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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
version 2.18.0
multifit/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_multifit', [dirname(__file__)])
25  except ImportError:
26  import _IMP_multifit
27  return _IMP_multifit
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_multifit', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_multifit = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_multifit
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_MULTIFIT_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_MULTIFIT_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_multifit.delete_IMP_MULTIFIT_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
127  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
133  incr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
134  """
135  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_MULTIFIT_SwigPyIterator self, size_t n=1) -> IMP_MULTIFIT_SwigPyIterator
141  decr(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator
142  """
143  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
153  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_MULTIFIT_SwigPyIterator self) -> IMP_MULTIFIT_SwigPyIterator"""
158  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
163  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
168  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_MULTIFIT_SwigPyIterator self) -> PyObject *"""
173  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
178  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
183  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> bool"""
188  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
193  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
198  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator"""
203  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_MULTIFIT_SwigPyIterator self, ptrdiff_t n) -> IMP_MULTIFIT_SwigPyIterator
209  __sub__(IMP_MULTIFIT_SwigPyIterator self, IMP_MULTIFIT_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_multifit.IMP_MULTIFIT_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_MULTIFIT_SwigPyIterator_swigregister = _IMP_multifit.IMP_MULTIFIT_SwigPyIterator_swigregister
216 IMP_MULTIFIT_SwigPyIterator_swigregister(IMP_MULTIFIT_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_multifit.IMP_DEBUG_swigconstant(_IMP_multifit)
226 IMP_DEBUG = _IMP_multifit.IMP_DEBUG
227 
228 _IMP_multifit.IMP_RELEASE_swigconstant(_IMP_multifit)
229 IMP_RELEASE = _IMP_multifit.IMP_RELEASE
230 
231 _IMP_multifit.IMP_SILENT_swigconstant(_IMP_multifit)
232 IMP_SILENT = _IMP_multifit.IMP_SILENT
233 
234 _IMP_multifit.IMP_PROGRESS_swigconstant(_IMP_multifit)
235 IMP_PROGRESS = _IMP_multifit.IMP_PROGRESS
236 
237 _IMP_multifit.IMP_TERSE_swigconstant(_IMP_multifit)
238 IMP_TERSE = _IMP_multifit.IMP_TERSE
239 
240 _IMP_multifit.IMP_VERBOSE_swigconstant(_IMP_multifit)
241 IMP_VERBOSE = _IMP_multifit.IMP_VERBOSE
242 
243 _IMP_multifit.IMP_MEMORY_swigconstant(_IMP_multifit)
244 IMP_MEMORY = _IMP_multifit.IMP_MEMORY
245 
246 _IMP_multifit.IMP_NONE_swigconstant(_IMP_multifit)
247 IMP_NONE = _IMP_multifit.IMP_NONE
248 
249 _IMP_multifit.IMP_USAGE_swigconstant(_IMP_multifit)
250 IMP_USAGE = _IMP_multifit.IMP_USAGE
251 
252 _IMP_multifit.IMP_INTERNAL_swigconstant(_IMP_multifit)
253 IMP_INTERNAL = _IMP_multifit.IMP_INTERNAL
254 
255 _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_multifit)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_multifit.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_multifit)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_multifit.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_multifit.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_multifit)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_multifit.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_multifit.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_multifit)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_multifit.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_multifit.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_multifit)
271 IMP_KERNEL_HAS_NUMPY = _IMP_multifit.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_multifit)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_multifit.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_multifit)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_multifit)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_multifit.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_multifit.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_multifit.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_multifit._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_multifit._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_multifit.IMP_HAS_NOEXCEPT_swigconstant(_IMP_multifit)
328 IMP_HAS_NOEXCEPT = _IMP_multifit.IMP_HAS_NOEXCEPT
329 
330 _IMP_multifit.IMP_C_OPEN_BINARY_swigconstant(_IMP_multifit)
331 IMP_C_OPEN_BINARY = _IMP_multifit.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_multifit.IMP_CGAL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
344 IMP_CGAL_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_CGAL_HAS_BOOST_SERIALIZATION
345 
346 _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
347 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CGAL_HAS_BOOST_SYSTEM
348 
349 _IMP_multifit.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_multifit)
350 IMP_CGAL_HAS_NUMPY = _IMP_multifit.IMP_CGAL_HAS_NUMPY
351 
352 _IMP_multifit.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_multifit)
353 IMPCGAL_SHOW_WARNINGS = _IMP_multifit.IMPCGAL_SHOW_WARNINGS
354 import IMP.cgal
355 
356 _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
357 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_IMP_CGAL
358 
359 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
360 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
361 
362 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
363 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
364 
365 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
366 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_RANDOM
367 
368 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
369 IMP_ALGEBRA_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION
370 
371 _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
