HAS_BOOST_RANDOM = _IMP_rmf.IMP_EM_HAS_BOOST_RANDOM
632 
633 _IMP_rmf.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
634 IMP_EM_HAS_BOOST_REGEX = _IMP_rmf.IMP_EM_HAS_BOOST_REGEX
635 
636 _IMP_rmf.IMP_EM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
637 IMP_EM_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_EM_HAS_BOOST_SERIALIZATION
638 
639 _IMP_rmf.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
640 IMP_EM_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_EM_HAS_BOOST_SYSTEM
641 
642 _IMP_rmf.IMP_EM_HAS_CGAL_swigconstant(_IMP_rmf)
643 IMP_EM_HAS_CGAL = _IMP_rmf.IMP_EM_HAS_CGAL
644 
645 _IMP_rmf.IMP_EM_HAS_HDF5_swigconstant(_IMP_rmf)
646 IMP_EM_HAS_HDF5 = _IMP_rmf.IMP_EM_HAS_HDF5
647 
648 _IMP_rmf.IMP_EM_HAS_NUMPY_swigconstant(_IMP_rmf)
649 IMP_EM_HAS_NUMPY = _IMP_rmf.IMP_EM_HAS_NUMPY
650 
651 _IMP_rmf.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
652 IMP_EM_HAS_PYTHON_IHM = _IMP_rmf.IMP_EM_HAS_PYTHON_IHM
653 
654 _IMP_rmf.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_rmf)
655 IMPEM_SHOW_WARNINGS = _IMP_rmf.IMPEM_SHOW_WARNINGS
656 import IMP.em
657 
658 _IMP_rmf.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
659 IMP_SAXS_HAS_IMP_CGAL = _IMP_rmf.IMP_SAXS_HAS_IMP_CGAL
660 
661 _IMP_rmf.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_rmf)
662 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_rmf.IMP_SAXS_HAS_IMP_CONTAINER
663 
664 _IMP_rmf.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
665 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_rmf.IMP_SAXS_HAS_IMP_DISPLAY
666 
667 _IMP_rmf.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_rmf)
668 IMP_SAXS_HAS_IMP_KERNEL = _IMP_rmf.IMP_SAXS_HAS_IMP_KERNEL
669 
670 _IMP_rmf.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
671 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
672 
673 _IMP_rmf.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
674 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_SAXS_HAS_BOOST_FILESYSTEM
675 
676 _IMP_rmf.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
677 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
678 
679 _IMP_rmf.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
680 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_rmf.IMP_SAXS_HAS_BOOST_RANDOM
681 
682 _IMP_rmf.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
683 IMP_SAXS_HAS_BOOST_REGEX = _IMP_rmf.IMP_SAXS_HAS_BOOST_REGEX
684 
685 _IMP_rmf.IMP_SAXS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
686 IMP_SAXS_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_SAXS_HAS_BOOST_SERIALIZATION
687 
688 _IMP_rmf.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
689 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_SAXS_HAS_BOOST_SYSTEM
690 
691 _IMP_rmf.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_rmf)
692 IMP_SAXS_HAS_CGAL = _IMP_rmf.IMP_SAXS_HAS_CGAL
693 
694 _IMP_rmf.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_rmf)
695 IMP_SAXS_HAS_HDF5 = _IMP_rmf.IMP_SAXS_HAS_HDF5
696 
697 _IMP_rmf.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_rmf)
698 IMP_SAXS_HAS_NUMPY = _IMP_rmf.IMP_SAXS_HAS_NUMPY
699 
700 _IMP_rmf.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
701 IMP_SAXS_HAS_PYTHON_IHM = _IMP_rmf.IMP_SAXS_HAS_PYTHON_IHM
702 
703 _IMP_rmf.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_rmf)
704 IMPSAXS_SHOW_WARNINGS = _IMP_rmf.IMPSAXS_SHOW_WARNINGS
705 import IMP.saxs
706 
707 _IMP_rmf.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
708 IMP_ISD_HAS_IMP_CGAL = _IMP_rmf.IMP_ISD_HAS_IMP_CGAL
709 
710 _IMP_rmf.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_rmf)
711 IMP_ISD_HAS_IMP_DISPLAY = _IMP_rmf.IMP_ISD_HAS_IMP_DISPLAY
712 
713 _IMP_rmf.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
714 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
715 
716 _IMP_rmf.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
717 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_ISD_HAS_BOOST_FILESYSTEM
718 
719 _IMP_rmf.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
720 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
721 
722 _IMP_rmf.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
723 IMP_ISD_HAS_BOOST_RANDOM = _IMP_rmf.IMP_ISD_HAS_BOOST_RANDOM
724 
725 _IMP_rmf.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
726 IMP_ISD_HAS_BOOST_REGEX = _IMP_rmf.IMP_ISD_HAS_BOOST_REGEX
727 
728 _IMP_rmf.IMP_ISD_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
729 IMP_ISD_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_ISD_HAS_BOOST_SERIALIZATION
730 
731 _IMP_rmf.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
732 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_ISD_HAS_BOOST_SYSTEM
733 
734 _IMP_rmf.IMP_ISD_HAS_CGAL_swigconstant(_IMP_rmf)
735 IMP_ISD_HAS_CGAL = _IMP_rmf.IMP_ISD_HAS_CGAL
736 
737 _IMP_rmf.IMP_ISD_HAS_HDF5_swigconstant(_IMP_rmf)
738 IMP_ISD_HAS_HDF5 = _IMP_rmf.IMP_ISD_HAS_HDF5
739 
740 _IMP_rmf.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_rmf)
741 IMP_ISD_HAS_NUMPY = _IMP_rmf.IMP_ISD_HAS_NUMPY
742 
743 _IMP_rmf.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
744 IMP_ISD_HAS_PYTHON_IHM = _IMP_rmf.IMP_ISD_HAS_PYTHON_IHM