372 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ALGEBRA_HAS_BOOST_SYSTEM
373 
374 _IMP_multifit.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_multifit)
375 IMP_ALGEBRA_HAS_CGAL = _IMP_multifit.IMP_ALGEBRA_HAS_CGAL
376 
377 _IMP_multifit.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_multifit)
378 IMP_ALGEBRA_HAS_NUMPY = _IMP_multifit.IMP_ALGEBRA_HAS_NUMPY
379 
380 _IMP_multifit.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_multifit)
381 IMP_ALGEBRA_HAS_ANN = _IMP_multifit.IMP_ALGEBRA_HAS_ANN
382 
383 _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_multifit)
384 IMPALGEBRA_SHOW_WARNINGS = _IMP_multifit.IMPALGEBRA_SHOW_WARNINGS
385 import IMP.algebra
386 
387 _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
388 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_IMP_CGAL
389 
390 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
391 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
392 
393 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
394 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
395 
396 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
397 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_RANDOM
398 
399 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
400 IMP_DISPLAY_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SERIALIZATION
401 
402 _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
403 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DISPLAY_HAS_BOOST_SYSTEM
404 
405 _IMP_multifit.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_multifit)
406 IMP_DISPLAY_HAS_CGAL = _IMP_multifit.IMP_DISPLAY_HAS_CGAL
407 
408 _IMP_multifit.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_multifit)
409 IMP_DISPLAY_HAS_NUMPY = _IMP_multifit.IMP_DISPLAY_HAS_NUMPY
410 
411 _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_multifit)
412 IMPDISPLAY_SHOW_WARNINGS = _IMP_multifit.IMPDISPLAY_SHOW_WARNINGS
413 import IMP.display
414 
415 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
416 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
417 
418 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
420 
421 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
422 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
425 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
426 
427 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
428 IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION
429 
430 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
431 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
432 
433 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_multifit)
434 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_CGAL
435 
436 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_multifit)
437 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_HDF5
438 
439 _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_multifit)
440 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_multifit.IMP_SCORE_FUNCTOR_HAS_NUMPY
441 
442 _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_multifit)
443 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_multifit.IMPSCOREFUNCTOR_SHOW_WARNINGS
444 import IMP.score_functor
445 
446 _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
447 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_IMP_CGAL
448 
449 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
450 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
451 
452 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
453 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
454 
455 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
456 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_RANDOM
457 
458 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
459 IMP_STATISTICS_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SERIALIZATION
460 
461 _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
462 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_STATISTICS_HAS_BOOST_SYSTEM
463 
464 _IMP_multifit.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_multifit)
465 IMP_STATISTICS_HAS_CGAL = _IMP_multifit.IMP_STATISTICS_HAS_CGAL
466 
467 _IMP_multifit.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_multifit)
468 IMP_STATISTICS_HAS_NUMPY = _IMP_multifit.IMP_STATISTICS_HAS_NUMPY
469 
470 _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
471 IMPSTATISTICS_SHOW_WARNINGS = _IMP_multifit.IMPSTATISTICS_SHOW_WARNINGS
472 import IMP.statistics
473 
474 _IMP_multifit.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
475 IMP_CORE_HAS_IMP_CGAL = _IMP_multifit.IMP_CORE_HAS_IMP_CGAL
476 
477 _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
478 IMP_CORE_HAS_IMP_KERNEL = _IMP_multifit.IMP_CORE_HAS_IMP_KERNEL
479 
480 _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
481 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_FILESYSTEM
482 
483 _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
484 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
485 
486 _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
487 IMP_CORE_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CORE_HAS_BOOST_RANDOM
488 
489 _IMP_multifit.IMP_CORE_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
490 IMP_CORE_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_CORE_HAS_BOOST_SERIALIZATION
491 
492 _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
493 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CORE_HAS_BOOST_SYSTEM
494 
495 _IMP_multifit.IMP_CORE_HAS_CGAL_swigconstant(_IMP_multifit)
496 IMP_CORE_HAS_CGAL = _IMP_multifit.IMP_CORE_HAS_CGAL
497 
498 _IMP_multifit.IMP_CORE_HAS_HDF5_swigconstant(_IMP_multifit)
499 IMP_CORE_HAS_HDF5 = _IMP_multifit.IMP_CORE_HAS_HDF5
500 
501 _IMP_multifit.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_multifit)
502 IMP_CORE_HAS_NUMPY = _IMP_multifit.IMP_CORE_HAS_NUMPY
503 
504 _IMP_multifit.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_multifit)
505 IMPCORE_SHOW_WARNINGS = _IMP_multifit.IMPCORE_SHOW_WARNINGS
506 import IMP.core
507 
508 _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_multifit)
509 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_multifit.IMP_CONTAINER_HAS_IMP_ALGEBRA
510 
511 _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
512 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_CGAL
513 
514 _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
515 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_multifit.IMP_CONTAINER_HAS_IMP_DISPLAY
516 
517 _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
518 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_multifit.IMP_CONTAINER_HAS_IMP_KERNEL
519 
520 _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
521 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
522 
523 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
524 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
525 
526 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
527 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
528 
529 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
530 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_RANDOM
531 
532 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
533 IMP_CONTAINER_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SERIALIZATION
534 
535 _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
536 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_CONTAINER_HAS_BOOST_SYSTEM
537 
538 _IMP_multifit.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_multifit)
539 IMP_CONTAINER_HAS_CGAL = _IMP_multifit.IMP_CONTAINER_HAS_CGAL
540 
541 _IMP_multifit.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_multifit)
542 IMP_CONTAINER_HAS_HDF5 = _IMP_multifit.IMP_CONTAINER_HAS_HDF5
543 
544 _IMP_multifit.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_multifit)
545 IMP_CONTAINER_HAS_NUMPY = _IMP_multifit.IMP_CONTAINER_HAS_NUMPY
546 
547 _IMP_multifit.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
548 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_multifit.IMP_CONTAINER_HAS_PYTHON_IHM
549 
550 _IMP_multifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_multifit)
551 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_multifit.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
552 
553 _IMP_multifit.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_multifit)
554 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_multifit.IMP_CONTAINER_HAS_ROBIN_MAP
555 
556 _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_multifit)
557 IMPCONTAINER_SHOW_WARNINGS = _IMP_multifit.IMPCONTAINER_SHOW_WARNINGS
558 import IMP.container
559 
560 _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
561 IMP_ATOM_HAS_IMP_CGAL = _IMP_multifit.IMP_ATOM_HAS_IMP_CGAL
562 
563 _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
564 IMP_ATOM_HAS_IMP_KERNEL = _IMP_multifit.IMP_ATOM_HAS_IMP_KERNEL
565 
566 _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
567 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
568 
569 _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
570 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
571 
572 _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
573 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ATOM_HAS_BOOST_RANDOM
574 
575 _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
576 IMP_ATOM_HAS_BOOST_REGEX = _IMP_multifit.IMP_ATOM_HAS_BOOST_REGEX
577 
578 _IMP_multifit.IMP_ATOM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
579 IMP_ATOM_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_ATOM_HAS_BOOST_SERIALIZATION
580 
581 _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
582 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ATOM_HAS_BOOST_SYSTEM
583 
584 _IMP_multifit.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_multifit)
585 IMP_ATOM_HAS_CGAL = _IMP_multifit.IMP_ATOM_HAS_CGAL
586 
587 _IMP_multifit.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_multifit)
588 IMP_ATOM_HAS_HDF5 = _IMP_multifit.IMP_ATOM_HAS_HDF5
589 
590 _IMP_multifit.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_multifit)
591 IMP_ATOM_HAS_NUMPY = _IMP_multifit.IMP_ATOM_HAS_NUMPY
592 
593 _IMP_multifit.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
594 IMP_ATOM_HAS_PYTHON_IHM = _IMP_multifit.IMP_ATOM_HAS_PYTHON_IHM
595 
596 _IMP_multifit.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
597 IMPATOM_SHOW_WARNINGS = _IMP_multifit.IMPATOM_SHOW_WARNINGS
598 
599 _IMP_multifit.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_multifit)
600 IMP_ATOM_TYPE_INDEX = _IMP_multifit.IMP_ATOM_TYPE_INDEX
601 
602 _IMP_multifit.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_multifit)
603 IMP_RESIDUE_TYPE_INDEX = _IMP_multifit.IMP_RESIDUE_TYPE_INDEX
604 
605 _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_multifit)
606 IMP_HIERARCHY_TYPE_INDEX = _IMP_multifit.IMP_HIERARCHY_TYPE_INDEX
607 
608 _IMP_multifit.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_multifit)
609 IMP_CHAIN_TYPE_INDEX = _IMP_multifit.IMP_CHAIN_TYPE_INDEX
610 import IMP.atom
611 
612 _IMP_multifit.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
613 IMP_EM_HAS_IMP_CGAL = _IMP_multifit.IMP_EM_HAS_IMP_CGAL
614 
615 _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
616 IMP_EM_HAS_IMP_CONTAINER = _IMP_multifit.IMP_EM_HAS_IMP_CONTAINER
617 
618 _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
619 IMP_EM_HAS_IMP_DISPLAY = _IMP_multifit.IMP_EM_HAS_IMP_DISPLAY
620 
621 _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
622 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_EM_HAS_IMP_SCORE_FUNCTOR
623 
624 _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
625 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_FILESYSTEM
626 
627 _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
628 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
629 
630 _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
631 IMP_EM_HAS_BOOST_RANDOM = _IMP_multifit.IMP_EM_HAS_BOOST_RANDOM
632 
633 _IMP_multifit.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
634 IMP_EM_HAS_BOOST_REGEX = _IMP_multifit.IMP_EM_HAS_BOOST_REGEX
635 
636 _IMP_multifit.IMP_EM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
637 IMP_EM_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_EM_HAS_BOOST_SERIALIZATION
638 
639 _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
640 IMP_EM_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_EM_HAS_BOOST_SYSTEM
641 
642 _IMP_multifit.IMP_EM_HAS_CGAL_swigconstant(_IMP_multifit)
643 IMP_EM_HAS_CGAL = _IMP_multifit.IMP_EM_HAS_CGAL
644 
645 _IMP_multifit.IMP_EM_HAS_HDF5_swigconstant(_IMP_multifit)
646 IMP_EM_HAS_HDF5 = _IMP_multifit.IMP_EM_HAS_HDF5
647 
648 _IMP_multifit.IMP_EM_HAS_NUMPY_swigconstant(_IMP_multifit)
649 IMP_EM_HAS_NUMPY = _IMP_multifit.IMP_EM_HAS_NUMPY
650 
651 _IMP_multifit.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
652 IMP_EM_HAS_PYTHON_IHM = _IMP_multifit.IMP_EM_HAS_PYTHON_IHM
653 