745 
746 _IMP_rmf.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_rmf)
747 IMPISD_SHOW_WARNINGS = _IMP_rmf.IMPISD_SHOW_WARNINGS
748 import IMP.isd
749 
750 _IMP_rmf.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_rmf)
751 IMP_RMF_HAS_IMP_CGAL = _IMP_rmf.IMP_RMF_HAS_IMP_CGAL
752 
753 _IMP_rmf.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_rmf)
754 IMP_RMF_HAS_IMP_EM = _IMP_rmf.IMP_RMF_HAS_IMP_EM
755 
756 _IMP_rmf.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_rmf)
757 IMP_RMF_HAS_IMP_SAXS = _IMP_rmf.IMP_RMF_HAS_IMP_SAXS
758 
759 _IMP_rmf.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_rmf)
760 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_rmf.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
761 
762 _IMP_rmf.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_rmf)
763 IMP_RMF_HAS_IMP_STATISTICS = _IMP_rmf.IMP_RMF_HAS_IMP_STATISTICS
764 
765 _IMP_rmf.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_rmf)
766 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_rmf.IMP_RMF_HAS_BOOST_FILESYSTEM
767 
768 _IMP_rmf.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_rmf)
769 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_rmf.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
770 
771 _IMP_rmf.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_rmf)
772 IMP_RMF_HAS_BOOST_RANDOM = _IMP_rmf.IMP_RMF_HAS_BOOST_RANDOM
773 
774 _IMP_rmf.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_rmf)
775 IMP_RMF_HAS_BOOST_REGEX = _IMP_rmf.IMP_RMF_HAS_BOOST_REGEX
776 
777 _IMP_rmf.IMP_RMF_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_rmf)
778 IMP_RMF_HAS_BOOST_SERIALIZATION = _IMP_rmf.IMP_RMF_HAS_BOOST_SERIALIZATION
779 
780 _IMP_rmf.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_rmf)
781 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_rmf.IMP_RMF_HAS_BOOST_SYSTEM
782 
783 _IMP_rmf.IMP_RMF_HAS_CGAL_swigconstant(_IMP_rmf)
784 IMP_RMF_HAS_CGAL = _IMP_rmf.IMP_RMF_HAS_CGAL
785 
786 _IMP_rmf.IMP_RMF_HAS_HDF5_swigconstant(_IMP_rmf)
787 IMP_RMF_HAS_HDF5 = _IMP_rmf.IMP_RMF_HAS_HDF5
788 
789 _IMP_rmf.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_rmf)
790 IMP_RMF_HAS_NUMPY = _IMP_rmf.IMP_RMF_HAS_NUMPY
791 
792 _IMP_rmf.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_rmf)
793 IMP_RMF_HAS_PYTHON_IHM = _IMP_rmf.IMP_RMF_HAS_PYTHON_IHM
794 
795 _IMP_rmf.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_rmf)
796 IMPRMF_SHOW_WARNINGS = _IMP_rmf.IMPRMF_SHOW_WARNINGS
797 import RMF
798 
799 _object_types.append("SaveOptimizerState")
800 
801 
802 def _object_cast_to_SaveOptimizerState(o):
803  """_object_cast_to_SaveOptimizerState(Object o) -> SaveOptimizerState"""
804  return _IMP_rmf._object_cast_to_SaveOptimizerState(o)
805 
806 _object_types.append("LoadLink")
807 
808 
809 def _object_cast_to_LoadLink(o):
810  """_object_cast_to_LoadLink(Object o) -> LoadLink"""
811  return _IMP_rmf._object_cast_to_LoadLink(o)
812 
813 _object_types.append("SaveLink")
814 
815 
816 def _object_cast_to_SaveLink(o):
817  """_object_cast_to_SaveLink(Object o) -> SaveLink"""
818  return _IMP_rmf._object_cast_to_SaveLink(o)
819 
820 _object_types.append("HierarchySaveLink")
821 
822 
823 def _object_cast_to_HierarchySaveLink(o):
824  """_object_cast_to_HierarchySaveLink(Object o) -> HierarchySaveLink"""
825  return _IMP_rmf._object_cast_to_HierarchySaveLink(o)
826 
827 _object_types.append("HierarchyLoadLink")
828 
829 
830 def _object_cast_to_HierarchyLoadLink(o):
831  """_object_cast_to_HierarchyLoadLink(Object o) -> HierarchyLoadLink"""
832  return _IMP_rmf._object_cast_to_HierarchyLoadLink(o)
833 class LoadLink(IMP.Object):
834  """Proxy of C++ IMP::rmf::LoadLink class"""
835  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
836 
837  def do_load(self, fh):
838  """do_load(LoadLink self, FileConstHandle fh)"""
839  return _IMP_rmf.LoadLink_do_load(self, fh)
840 
841 
842  def __init__(self, name):
843  """__init__(IMP::rmf::LoadLink self, std::string name) -> LoadLink"""
844  if self.__class__ == LoadLink:
845  _self = None
846  else:
847  _self = self
848  this = _IMP_rmf.new_LoadLink(_self, name)
849  try:
850  self.this.append(this)
851  except:
852  self.this = this
853 
854  if self.__class__ != LoadLink:
855  _director_objects.register(self)
856 
857 
858 
859 
860  def load(self, fh):
861  """load(LoadLink self, FileConstHandle fh)"""
862  return _IMP_rmf.LoadLink_load(self, fh)
863 
864  __swig_destroy__ = _IMP_rmf.delete_LoadLink
865  __del__ = lambda self: None
866 
867  def __str__(self):
868  """__str__(LoadLink self) -> std::string"""
869  return _IMP_rmf.LoadLink___str__(self)
870 
871 
872  def __repr__(self):
873  """__repr__(LoadLink self) -> std::string"""
874  return _IMP_rmf.LoadLink___repr__(self)
875 
876 
877  @staticmethod
878  def get_from(o):
879  return _object_cast_to_LoadLink(o)
880 
881 
882  def get_type_name(self):
883  return self.__class__.__name__
884  def do_show(self, out):
885  pass
886  def get_version_info(self):
887  if"IMP::rmf" == "IMP":
888  return VersionInfo(self.__module__,
889  __import__(self.__module__).get_module_version())
890  else:
891  return IMP.VersionInfo(self.__module__,
892  __import__(self.__module__).get_module_version())
893  @staticmethod
894  def get_from(o):
895  return _object_cast_to_LoadLink(o)
896 
897  def __disown__(self):
898  self.this.disown()
899  _IMP_rmf.disown_LoadLink(self)
900  return weakref_proxy(self)
901 
902  def do_destroy(self):
903  """do_destroy(LoadLink self)"""
904  return _IMP_rmf.LoadLink_do_destroy(self)
905 
906 LoadLink_swigregister = _IMP_rmf.LoadLink_swigregister
907 LoadLink_swigregister(LoadLink)
908 
909 class SaveLink(IMP.Object):
910  """Proxy of C++ IMP::rmf::SaveLink class"""
911  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
912 
913  def do_save(self, hf):
914  """do_save(SaveLink self, FileHandle hf)"""
915  return _IMP_rmf.SaveLink_do_save(self, hf)
916 
917 
918  def __init__(self, name):
919  """__init__(IMP::rmf::SaveLink self, std::string name) -> SaveLink"""
920  if self.__class__ == SaveLink:
921  _self = None
922  else:
923  _self = self
924  this = _IMP_rmf.new_SaveLink(_self, name)
925  try:
926  self.this.append(this)
927  except:
928  self.this = this
929 
930  if self.__class__ != SaveLink:
931  _director_objects.register(self)
932 
933 
934 
935 
936  def save(self, fh):
937  """save(SaveLink self, FileHandle fh)"""
938  return _IMP_rmf.SaveLink_save(self, fh)
939 
940  __swig_destroy__ = _IMP_rmf.delete_SaveLink
941  __del__ = lambda self: None
942 
943  def __str__(self):
944  """__str__(SaveLink self) -> std::string"""
945  return _IMP_rmf.SaveLink___str__(self)
946 
947 
948  def __repr__(self):
949  """__repr__(SaveLink self) -> std::string"""
950  return _IMP_rmf.SaveLink___repr__(self)
951 
952 
953  @staticmethod
954  def get_from(o):
955  return _object_cast_to_SaveLink(o)
956 
957 
958  def get_type_name(self):
959  return self.__class__.__name__
960  def do_show(self, out):
961  pass
962  def get_version_info(self):
963  if"IMP::rmf" == "IMP":
964  return VersionInfo(self.__module__,
965  __import__(self.__module__).get_module_version())
966  else:
967  return IMP.VersionInfo(self.__module__,
968  __import__(self.__module__).get_module_version())
969  @staticmethod
970  def get_from(o):
971  return _object_cast_to_SaveLink(o)
972 
973  def __disown__(self):
974  self.this.disown()
975  _IMP_rmf.disown_SaveLink(self)
976  return weakref_proxy(self)
977 
978  def do_destroy(self):
979  """do_destroy(SaveLink self)"""
980  return _IMP_rmf.SaveLink_do_destroy(self)
981 
982 SaveLink_swigregister = _IMP_rmf.SaveLink_swigregister
983 SaveLink_swigregister(SaveLink)
984 
985 
986 def add_hierarchies(*args):
987  """
988  add_hierarchies(FileHandle fh, IMP::atom::Hierarchies const & hs)
989  add_hierarchies(NodeHandle fh, IMP::atom::Hierarchies const & hs)
990  """
991  return _IMP_rmf.add_hierarchies(*args)
992 
993 def add_hierarchy(fh, hs):
994  """add_hierarchy(FileHandle fh, Hierarchy hs)"""
995  return _IMP_rmf.add_hierarchy(fh, hs)
996 
997 def create_hierarchies(fh, m):
998  """create_hierarchies(FileConstHandle fh, Model m) -> IMP::atom::Hierarchies"""
999  return _IMP_rmf.create_hierarchies(fh, m)
1000 
1001 def link_hierarchies(fh, hs):
1002  """link_hierarchies(FileConstHandle fh, IMP::atom::Hierarchies const & hs)"""
1003  return _IMP_rmf.link_hierarchies(fh, hs)
1004 
1005 def add_restraints(*args):
1006  """
1007  add_restraints(FileHandle fh, IMP::Restraints const & hs)
1008  add_restraints(NodeHandle fh, IMP::Restraints const & hs)
1009  """
1010  return _IMP_rmf.add_restraints(*args)
1011 
1012 def add_restraint(fh, hs):
1013  """add_restraint(FileHandle fh, Restraint hs)"""
1014  return _IMP_rmf.add_restraint(fh, hs)
1015 
1016 def create_restraints(fh, m):
1017  """create_restraints(FileConstHandle fh, Model m) -> IMP::Restraints"""
1018  return _IMP_rmf.create_restraints(fh, m)
1019 
1020 def link_restraints(fh, hs):
1021  """link_restraints(FileConstHandle fh, IMP::Restraints const & hs)"""
1022  return _IMP_rmf.link_restraints(fh, hs)
1023 
1024 def add_restraints_as_bonds(fh, rs):
1025  """add_restraints_as_bonds(FileHandle fh, IMP::Restraints const & rs)"""
1026  return _IMP_rmf.add_restraints_as_bonds(fh, rs)
1027 
1028 def set_maximum_number_of_terms(fh, num):
1029  """set_maximum_number_of_terms(FileHandle fh, unsigned int num)"""
1030  return _IMP_rmf.set_maximum_number_of_terms(fh, num)
1031 
1032 def add_particles(*args):
1033  """
1034  add_particles(FileHandle fh, IMP::ParticlesTemp const & hs)
1035  add_particles(NodeHandle fh, IMP::ParticlesTemp const & hs)
1036  """
1037  return _IMP_rmf.add_particles(*args)
1038 
1039 def add_particle(fh, hs):
1040  """add_particle(FileHandle fh, Particle hs)"""
1041  return _IMP_rmf.add_particle(fh, hs)
1042 
1043 def create_particles(fh, m):
1044  """create_particles(FileConstHandle fh, Model m) -> IMP::ParticlesTemp"""
1045  return _IMP_rmf.create_particles(fh, m)
1046 
1047 def link_particles(fh, hs):
1048  """link_particles(FileConstHandle fh, IMP::ParticlesTemp const & hs)"""
1049  return _IMP_rmf.link_particles(fh, hs)
1050 
1051 def add_geometries(*args):
1052  """
1053  add_geometries(FileHandle file, IMP::display::GeometriesTemp const & r)