654 _IMP_multifit.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_multifit)
655 IMPEM_SHOW_WARNINGS = _IMP_multifit.IMPEM_SHOW_WARNINGS
656 import IMP.em
657 
658 _IMP_multifit.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
659 IMP_SAXS_HAS_IMP_CGAL = _IMP_multifit.IMP_SAXS_HAS_IMP_CGAL
660 
661 _IMP_multifit.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
662 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_multifit.IMP_SAXS_HAS_IMP_CONTAINER
663 
664 _IMP_multifit.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
665 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_multifit.IMP_SAXS_HAS_IMP_DISPLAY
666 
667 _IMP_multifit.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
668 IMP_SAXS_HAS_IMP_KERNEL = _IMP_multifit.IMP_SAXS_HAS_IMP_KERNEL
669 
670 _IMP_multifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
671 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
672 
673 _IMP_multifit.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
674 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_SAXS_HAS_BOOST_FILESYSTEM
675 
676 _IMP_multifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
677 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
678 
679 _IMP_multifit.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
680 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_multifit.IMP_SAXS_HAS_BOOST_RANDOM
681 
682 _IMP_multifit.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
683 IMP_SAXS_HAS_BOOST_REGEX = _IMP_multifit.IMP_SAXS_HAS_BOOST_REGEX
684 
685 _IMP_multifit.IMP_SAXS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
686 IMP_SAXS_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_SAXS_HAS_BOOST_SERIALIZATION
687 
688 _IMP_multifit.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
689 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_SAXS_HAS_BOOST_SYSTEM
690 
691 _IMP_multifit.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_multifit)
692 IMP_SAXS_HAS_CGAL = _IMP_multifit.IMP_SAXS_HAS_CGAL
693 
694 _IMP_multifit.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_multifit)
695 IMP_SAXS_HAS_HDF5 = _IMP_multifit.IMP_SAXS_HAS_HDF5
696 
697 _IMP_multifit.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_multifit)
698 IMP_SAXS_HAS_NUMPY = _IMP_multifit.IMP_SAXS_HAS_NUMPY
699 
700 _IMP_multifit.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
701 IMP_SAXS_HAS_PYTHON_IHM = _IMP_multifit.IMP_SAXS_HAS_PYTHON_IHM
702 
703 _IMP_multifit.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_multifit)
704 IMPSAXS_SHOW_WARNINGS = _IMP_multifit.IMPSAXS_SHOW_WARNINGS
705 import IMP.saxs
706 
707 _IMP_multifit.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
708 IMP_ISD_HAS_IMP_CGAL = _IMP_multifit.IMP_ISD_HAS_IMP_CGAL
709 
710 _IMP_multifit.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
711 IMP_ISD_HAS_IMP_DISPLAY = _IMP_multifit.IMP_ISD_HAS_IMP_DISPLAY
712 
713 _IMP_multifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
714 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
715 
716 _IMP_multifit.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
717 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_ISD_HAS_BOOST_FILESYSTEM
718 
719 _IMP_multifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
720 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
721 
722 _IMP_multifit.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
723 IMP_ISD_HAS_BOOST_RANDOM = _IMP_multifit.IMP_ISD_HAS_BOOST_RANDOM
724 
725 _IMP_multifit.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
726 IMP_ISD_HAS_BOOST_REGEX = _IMP_multifit.IMP_ISD_HAS_BOOST_REGEX
727 
728 _IMP_multifit.IMP_ISD_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
729 IMP_ISD_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_ISD_HAS_BOOST_SERIALIZATION
730 
731 _IMP_multifit.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
732 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_ISD_HAS_BOOST_SYSTEM
733 
734 _IMP_multifit.IMP_ISD_HAS_CGAL_swigconstant(_IMP_multifit)
735 IMP_ISD_HAS_CGAL = _IMP_multifit.IMP_ISD_HAS_CGAL
736 
737 _IMP_multifit.IMP_ISD_HAS_HDF5_swigconstant(_IMP_multifit)
738 IMP_ISD_HAS_HDF5 = _IMP_multifit.IMP_ISD_HAS_HDF5
739 
740 _IMP_multifit.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_multifit)
741 IMP_ISD_HAS_NUMPY = _IMP_multifit.IMP_ISD_HAS_NUMPY
742 
743 _IMP_multifit.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
744 IMP_ISD_HAS_PYTHON_IHM = _IMP_multifit.IMP_ISD_HAS_PYTHON_IHM
745 
746 _IMP_multifit.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_multifit)
747 IMPISD_SHOW_WARNINGS = _IMP_multifit.IMPISD_SHOW_WARNINGS
748 import IMP.isd
749 
750 _IMP_multifit.IMP_RMF_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
751 IMP_RMF_HAS_IMP_CGAL = _IMP_multifit.IMP_RMF_HAS_IMP_CGAL
752 
753 _IMP_multifit.IMP_RMF_HAS_IMP_EM_swigconstant(_IMP_multifit)
754 IMP_RMF_HAS_IMP_EM = _IMP_multifit.IMP_RMF_HAS_IMP_EM
755 
756 _IMP_multifit.IMP_RMF_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
757 IMP_RMF_HAS_IMP_SAXS = _IMP_multifit.IMP_RMF_HAS_IMP_SAXS
758 
759 _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
760 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
761 
762 _IMP_multifit.IMP_RMF_HAS_IMP_STATISTICS_swigconstant(_IMP_multifit)
763 IMP_RMF_HAS_IMP_STATISTICS = _IMP_multifit.IMP_RMF_HAS_IMP_STATISTICS
764 
765 _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
766 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_FILESYSTEM
767 
768 _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
769 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
770 
771 _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
772 IMP_RMF_HAS_BOOST_RANDOM = _IMP_multifit.IMP_RMF_HAS_BOOST_RANDOM
773 
774 _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
775 IMP_RMF_HAS_BOOST_REGEX = _IMP_multifit.IMP_RMF_HAS_BOOST_REGEX
776 
777 _IMP_multifit.IMP_RMF_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
778 IMP_RMF_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_RMF_HAS_BOOST_SERIALIZATION
779 
780 _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
781 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_RMF_HAS_BOOST_SYSTEM
782 
783 _IMP_multifit.IMP_RMF_HAS_CGAL_swigconstant(_IMP_multifit)
784 IMP_RMF_HAS_CGAL = _IMP_multifit.IMP_RMF_HAS_CGAL
785 
786 _IMP_multifit.IMP_RMF_HAS_HDF5_swigconstant(_IMP_multifit)
787 IMP_RMF_HAS_HDF5 = _IMP_multifit.IMP_RMF_HAS_HDF5
788 
789 _IMP_multifit.IMP_RMF_HAS_NUMPY_swigconstant(_IMP_multifit)
790 IMP_RMF_HAS_NUMPY = _IMP_multifit.IMP_RMF_HAS_NUMPY
791 
792 _IMP_multifit.IMP_RMF_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
793 IMP_RMF_HAS_PYTHON_IHM = _IMP_multifit.IMP_RMF_HAS_PYTHON_IHM
794 
795 _IMP_multifit.IMPRMF_SHOW_WARNINGS_swigconstant(_IMP_multifit)
796 IMPRMF_SHOW_WARNINGS = _IMP_multifit.IMPRMF_SHOW_WARNINGS
797 import IMP.rmf
798 import RMF
799 
800 _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM_swigconstant(_IMP_multifit)
801 IMP_DOMINO_HAS_IMP_ATOM = _IMP_multifit.IMP_DOMINO_HAS_IMP_ATOM
802 
803 _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
804 IMP_DOMINO_HAS_IMP_CGAL = _IMP_multifit.IMP_DOMINO_HAS_IMP_CGAL
805 
806 _IMP_multifit.IMP_DOMINO_HAS_IMP_EM_swigconstant(_IMP_multifit)
807 IMP_DOMINO_HAS_IMP_EM = _IMP_multifit.IMP_DOMINO_HAS_IMP_EM
808 
809 _IMP_multifit.IMP_DOMINO_HAS_IMP_ISD_swigconstant(_IMP_multifit)
810 IMP_DOMINO_HAS_IMP_ISD = _IMP_multifit.IMP_DOMINO_HAS_IMP_ISD
811 
812 _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
813 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_multifit.IMP_DOMINO_HAS_IMP_KERNEL
814 
815 _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF_swigconstant(_IMP_multifit)
816 IMP_DOMINO_HAS_IMP_RMF = _IMP_multifit.IMP_DOMINO_HAS_IMP_RMF
817 
818 _IMP_multifit.IMP_DOMINO_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
819 IMP_DOMINO_HAS_IMP_SAXS = _IMP_multifit.IMP_DOMINO_HAS_IMP_SAXS
820 
821 _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
822 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
823 
824 _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_multifit)
825 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_FILESYSTEM
826 
827 _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_multifit)
828 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_multifit.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
829 
830 _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
831 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_RANDOM
832 
833 _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
834 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_multifit.IMP_DOMINO_HAS_BOOST_REGEX
835 
836 _IMP_multifit.IMP_DOMINO_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
837 IMP_DOMINO_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_DOMINO_HAS_BOOST_SERIALIZATION
838 
839 _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
840 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_DOMINO_HAS_BOOST_SYSTEM
841 
842 _IMP_multifit.IMP_DOMINO_HAS_CGAL_swigconstant(_IMP_multifit)
843 IMP_DOMINO_HAS_CGAL = _IMP_multifit.IMP_DOMINO_HAS_CGAL
844 
845 _IMP_multifit.IMP_DOMINO_HAS_HDF5_swigconstant(_IMP_multifit)
846 IMP_DOMINO_HAS_HDF5 = _IMP_multifit.IMP_DOMINO_HAS_HDF5
847 
848 _IMP_multifit.IMP_DOMINO_HAS_NUMPY_swigconstant(_IMP_multifit)
849 IMP_DOMINO_HAS_NUMPY = _IMP_multifit.IMP_DOMINO_HAS_NUMPY
850 
851 _IMP_multifit.IMP_DOMINO_HAS_RMF_swigconstant(_IMP_multifit)
852 IMP_DOMINO_HAS_RMF = _IMP_multifit.IMP_DOMINO_HAS_RMF
853 
854 _IMP_multifit.IMP_DOMINO_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
855 IMP_DOMINO_HAS_PYTHON_IHM = _IMP_multifit.IMP_DOMINO_HAS_PYTHON_IHM
856 
857 _IMP_multifit.IMPDOMINO_SHOW_WARNINGS_swigconstant(_IMP_multifit)
858 IMPDOMINO_SHOW_WARNINGS = _IMP_multifit.IMPDOMINO_SHOW_WARNINGS
859 import RMF_HDF5
860 import IMP.domino
861 
862 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL_swigconstant(_IMP_multifit)
863 IMP_MULTIFIT_HAS_IMP_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CGAL
864 
865 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER_swigconstant(_IMP_multifit)
866 IMP_MULTIFIT_HAS_IMP_CONTAINER = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_CONTAINER
867 
868 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY_swigconstant(_IMP_multifit)
869 IMP_MULTIFIT_HAS_IMP_DISPLAY = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_DISPLAY
870 
871 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_ISD_swigconstant(_IMP_multifit)
872 IMP_MULTIFIT_HAS_IMP_ISD = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_ISD
873 
874 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL_swigconstant(_IMP_multifit)
875 IMP_MULTIFIT_HAS_IMP_KERNEL = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_KERNEL
876 
877 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF_swigconstant(_IMP_multifit)
878 IMP_MULTIFIT_HAS_IMP_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_RMF
879 
880 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SAXS_swigconstant(_IMP_multifit)
881 IMP_MULTIFIT_HAS_IMP_SAXS = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SAXS
882 
883 _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_multifit)
884 IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR = _IMP_multifit.IMP_MULTIFIT_HAS_IMP_SCORE_FUNCTOR
885 
886 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH_swigconstant(_IMP_multifit)
887 IMP_MULTIFIT_HAS_BOOST_GRAPH = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_GRAPH
888 
889 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM_swigconstant(_IMP_multifit)
890 IMP_MULTIFIT_HAS_BOOST_RANDOM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_RANDOM
891 
892 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX_swigconstant(_IMP_multifit)
893 IMP_MULTIFIT_HAS_BOOST_REGEX = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_REGEX
894 
895 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_multifit)
896 IMP_MULTIFIT_HAS_BOOST_SERIALIZATION = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SERIALIZATION
897 
898 _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM_swigconstant(_IMP_multifit)
899 IMP_MULTIFIT_HAS_BOOST_SYSTEM = _IMP_multifit.IMP_MULTIFIT_HAS_BOOST_SYSTEM
900 
901 _IMP_multifit.IMP_MULTIFIT_HAS_CGAL_swigconstant(_IMP_multifit)
902 IMP_MULTIFIT_HAS_CGAL = _IMP_multifit.IMP_MULTIFIT_HAS_CGAL
903 
904 _IMP_multifit.IMP_MULTIFIT_HAS_HDF5_swigconstant(_IMP_multifit)
905 IMP_MULTIFIT_HAS_HDF5 = _IMP_multifit.IMP_MULTIFIT_HAS_HDF5
906 
907 _IMP_multifit.IMP_MULTIFIT_HAS_NUMPY_swigconstant(_IMP_multifit)
908 IMP_MULTIFIT_HAS_NUMPY = _IMP_multifit.IMP_MULTIFIT_HAS_NUMPY
909 
910 _IMP_multifit.IMP_MULTIFIT_HAS_RMF_swigconstant(_IMP_multifit)
911 IMP_MULTIFIT_HAS_RMF = _IMP_multifit.IMP_MULTIFIT_HAS_RMF
912 
913 _IMP_multifit.IMP_MULTIFIT_HAS_PYTHON_IHM_swigconstant(_IMP_multifit)
914 IMP_MULTIFIT_HAS_PYTHON_IHM = _IMP_multifit.IMP_MULTIFIT_HAS_PYTHON_IHM
915 