1054  add_geometries(NodeHandle parent, IMP::display::GeometriesTemp const & r)
1055  """
1056  return _IMP_rmf.add_geometries(*args)
1057 
1058 def add_static_geometries(parent, r):
1059  """add_static_geometries(FileHandle parent, IMP::display::GeometriesTemp const & r)"""
1060  return _IMP_rmf.add_static_geometries(parent, r)
1061 
1062 def add_geometry(file, r):
1063  """add_geometry(FileHandle file, Geometry r)"""
1064  return _IMP_rmf.add_geometry(file, r)
1065 
1066 def create_geometries(parent):
1067  """create_geometries(FileConstHandle parent) -> IMP::display::Geometries"""
1068  return _IMP_rmf.create_geometries(parent)
1069 
1070 def link_geometries(parent, r):
1071  """link_geometries(FileConstHandle parent, IMP::display::GeometriesTemp const & r)"""
1072  return _IMP_rmf.link_geometries(parent, r)
1073 
1074 def set_association(nh, o, overwrite=False):
1075  """
1076  set_association(NodeConstHandle nh, Object o, bool overwrite=False)
1077  set_association(NodeConstHandle nh, Object o)
1078  """
1079  return _IMP_rmf.set_association(nh, o, overwrite)
1080 
1081 def get_node_from_association(*args):
1082  """
1083  get_node_from_association(FileConstHandle nh, Object oi) -> NodeConstHandle
1084  get_node_from_association(FileHandle nh, Object oi) -> NodeHandle
1085  """
1086  return _IMP_rmf.get_node_from_association(*args)
1087 
1088 def get_has_associated_node(nh, oi):
1089  """get_has_associated_node(FileConstHandle nh, Object oi) -> bool"""
1090  return _IMP_rmf.get_has_associated_node(nh, oi)
1091 class SaveOptimizerState(IMP.OptimizerState):
1092  """Proxy of C++ IMP::rmf::SaveOptimizerState class"""
1093  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1094 
1095  def __init__(self, m, fh):
1096  """__init__(IMP::rmf::SaveOptimizerState self, Model m, FileHandle fh) -> SaveOptimizerState"""
1097  this = _IMP_rmf.new_SaveOptimizerState(m, fh)
1098  try:
1099  self.this.append(this)
1100  except:
1101  self.this = this
1102  def __get_hierarchies(self): return IMP._list_util.VarList(getdimfunc=self.get_number_of_hierarchies, getfunc=self.get_hierarchy, erasefunc=self.erase_hierarchy, appendfunc=self.add_hierarchy, extendfunc=self.add_hierarchies, clearfunc=self.clear_hierarchies, indexfunc=self._python_index_hierarchy)
1103  def __set_hierarchies(self, obj): IMP._list_util.set_varlist(self.hierarchies, obj)
1104  def __del_hierarchies(self): IMP._list_util.del_varlist(self.hierarchies)
1105  hierarchies = property(__get_hierarchies, __set_hierarchies, __del_hierarchies, doc="List of ##ucnames")
1106 
1107  def remove_hierarchy(self, d):
1108  """remove_hierarchy(SaveOptimizerState self, Particle d)"""
1109  return _IMP_rmf.SaveOptimizerState_remove_hierarchy(self, d)
1110 
1111 
1112  def _python_index_hierarchy(self, d, start, stop):
1113  """_python_index_hierarchy(SaveOptimizerState self, Particle d, unsigned int start, unsigned int stop) -> unsigned int"""
1114  return _IMP_rmf.SaveOptimizerState__python_index_hierarchy(self, d, start, stop)
1115 
1116 
1117  def remove_hierarchies(self, d):
1118  """remove_hierarchies(SaveOptimizerState self, IMP::Particles const & d)"""
1119  return _IMP_rmf.SaveOptimizerState_remove_hierarchies(self, d)
1120 
1121 
1122  def set_hierarchies(self, ps):
1123  """set_hierarchies(SaveOptimizerState self, IMP::Particles const & ps)"""
1124  return _IMP_rmf.SaveOptimizerState_set_hierarchies(self, ps)
1125 
1126 
1127  def set_hierarchies_order(self, objs):
1128  """set_hierarchies_order(SaveOptimizerState self, IMP::Particles const & objs)"""
1129  return _IMP_rmf.SaveOptimizerState_set_hierarchies_order(self, objs)
1130 
1131 
1132  def add_hierarchy(self, obj):
1133  """add_hierarchy(SaveOptimizerState self, Particle obj) -> unsigned int"""
1134  return _IMP_rmf.SaveOptimizerState_add_hierarchy(self, obj)
1135 
1136 
1137  def add_hierarchies(self, objs):
1138  """add_hierarchies(SaveOptimizerState self, IMP::Particles const & objs)"""
1139  return _IMP_rmf.SaveOptimizerState_add_hierarchies(self, objs)
1140 
1141 
1142  def clear_hierarchies(self):
1143  """clear_hierarchies(SaveOptimizerState self)"""
1144  return _IMP_rmf.SaveOptimizerState_clear_hierarchies(self)
1145 
1146 
1147  def get_number_of_hierarchies(self):
1148  """get_number_of_hierarchies(SaveOptimizerState self) -> unsigned int"""
1149  return _IMP_rmf.SaveOptimizerState_get_number_of_hierarchies(self)
1150 
1151 
1152  def get_has_hierarchies(self):
1153  """get_has_hierarchies(SaveOptimizerState self) -> bool"""
1154  return _IMP_rmf.SaveOptimizerState_get_has_hierarchies(self)
1155 
1156 
1157  def get_hierarchy(self, i):
1158  """get_hierarchy(SaveOptimizerState self, unsigned int i) -> Particle"""
1159  return _IMP_rmf.SaveOptimizerState_get_hierarchy(self, i)
1160 
1161 
1162  def get_hierarchies(self):
1163  """get_hierarchies(SaveOptimizerState self) -> IMP::Particles"""
1164  return _IMP_rmf.SaveOptimizerState_get_hierarchies(self)
1165 
1166 
1167  def erase_hierarchy(self, i):
1168  """erase_hierarchy(SaveOptimizerState self, unsigned int i)"""
1169  return _IMP_rmf.SaveOptimizerState_erase_hierarchy(self, i)