916 _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS_swigconstant(_IMP_multifit)
917 IMPMULTIFIT_SHOW_WARNINGS = _IMP_multifit.IMPMULTIFIT_SHOW_WARNINGS
918 
919 _object_types.append("RadiusOfGyrationRestraint")
920 
921 
922 def _object_cast_to_RadiusOfGyrationRestraint(o):
923  """_object_cast_to_RadiusOfGyrationRestraint(Object o) -> RadiusOfGyrationRestraint"""
924  return _IMP_multifit._object_cast_to_RadiusOfGyrationRestraint(o)
925 
926 _object_types.append("ComponentHeader")
927 
928 
929 def _object_cast_to_ComponentHeader(o):
930  """_object_cast_to_ComponentHeader(Object o) -> ComponentHeader"""
931  return _IMP_multifit._object_cast_to_ComponentHeader(o)
932 
933 _object_types.append("AssemblyHeader")
934 
935 
936 def _object_cast_to_AssemblyHeader(o):
937  """_object_cast_to_AssemblyHeader(Object o) -> AssemblyHeader"""
938  return _IMP_multifit._object_cast_to_AssemblyHeader(o)
939 
940 _object_types.append("SettingsData")
941 
942 
943 def _object_cast_to_SettingsData(o):
944  """_object_cast_to_SettingsData(Object o) -> SettingsData"""
945  return _IMP_multifit._object_cast_to_SettingsData(o)
946 
947 _object_types.append("WeightedExcludedVolumeRestraint")
948 
949 
950 def _object_cast_to_WeightedExcludedVolumeRestraint(o):
951  """_object_cast_to_WeightedExcludedVolumeRestraint(Object o) -> WeightedExcludedVolumeRestraint"""
952  return _IMP_multifit._object_cast_to_WeightedExcludedVolumeRestraint(o)
953 
954 _object_types.append("ComplementarityRestraint")
955 
956 
957 def _object_cast_to_ComplementarityRestraint(o):
958  """_object_cast_to_ComplementarityRestraint(Object o) -> ComplementarityRestraint"""
959  return _IMP_multifit._object_cast_to_ComplementarityRestraint(o)
960 
961 ProteinRecordDataList=list
962 _plural_types.append("ProteinRecordDataList")
963 _value_types.append("ProteinRecordData")
964 
965 
966 FittingSolutionRecords=list
967 _plural_types.append("FittingSolutionRecords")
968 _value_types.append("FittingSolutionRecord")
969 
970 
971 AnchorsDataList=list
972 _plural_types.append("AnchorsDataList")
973 _value_types.append("AnchorsData")
974 
975 
976 DominoParamsList=list
977 _plural_types.append("DominoParamsList")
978 _value_types.append("DominoParams")
979 
980 
981 ComplementarityParamsList=list
982 _plural_types.append("ComplementarityParamsList")
983 _value_types.append("ComplementarityParams")
984 
985 
986 XlinkParamsList=list
987 _plural_types.append("XlinkParamsList")
988 _value_types.append("XlinkParams")
989 
990 
991 ConnectivityParamsList=list
992 _plural_types.append("ConnectivityParamsList")
993 _value_types.append("ConnectivityParams")
994 
995 
996 FragmentsParamsList=list
997 _plural_types.append("FragmentsParamsList")
998 _value_types.append("FragmentsParams")
999 
1000 
1001 RogParamsList=list
1002 _plural_types.append("RogParamsList")
1003 _value_types.append("RogParams")
1004 
1005 
1006 EVParamsList=list
1007 _plural_types.append("EVParamsList")
1008 _value_types.append("EVParams")
1009 
1010 
1011 FiltersParamsList=list
1012 _plural_types.append("FiltersParamsList")
1013 _value_types.append("FiltersParams")
1014 
1015 
1016 AlignmentParamsList=list
1017 _plural_types.append("AlignmentParamsList")
1018 _value_types.append("AlignmentParams")
1019 
1020 
1021 FittingParamsList=list
1022 _plural_types.append("FittingParamsList")
1023 _value_types.append("FittingParams")
1024 
1025 
1026 ProteinsAnchorsSamplingSpaces=list
1027 _plural_types.append("ProteinsAnchorsSamplingSpaces")
1028 _value_types.append("ProteinsAnchorsSamplingSpace")
1029 
1030 
1031 _object_types.append("ProteomicsData")
1032 
1033 
1034 def _object_cast_to_ProteomicsData(o):
1035  """_object_cast_to_ProteomicsData(Object o) -> ProteomicsData"""
1036  return _IMP_multifit._object_cast_to_ProteomicsData(o)
1037 
1038 _object_types.append("FFTFitting")
1039 
1040 
1041 def _object_cast_to_FFTFitting(o):
1042  """_object_cast_to_FFTFitting(Object o) -> FFTFitting"""
1043  return _IMP_multifit._object_cast_to_FFTFitting(o)
1044 
1045 _object_types.append("FFTFittingOutput")
1046 
1047 
1048 def _object_cast_to_FFTFittingOutput(o):
1049  """_object_cast_to_FFTFittingOutput(Object o) -> FFTFittingOutput"""
1050  return _IMP_multifit._object_cast_to_FFTFittingOutput(o)
1051 
1052 _object_types.append("ProbabilisticAnchorGraph")
1053 
1054 
1055 def _object_cast_to_ProbabilisticAnchorGraph(o):
1056  """_object_cast_to_ProbabilisticAnchorGraph(Object o) -> ProbabilisticAnchorGraph"""
1057  return _IMP_multifit._object_cast_to_ProbabilisticAnchorGraph(o)
1058 
1059 _object_types.append("Ensemble")
1060 
1061 
1062 def _object_cast_to_Ensemble(o):
1063  """_object_cast_to_Ensemble(Object o) -> Ensemble"""
1064  return _IMP_multifit._object_cast_to_Ensemble(o)
1065 
1066 _object_types.append("ProteomicsEMAlignmentAtomic")
1067 
1068 
1069 def _object_cast_to_ProteomicsEMAlignmentAtomic(o):
1070  """_object_cast_to_ProteomicsEMAlignmentAtomic(Object o) -> ProteomicsEMAlignmentAtomic"""
1071  return _IMP_multifit._object_cast_to_ProteomicsEMAlignmentAtomic(o)
1072 
1073 _object_types.append("RigidLeavesRefiner")
1074 
1075 
1076 def _object_cast_to_RigidLeavesRefiner(o):
1077  """_object_cast_to_RigidLeavesRefiner(Object o) -> RigidLeavesRefiner"""
1078  return _IMP_multifit._object_cast_to_RigidLeavesRefiner(o)
1079 
1080 def add_surface_index(*args):
1081  """
1082  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key, FloatKey weight_key)
1083  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key, FloatKey radius_key)
1084  add_surface_index(Hierarchy mhd, IMP::Float apix, FloatKey shell_key)
1085  add_surface_index(Hierarchy mhd, IMP::Float apix)
1086  """
1087  return _IMP_multifit.add_surface_index(*args)
1088 
1089 def create_weighted_excluded_volume_restraint(*args):
1090  """
1091  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2, FloatKey shell_key) -> Restraint
1092  create_weighted_excluded_volume_restraint(RigidBody rb1, RigidBody rb2) -> Restraint
1093  """
1094  return _IMP_multifit.create_weighted_excluded_volume_restraint(*args)
1095 class FittingSolutionRecord(object):
1096  """Proxy of C++ IMP::multifit::FittingSolutionRecord class"""
1097  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1098 
1099  def __init__(self):
1100  """__init__(IMP::multifit::FittingSolutionRecord self) -> FittingSolutionRecord"""
1101  this = _IMP_multifit.new_FittingSolutionRecord()
1102  try:
1103  self.this.append(this)
1104  except:
1105  self.this = this
1106 
1107  def get_index(self):
1108  """get_index(FittingSolutionRecord self) -> unsigned int"""
1109  return _IMP_multifit.FittingSolutionRecord_get_index(self)
1110 
1111 
1112  def set_index(self, new_ind):
1113  """set_index(FittingSolutionRecord self, unsigned int new_ind)"""
1114  return _IMP_multifit.FittingSolutionRecord_set_index(self, new_ind)
1115 
1116 
1117  def get_solution_filename(self):
1118  """get_solution_filename(FittingSolutionRecord self) -> std::string"""
1119  return _IMP_multifit.FittingSolutionRecord_get_solution_filename(self)
1120 
1121 
1122  def set_solution_filename(self, sol_fn):
1123  """set_solution_filename(FittingSolutionRecord self, std::string sol_fn)"""
1124  return _IMP_multifit.FittingSolutionRecord_set_solution_filename(self, sol_fn)
1125 
1126 
1127  def get_fit_transformation(self):
1128  """get_fit_transformation(FittingSolutionRecord self) -> Transformation3D"""
1129  return _IMP_multifit.FittingSolutionRecord_get_fit_transformation(self)
1130 
1131 
1132  def set_fit_transformation(self, t):
1133  """set_fit_transformation(FittingSolutionRecord self, Transformation3D t)"""
1134  return _IMP_multifit.FittingSolutionRecord_set_fit_transformation(self, t)
1135 
1136 
1137  def get_match_size(self):
1138  """get_match_size(FittingSolutionRecord self) -> unsigned int"""
1139  return _IMP_multifit.FittingSolutionRecord_get_match_size(self)
1140 
1141 
1142  def set_match_size(self, match_size):
1143  """set_match_size(FittingSolutionRecord self, unsigned int match_size)"""
1144  return _IMP_multifit.FittingSolutionRecord_set_match_size(self, match_size)
1145 
1146 
1147  def get_match_average_distance(self):
1148  """get_match_average_distance(FittingSolutionRecord self) -> IMP::Float"""
1149  return _IMP_multifit.FittingSolutionRecord_get_match_average_distance(self)
1150 
1151 
1152  def set_match_average_distance(self, match_avg_dist):
1153  """set_match_average_distance(FittingSolutionRecord self, IMP::Float match_avg_dist)"""
1154  return _IMP_multifit.FittingSolutionRecord_set_match_average_distance(self, match_avg_dist)
1155 
1156 
1157  def get_fitting_score(self):
1158  """get_fitting_score(FittingSolutionRecord self) -> IMP::Float"""
1159  return _IMP_multifit.FittingSolutionRecord_get_fitting_score(self)
1160 
1161 
1162  def set_fitting_score(self, fit_score):
1163  """set_fitting_score(FittingSolutionRecord self, IMP::Float fit_score)"""
1164  return _IMP_multifit.FittingSolutionRecord_set_fitting_score(self, fit_score)
1165 
1166 
1167  def get_rmsd_to_reference(self):
1168  """get_rmsd_to_reference(FittingSolutionRecord self) -> IMP::Float"""
1169  return _IMP_multifit.FittingSolutionRecord_get_rmsd_to_reference(self)
1170 
1171 
1172  def set_rmsd_to_reference(self, rmsd_to_ref):
1173  """set_rmsd_to_reference(FittingSolutionRecord self, IMP::Float rmsd_to_ref)"""
1174  return _IMP_multifit.FittingSolutionRecord_set_rmsd_to_reference(self, rmsd_to_ref)
1175 
1176 
1177  def get_dock_transformation(self):
1178  """get_dock_transformation(FittingSolutionRecord self) -> Transformation3D"""
1179  return _IMP_multifit.FittingSolutionRecord_get_dock_transformation(self)
1180 
1181 
1182  def set_dock_transformation(self, t):
1183  """set_dock_transformation(FittingSolutionRecord self, Transformation3D t)"""
1184  return _IMP_multifit.FittingSolutionRecord_set_dock_transformation(self, t)
1185 
1186 
1187  def get_envelope_penetration_score(self):
1188  """get_envelope_penetration_score(FittingSolutionRecord self) -> IMP::Float"""
1189  return _IMP_multifit.FittingSolutionRecord_get_envelope_penetration_score(self)
1190 
1191 
1192  def set_envelope_penetration_score(self, s):
1193  """set_envelope_penetration_score(FittingSolutionRecord self, IMP::Float s)"""
1194  return _IMP_multifit.FittingSolutionRecord_set_envelope_penetration_score(self, s)
1195 
1196 
1197  def show(self, *args):
1198  """
1199  show(FittingSolutionRecord self, _ostream out)
1200  show(FittingSolutionRecord self)
1201  """
1202  return _IMP_multifit.FittingSolutionRecord_show(self, *args)
1203 
1204 
1205  def get_record_header():
1206  """get_record_header() -> std::string"""
1207  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1208 
1209  get_record_header = staticmethod(get_record_header)
1210 
1211  def __str__(self):
1212  """__str__(FittingSolutionRecord self) -> std::string"""
1213  return _IMP_multifit.FittingSolutionRecord___str__(self)
1214 
1215 
1216  def __repr__(self):
1217  """__repr__(FittingSolutionRecord self) -> std::string"""
1218  return _IMP_multifit.FittingSolutionRecord___repr__(self)
1219 
1220 
1221  def _get_as_binary(self):
1222  """_get_as_binary(FittingSolutionRecord self) -> PyObject *"""
1223  return _IMP_multifit.FittingSolutionRecord__get_as_binary(self)
1224 
1225 
1226  def _set_from_binary(self, p):
1227  """_set_from_binary(FittingSolutionRecord self, PyObject * p)"""
1228  return _IMP_multifit.FittingSolutionRecord__set_from_binary(self, p)
1229 
1230 
1231  def __getstate__(self):
1232  p = self._get_as_binary()
1233  if len(self.__dict__) > 1:
1234  d = self.__dict__.copy()
1235  del d['this']
1236  p = (d, p)
1237  return p
1238 
1239  def __setstate__(self, p):
1240  if not hasattr(self, 'this'):
1241  self.__init__()
1242  if isinstance(p, tuple):
1243  d, p = p
1244  self.__dict__.update(d)
1245  return self._set_from_binary(p)
1246 
1247  __swig_destroy__ = _IMP_multifit.delete_FittingSolutionRecord
1248  __del__ = lambda self: None
1249 FittingSolutionRecord_swigregister = _IMP_multifit.FittingSolutionRecord_swigregister
1250 FittingSolutionRecord_swigregister(FittingSolutionRecord)
1251 
1252 def FittingSolutionRecord_get_record_header():
1253  """FittingSolutionRecord_get_record_header() -> std::string"""
1254  return _IMP_multifit.FittingSolutionRecord_get_record_header()
1255 
1256 
1257 def pca_based_rigid_fitting(*args):
1258  """
1259  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1260  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1261  pca_based_rigid_fitting(RigidBody rb, Refiner rb_refiner, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1262  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key, PrincipalComponentAnalysis3D dens_pca_input) -> FittingSolutions
1263  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold, FloatKey wei_key) -> FittingSolutions
1264  pca_based_rigid_fitting(IMP::ParticlesTemp ps, DensityMap em_map, IMP::Float threshold) -> FittingSolutions