1170 
1171 
1172  def reserve_hierarchies(self, sz):
1173  """reserve_hierarchies(SaveOptimizerState self, unsigned int sz)"""
1174  return _IMP_rmf.SaveOptimizerState_reserve_hierarchies(self, sz)
1175 
1176  def __get_restraints(self): return IMP._list_util.VarList(getdimfunc=self.get_number_of_restraints, getfunc=self.get_restraint, erasefunc=self.erase_restraint, appendfunc=self.add_restraint, extendfunc=self.add_restraints, clearfunc=self.clear_restraints, indexfunc=self._python_index_restraint)
1177  def __set_restraints(self, obj): IMP._list_util.set_varlist(self.restraints, obj)
1178  def __del_restraints(self): IMP._list_util.del_varlist(self.restraints)
1179  restraints = property(__get_restraints, __set_restraints, __del_restraints, doc="List of ##ucnames")
1180 
1181  def remove_restraint(self, d):
1182  """remove_restraint(SaveOptimizerState self, Restraint d)"""
1183  return _IMP_rmf.SaveOptimizerState_remove_restraint(self, d)
1184 
1185 
1186  def _python_index_restraint(self, d, start, stop):
1187  """_python_index_restraint(SaveOptimizerState self, Restraint d, unsigned int start, unsigned int stop) -> unsigned int"""
1188  return _IMP_rmf.SaveOptimizerState__python_index_restraint(self, d, start, stop)
1189 
1190 
1191  def remove_restraints(self, d):
1192  """remove_restraints(SaveOptimizerState self, IMP::Restraints const & d)"""
1193  return _IMP_rmf.SaveOptimizerState_remove_restraints(self, d)
1194 
1195 
1196  def set_restraints(self, ps):
1197  """set_restraints(SaveOptimizerState self, IMP::Restraints const & ps)"""
1198  return _IMP_rmf.SaveOptimizerState_set_restraints(self, ps)
1199 
1200 
1201  def set_restraints_order(self, objs):
1202  """set_restraints_order(SaveOptimizerState self, IMP::Restraints const & objs)"""
1203  return _IMP_rmf.SaveOptimizerState_set_restraints_order(self, objs)
1204 
1205 
1206  def add_restraint(self, obj):
1207  """add_restraint(SaveOptimizerState self, Restraint obj) -> unsigned int"""
1208  return _IMP_rmf.SaveOptimizerState_add_restraint(self, obj)
1209 
1210 
1211  def add_restraints(self, objs):
1212  """add_restraints(SaveOptimizerState self, IMP::Restraints const & objs)"""
1213  return _IMP_rmf.SaveOptimizerState_add_restraints(self, objs)
1214 
1215 
1216  def clear_restraints(self):
1217  """clear_restraints(SaveOptimizerState self)"""
1218  return _IMP_rmf.SaveOptimizerState_clear_restraints(self)
1219 
1220 
1221  def get_number_of_restraints(self):
1222  """get_number_of_restraints(SaveOptimizerState self) -> unsigned int"""
1223  return _IMP_rmf.SaveOptimizerState_get_number_of_restraints(self)
1224 
1225 
1226  def get_has_restraints(self):
1227  """get_has_restraints(SaveOptimizerState self) -> bool"""
1228  return _IMP_rmf.SaveOptimizerState_get_has_restraints(self)
1229 
1230 
1231  def get_restraint(self, i):
1232  """get_restraint(SaveOptimizerState self, unsigned int i) -> Restraint"""
1233  return _IMP_rmf.SaveOptimizerState_get_restraint(self, i)
1234 
1235 
1236  def get_restraints(self):
1237  """get_restraints(SaveOptimizerState self) -> IMP::Restraints"""
1238  return _IMP_rmf.SaveOptimizerState_get_restraints(self)
1239 
1240 
1241  def erase_restraint(self, i):
1242  """erase_restraint(SaveOptimizerState self, unsigned int i)"""
1243  return _IMP_rmf.SaveOptimizerState_erase_restraint(self, i)
1244 
1245 
1246  def reserve_restraints(self, sz):
1247  """reserve_restraints(SaveOptimizerState self, unsigned int sz)"""
1248  return _IMP_rmf.SaveOptimizerState_reserve_restraints(self, sz)
1249 
1250  def __get_particles(self): return IMP._list_util.VarList(getdimfunc=self.get_number_of_particles, getfunc=self.get_particle, erasefunc=self.erase_particle, appendfunc=self.add_particle, extendfunc=self.add_particles, clearfunc=self.clear_particles, indexfunc=self._python_index_particle)
1251  def __set_particles(self, obj): IMP._list_util.set_varlist(self.particles, obj)
1252  def __del_particles(self): IMP._list_util.del_varlist(self.particles)
1253  particles = property(__get_particles, __set_particles, __del_particles, doc="List of ##ucnames")
1254 
1255  def remove_particle(self, d):
1256  """remove_particle(SaveOptimizerState self, Particle d)"""
1257  return _IMP_rmf.SaveOptimizerState_remove_particle(self, d)
1258 
1259 
1260  def _python_index_particle(self, d, start, stop):
1261  """_python_index_particle(SaveOptimizerState self, Particle d, unsigned int start, unsigned int stop) -> unsigned int"""
1262  return _IMP_rmf.SaveOptimizerState__python_index_particle(self, d, start, stop)
1263 
1264 
1265  def remove_particles(self, d):
1266  """remove_particles(SaveOptimizerState self, IMP::Particles const & d)"""
1267  return _IMP_rmf.SaveOptimizerState_remove_particles(self, d)
1268 
1269 
1270  def set_particles(self, ps):
1271  """set_particles(SaveOptimizerState self, IMP::Particles const & ps)"""
1272  return _IMP_rmf.SaveOptimizerState_set_particles(self, ps)
1273 
1274 
1275  def set_particles_order(self, objs):
1276  """set_particles_order(SaveOptimizerState self, IMP::Particles const & objs)"""
1277  return _IMP_rmf.SaveOptimizerState_set_particles_order(self, objs)
1278 
1279 
1280  def add_particle(self, obj):
1281  """add_particle(SaveOptimizerState self, Particle obj) -> unsigned int"""
1282  return _IMP_rmf.SaveOptimizerState_add_particle(self, obj)
1283 
1284 
1285  def add_particles(self, objs):
1286  """add_particles(SaveOptimizerState self, IMP::Particles const & objs)"""
1287  return _IMP_rmf.SaveOptimizerState_add_particles(self, objs)
1288 
1289 
1290  def clear_particles(self):
1291  """clear_particles(SaveOptimizerState self)"""
1292  return _IMP_rmf.SaveOptimizerState_clear_particles(self)
1293 
1294 
1295  def get_number_of_particles(self):
1296  """get_number_of_particles(SaveOptimizerState self) -> unsigned int"""
1297  return _IMP_rmf.SaveOptimizerState_get_number_of_particles(self)
1298 
1299 
1300  def get_has_particles(self):
1301  """get_has_particles(SaveOptimizerState self) -> bool"""
1302  return _IMP_rmf.SaveOptimizerState_get_has_particles(self)
1303 
1304 
1305  def get_particle(self, i):
1306  """get_particle(SaveOptimizerState self, unsigned int i) -> Particle"""
1307  return _IMP_rmf.SaveOptimizerState_get_particle(self, i)
1308 
1309 
1310  def get_particles(self):
1311  """get_particles(SaveOptimizerState self) -> IMP::Particles"""
1312  return _IMP_rmf.SaveOptimizerState_get_particles(self)
1313 
1314 
1315  def erase_particle(self, i):
1316  """erase_particle(SaveOptimizerState self, unsigned int i)"""
1317  return _IMP_rmf.SaveOptimizerState_erase_particle(self, i)
1318 
1319 
1320  def reserve_particles(self, sz):
1321  """reserve_particles(SaveOptimizerState self, unsigned int sz)"""
1322  return _IMP_rmf.SaveOptimizerState_reserve_particles(self, sz)
1323 
1324  def __get_geometries(self): return IMP._list_util.VarList(getdimfunc=self.get_number_of_geometries, getfunc=self.get_geometry, erasefunc=self.erase_geometry, appendfunc=self.add_geometry, extendfunc=self.add_geometries, clearfunc=self.clear_geometries, indexfunc=self._python_index_geometry)
1325  def __set_geometries(self, obj): IMP._list_util.set_varlist(self.geometries, obj)
1326  def __del_geometries(self): IMP._list_util.del_varlist(self.geometries)
1327  geometries = property(__get_geometries, __set_geometries, __del_geometries, doc="List of ##ucnames")
1328 
1329  def remove_geometry(self, d):
1330  """remove_geometry(SaveOptimizerState self, Geometry d)"""
1331  return _IMP_rmf.SaveOptimizerState_remove_geometry(self, d)
1332 
1333 
1334  def _python_index_geometry(self, d, start, stop):
1335  """_python_index_geometry(SaveOptimizerState self, Geometry d, unsigned int start, unsigned int stop) -> unsigned int"""
1336  return _IMP_rmf.SaveOptimizerState__python_index_geometry(self, d, start, stop)
1337 
1338 
1339  def remove_geometries(self, d):
1340  """remove_geometries(SaveOptimizerState self, IMP::display::Geometries const & d)"""
1341  return _IMP_rmf.SaveOptimizerState_remove_geometries(self, d)
1342 
1343 
1344  def set_geometries(self, ps):
1345  """set_geometries(SaveOptimizerState self, IMP::display::Geometries const & ps)"""
1346  return _IMP_rmf.SaveOptimizerState_set_geometries(self, ps)
1347 
1348 
1349  def set_geometries_order(self, objs):
1350  """set_geometries_order(SaveOptimizerState self, IMP::display::Geometries const & objs)"""
1351  return _IMP_rmf.SaveOptimizerState_set_geometries_order(self, objs)
1352 
1353 
1354  def add_geometry(self, obj):
1355  """add_geometry(SaveOptimizerState self, Geometry obj) -> unsigned int"""
1356  return _IMP_rmf.SaveOptimizerState_add_geometry(self, obj)
1357 
1358 
1359  def add_geometries(self, objs):
1360  """add_geometries(SaveOptimizerState self, IMP::display::Geometries const & objs)"""
1361  return _IMP_rmf.SaveOptimizerState_add_geometries(self, objs)
1362 
1363 
1364  def clear_geometries(self):
1365  """clear_geometries(SaveOptimizerState self)"""
1366  return _IMP_rmf.SaveOptimizerState_clear_geometries(self)
1367 
1368 
1369  def get_number_of_geometries(self):
1370  """get_number_of_geometries(SaveOptimizerState self) -> unsigned int"""
1371  return _IMP_rmf.SaveOptimizerState_get_number_of_geometries(self)
1372 
1373 
1374  def get_has_geometries(self):
1375  """get_has_geometries(SaveOptimizerState self) -> bool"""
1376  return _IMP_rmf.SaveOptimizerState_get_has_geometries(self)
1377 
1378 
1379  def get_geometry(self, i):
1380  """get_geometry(SaveOptimizerState self, unsigned int i) -> Geometry"""
1381  return _IMP_rmf.SaveOptimizerState_get_geometry(self, i)
1382 
1383 
1384  def get_geometries(self):
1385  """get_geometries(SaveOptimizerState self) -> IMP::display::Geometries"""
1386  return _IMP_rmf.SaveOptimizerState_get_geometries(self)
1387 
1388 
1389  def erase_geometry(self, i):
1390  """erase_geometry(SaveOptimizerState self, unsigned int i)"""
1391  return _IMP_rmf.SaveOptimizerState_erase_geometry(self, i)
1392 
1393 
1394  def reserve_geometries(self, sz):
1395  """reserve_geometries(SaveOptimizerState self, unsigned int sz)"""
1396  return _IMP_rmf.SaveOptimizerState_reserve_geometries(self, sz)
1397 
1398 
1399  def set_simulator(self, sim):
1400  """set_simulator(SaveOptimizerState self, Simulator sim)"""
1401  return _IMP_rmf.SaveOptimizerState_set_simulator(self, sim)
1402 
1403 
1404  def update_always(self, *args):
1405  """
1406  update_always(SaveOptimizerState self, std::string name)
1407  update_always(SaveOptimizerState self)
1408  """
1409  return _IMP_rmf.SaveOptimizerState_update_always(self, *args)
1410 
1411 
1412  def do_update(self, call_num):
1413  """do_update(SaveOptimizerState self, unsigned int call_num)"""
1414  return _IMP_rmf.SaveOptimizerState_do_update(self, call_num)
1415 
1416 
1417  def get_version_info(self):
1418  """get_version_info(SaveOptimizerState self) -> VersionInfo"""
1419  return _IMP_rmf.SaveOptimizerState_get_version_info(self)
1420 
1421 
1422  def __str__(self):
1423  """__str__(SaveOptimizerState self) -> std::string"""
1424  return _IMP_rmf.SaveOptimizerState___str__(self)
1425 
1426 
1427  def __repr__(self):
1428  """__repr__(SaveOptimizerState self) -> std::string"""
1429  return _IMP_rmf.SaveOptimizerState___repr__(self)
1430 
1431 
1432  @staticmethod
1433  def get_from(o):
1434  return _object_cast_to_SaveOptimizerState(o)
1435 
1436 SaveOptimizerState_swigregister = _IMP_rmf.SaveOptimizerState_swigregister
1437 SaveOptimizerState_swigregister(SaveOptimizerState)
1438 
1439 
1440 def load_frame(file, frame):
1441  """load_frame(FileConstHandle file, FrameID frame)"""
1442  return _IMP_rmf.load_frame(file, frame)
1443 
1444 def save_frame(*args):
1445  """
1446  save_frame(FileHandle file, std::string name) -> FrameID
1447  save_frame(FileHandle file) -> FrameID
1448  """
1449  return _IMP_rmf.save_frame(*args)
1450 class _ParticleSaveLink(SaveLink):
1451  """Proxy of C++ IMP::rmf::SimpleSaveLink<(IMP::Particle)> class"""
1452  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1453 
1454  def __init__(self, *args, **kwargs):
1455  raise AttributeError("No constructor defined - class is abstract")
1456  __repr__ = _swig_repr
1457 
1458  def add(self, parent, os):
1459  """add(_ParticleSaveLink self, NodeHandle parent, IMP::Vector< Pointer< IMP::Particle > > const & os)"""
1460  return _IMP_rmf._ParticleSaveLink_add(self, parent, os)
1461 
1462  __swig_destroy__ = _IMP_rmf.delete__ParticleSaveLink
1463  __del__ = lambda self: None
1464 _ParticleSaveLink_swigregister = _IMP_rmf._ParticleSaveLink_swigregister
1465 _ParticleSaveLink_swigregister(_ParticleSaveLink)
1466 
1467 class _ParticleLoadLink(LoadLink):
1468  """Proxy of C++ IMP::rmf::SimpleLoadLink<(IMP::Particle)> class"""
1469  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1470 
1471  def __init__(self, *args, **kwargs):
1472  raise AttributeError("No constructor defined - class is abstract")
1473  __repr__ = _swig_repr
1474 
1475  def create(self, *args):
1476  """
1477  create(_ParticleLoadLink self, NodeConstHandle rt) -> IMP::Vector< Pointer< IMP::Particle > >
1478  create(_ParticleLoadLink self, NodeConstHandle rt, Model m) -> IMP::Vector< Pointer< IMP::Particle > >
1479  """
1480  return _IMP_rmf._ParticleLoadLink_create(self, *args)
1481 
1482 
1483  def link(self, rt, ps):
1484  """link(_ParticleLoadLink self, NodeConstHandle rt, IMP::Vector< Pointer< IMP::Particle > > const & ps)"""
1485  return _IMP_rmf._ParticleLoadLink_link(self, rt, ps)
1486 
1487  __swig_destroy__ = _IMP_rmf.delete__ParticleLoadLink
1488  __del__ = lambda self: None
1489 _ParticleLoadLink_swigregister = _IMP_rmf._ParticleLoadLink_swigregister
1490 _ParticleLoadLink_swigregister(_ParticleLoadLink)
1491 
1492 class HierarchyLoadLink(_ParticleLoadLink):
1493  """Proxy of C++ IMP::rmf::HierarchyLoadLink class"""
1494  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1495 
1496  def __init__(self, fh):
1497  """__init__(IMP::rmf::HierarchyLoadLink self, FileConstHandle fh) -> HierarchyLoadLink"""
1498  this = _IMP_rmf.new_HierarchyLoadLink(fh)
1499  try:
1500  self.this.append(this)
1501  except:
1502  self.this = this
1503 
1504  def get_name():
1505  """get_name() -> char const *"""
1506  return _IMP_rmf.HierarchyLoadLink_get_name()
1507 
1508  get_name = staticmethod(get_name)
1509 
1510  def get_version_info(self):
1511  """get_version_info(HierarchyLoadLink self) -> VersionInfo"""
1512  return _IMP_rmf.HierarchyLoadLink_get_version_info(self)
1513 
1514 
1515  def __str__(self):
1516  """__str__(HierarchyLoadLink self) -> std::string"""
1517  return _IMP_rmf.HierarchyLoadLink___str__(self)
1518 
1519 
1520  def __repr__(self):
1521  """__repr__(HierarchyLoadLink self) -> std::string"""
1522  return _IMP_rmf.HierarchyLoadLink___repr__(self)
1523 
1524 
1525  @staticmethod
1526  def get_from(o):
1527  return _object_cast_to_HierarchyLoadLink(o)
1528 
1529 HierarchyLoadLink_swigregister = _IMP_rmf.HierarchyLoadLink_swigregister
1530 HierarchyLoadLink_swigregister(HierarchyLoadLink)
1531 
1532 def HierarchyLoadLink_get_name():
1533  """HierarchyLoadLink_get_name() -> char const *"""
1534  return _IMP_rmf.HierarchyLoadLink_get_name()
1535 
1536 class HierarchySaveLink(_ParticleSaveLink):
1537  """Proxy of C++ IMP::rmf::HierarchySaveLink class"""
1538  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1539 
1540  def __init__(self, fh):
1541  """__init__(IMP::rmf::HierarchySaveLink self, FileHandle fh) -> HierarchySaveLink"""
1542  this = _IMP_rmf.new_HierarchySaveLink(fh)
1543  try:
1544  self.this.append(this)
1545  except:
1546  self.this = this
1547 
1548  def get_name():
1549  """get_name() -> char const *"""
1550  return _IMP_rmf.HierarchySaveLink_get_name()
1551 
1552  get_name = staticmethod(get_name)
1553 
1554  def get_version_info(self):
1555  """get_version_info(HierarchySaveLink self) -> VersionInfo"""
1556  return _IMP_rmf.HierarchySaveLink_get_version_info(self)
1557 
1558 
1559  def __str__(self):
1560  """__str__(HierarchySaveLink self) -> std::string"""
1561  return _IMP_rmf.HierarchySaveLink___str__(self)
1562 
1563 
1564  def __repr__(self):
1565  """__repr__(HierarchySaveLink self) -> std::string"""
1566  return _IMP_rmf.HierarchySaveLink___repr__(self)
1567 
1568 
1569  @staticmethod
1570  def get_from(o):
1571  return _object_cast_to_HierarchySaveLink(o)
1572 
1573 HierarchySaveLink_swigregister = _IMP_rmf.HierarchySaveLink_swigregister
1574 HierarchySaveLink_swigregister(HierarchySaveLink)
1575 
1576 def HierarchySaveLink_get_name():
1577  """HierarchySaveLink_get_name() -> char const *"""
1578  return _IMP_rmf.HierarchySaveLink_get_name()
1579 
1580 
1581 suffixes = [".rmf", ".rmfz"]
1582 
1583 
1584 def get_module_version():
1585  """get_module_version() -> std::string const"""
1586  return _IMP_rmf.get_module_version()
1587 
1588 def get_example_path(fname):
1589  """get_example_path(std::string fname) -> std::string"""
1590  return _IMP_rmf.get_example_path(fname)
1591 
1592 def get_data_path(fname):
1593  """get_data_path(std::string fname) -> std::string"""
1594  return _IMP_rmf.get_data_path(fname)
1595 
1596 from . import _version_check
1597 _version_check.check_version(get_module_version())
1598 __version__ = get_module_version()
1599 
1600 
1601 
IMP::rmf::link_particles
void link_particles(RMF::FileConstHandle fh, const ParticlesTemp &hs)
IMP::rmf::create_geometries
display::Geometries create_geometries(RMF::FileConstHandle parent)
Create geometry objects for the geometry nodes found in the file.
IMP::rmf::create_particles
ParticlesTemp create_particles(RMF::FileConstHandle fh, Model *m)
IMP::rmf::create_hierarchies
atom::Hierarchies create_hierarchies(RMF::FileConstHandle fh, Model *m)
IMP::rmf::save_frame
RMF::FrameID save_frame(RMF::FileHandle file, std::string name="")
Save the current state of the linked objects as a new RMF frame.
IMP::rmf::add_particles
void add_particles(RMF::FileHandle fh, const ParticlesTemp &hs)
IMP::container
Various classes to hold sets of particles.
IMP::rmf::add_restraints_as_bonds
void add_restraints_as_bonds(RMF::FileHandle fh, const Restraints &rs)
Add a list of restraints to the file as (static) bonds.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
IMP::rmf::link_restraints
void link_restraints(RMF::FileConstHandle fh, const Restraints &hs)
IMP::rmf::add_particle
void add_particle(RMF::FileHandle fh, Particle *hs)
IMP::rmf::add_hierarchies
void add_hierarchies(RMF::FileHandle fh, const atom::Hierarchies &hs)
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::statistics
Code to compute statistical measures.
IMP::pmi1::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::rmf::add_restraint
void add_restraint(RMF::FileHandle fh, Restraint *hs)
IMP::rmf::add_hierarchy
void add_hierarchy(RMF::FileHandle fh, atom::Hierarchy hs)
IMP::pmi1::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::rmf::add_restraints
void add_restraints(RMF::FileHandle fh, const Restraints &hs)
IMP::rmf::link_geometries
void link_geometries(RMF::FileConstHandle parent, const display::GeometriesTemp &r)
Link the passed geometry objects to corresponding ones in the file.
IMP::VersionInfo
Version and module information for Objects.
Definition: VersionInfo.h:29
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::rmf::load_frame
void load_frame(RMF::FileConstHandle file, RMF::FrameID frame)
Load the given RMF frame into the state of the linked objects.
IMP::Decorator::get_particle
Particle * get_particle() const
Returns the particle decorated by this decorator.
Definition: Decorator.h:173
IMP::rmf::set_maximum_number_of_terms
void set_maximum_number_of_terms(RMF::FileHandle fh, unsigned int num)
Limit the number of restraint terms.
IMP::pmi1::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::rmf::create_restraints
Restraints create_restraints(RMF::FileConstHandle fh, Model *m)
IMP::OptimizerState
Shared optimizer state that is invoked upon commitment of new coordinates.
Definition: OptimizerState.h:43
IMP::rmf::link_hierarchies
void link_hierarchies(RMF::FileConstHandle fh, const atom::Hierarchies &hs)
IMP::rmf::add_geometry
void add_geometry(RMF::FileHandle file, display::Geometry *r)
Add a single geometry to the file.
IMP::rmf::add_static_geometries
void add_static_geometries(RMF::FileHandle parent, const display::GeometriesTemp &r)
Add geometries, assuming they do not move between frames.
IMP::rmf::add_geometries
void add_geometries(RMF::FileHandle file, const display::GeometriesTemp &r)
Add geometries to the file.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...