1265  """
1266  return _IMP_multifit.pca_based_rigid_fitting(*args)
1267 
1268 def write_markers(pca, out):
1269  """write_markers(PrincipalComponentAnalysis3D pca, _ostream out)"""
1270  return _IMP_multifit.write_markers(pca, out)
1271 class ComponentHeader(IMP.Object):
1272  """Proxy of C++ IMP::multifit::ComponentHeader class"""
1273  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1274 
1275  def __init__(self):
1276  """__init__(IMP::multifit::ComponentHeader self) -> ComponentHeader"""
1277  this = _IMP_multifit.new_ComponentHeader()
1278  try:
1279  self.this.append(this)
1280  except:
1281  self.this = this
1282 
1283  def set_name(self, name):
1284  """set_name(ComponentHeader self, std::string const & name)"""
1285  return _IMP_multifit.ComponentHeader_set_name(self, name)
1286 
1287 
1288  def get_name(self):
1289  """get_name(ComponentHeader self) -> std::string"""
1290  return _IMP_multifit.ComponentHeader_get_name(self)
1291 
1292 
1293  def get_filename(self):
1294  """get_filename(ComponentHeader self) -> std::string"""
1295  return _IMP_multifit.ComponentHeader_get_filename(self)
1296 
1297 
1298  def set_filename(self, filename):
1299  """set_filename(ComponentHeader self, std::string const & filename)"""
1300  return _IMP_multifit.ComponentHeader_set_filename(self, filename)
1301 
1302 
1303  def get_surface_fn(self):
1304  """get_surface_fn(ComponentHeader self) -> std::string"""
1305  return _IMP_multifit.ComponentHeader_get_surface_fn(self)
1306 
1307 
1308  def set_surface_fn(self, fn):
1309  """set_surface_fn(ComponentHeader self, std::string const & fn)"""
1310  return _IMP_multifit.ComponentHeader_set_surface_fn(self, fn)
1311 
1312 
1313  def set_txt_ap_fn(self, pdb_ap_fn):
1314  """set_txt_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1315  return _IMP_multifit.ComponentHeader_set_txt_ap_fn(self, pdb_ap_fn)
1316 
1317 
1318  def get_txt_ap_fn(self):
1319  """get_txt_ap_fn(ComponentHeader self) -> std::string"""
1320  return _IMP_multifit.ComponentHeader_get_txt_ap_fn(self)
1321 
1322 
1323  def set_txt_fine_ap_fn(self, pdb_ap_fn):
1324  """set_txt_fine_ap_fn(ComponentHeader self, std::string const & pdb_ap_fn)"""
1325  return _IMP_multifit.ComponentHeader_set_txt_fine_ap_fn(self, pdb_ap_fn)
1326 
1327 
1328  def get_txt_fine_ap_fn(self):
1329  """get_txt_fine_ap_fn(ComponentHeader self) -> std::string"""
1330  return _IMP_multifit.ComponentHeader_get_txt_fine_ap_fn(self)
1331 
1332 
1333  def set_num_ap(self, num_ap):
1334  """set_num_ap(ComponentHeader self, int num_ap)"""
1335  return _IMP_multifit.ComponentHeader_set_num_ap(self, num_ap)
1336 
1337 
1338  def get_num_ap(self):
1339  """get_num_ap(ComponentHeader self) -> int"""
1340  return _IMP_multifit.ComponentHeader_get_num_ap(self)
1341 
1342 
1343  def set_num_fine_ap(self, num_ap):
1344  """set_num_fine_ap(ComponentHeader self, int num_ap)"""
1345  return _IMP_multifit.ComponentHeader_set_num_fine_ap(self, num_ap)
1346 
1347 
1348  def get_num_fine_ap(self):
1349  """get_num_fine_ap(ComponentHeader self) -> int"""
1350  return _IMP_multifit.ComponentHeader_get_num_fine_ap(self)
1351 
1352 
1353  def set_transformations_fn(self, transformations_fn):
1354  """set_transformations_fn(ComponentHeader self, std::string transformations_fn)"""
1355  return _IMP_multifit.ComponentHeader_set_transformations_fn(self, transformations_fn)
1356 
1357 
1358  def get_transformations_fn(self):
1359  """get_transformations_fn(ComponentHeader self) -> std::string"""
1360  return _IMP_multifit.ComponentHeader_get_transformations_fn(self)
1361 
1362 
1363  def set_reference_fn(self, ref_fn):
1364  """set_reference_fn(ComponentHeader self, std::string const & ref_fn)"""
1365  return _IMP_multifit.ComponentHeader_set_reference_fn(self, ref_fn)
1366 
1367 
1368  def get_reference_fn(self):
1369  """get_reference_fn(ComponentHeader self) -> std::string"""
1370  return _IMP_multifit.ComponentHeader_get_reference_fn(self)
1371 
1372 
1373  def get_version_info(self):
1374  """get_version_info(ComponentHeader self) -> VersionInfo"""
1375  return _IMP_multifit.ComponentHeader_get_version_info(self)
1376 
1377 
1378  def __str__(self):
1379  """__str__(ComponentHeader self) -> std::string"""
1380  return _IMP_multifit.ComponentHeader___str__(self)
1381 
1382 
1383  def __repr__(self):
1384  """__repr__(ComponentHeader self) -> std::string"""
1385  return _IMP_multifit.ComponentHeader___repr__(self)
1386 
1387 
1388  @staticmethod
1389  def get_from(o):
1390  return _object_cast_to_ComponentHeader(o)
1391 
1392 ComponentHeader_swigregister = _IMP_multifit.ComponentHeader_swigregister
1393 ComponentHeader_swigregister(ComponentHeader)
1394 
1395 class AssemblyHeader(IMP.Object):
1396  """Proxy of C++ IMP::multifit::AssemblyHeader class"""
1397  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1398 
1399  def __init__(self):
1400  """__init__(IMP::multifit::AssemblyHeader self) -> AssemblyHeader"""
1401  this = _IMP_multifit.new_AssemblyHeader()
1402  try:
1403  self.this.append(this)
1404  except:
1405  self.this = this
1406 
1407  def set_dens_fn(self, dens_fn):
1408  """set_dens_fn(AssemblyHeader self, std::string const & dens_fn)"""
1409  return _IMP_multifit.AssemblyHeader_set_dens_fn(self, dens_fn)
1410 
1411 
1412  def get_dens_fn(self):
1413  """get_dens_fn(AssemblyHeader self) -> std::string"""
1414  return _IMP_multifit.AssemblyHeader_get_dens_fn(self)
1415 
1416 
1417  def set_resolution(self, res):
1418  """set_resolution(AssemblyHeader self, float res)"""
1419  return _IMP_multifit.AssemblyHeader_set_resolution(self, res)
1420 
1421 
1422  def get_resolution(self):
1423  """get_resolution(AssemblyHeader self) -> float"""
1424  return _IMP_multifit.AssemblyHeader_get_resolution(self)
1425 
1426 
1427  def get_spacing(self):
1428  """get_spacing(AssemblyHeader self) -> float"""
1429  return _IMP_multifit.AssemblyHeader_get_spacing(self)
1430 
1431 
1432  def set_spacing(self, spacing):
1433  """set_spacing(AssemblyHeader self, float spacing)"""
1434  return _IMP_multifit.AssemblyHeader_set_spacing(self, spacing)
1435 
1436 
1437  def set_threshold(self, t):
1438  """set_threshold(AssemblyHeader self, float t)"""
1439  return _IMP_multifit.AssemblyHeader_set_threshold(self, t)
1440 
1441 
1442  def get_threshold(self):
1443  """get_threshold(AssemblyHeader self) -> float"""
1444  return _IMP_multifit.AssemblyHeader_get_threshold(self)
1445 
1446 
1447  def get_origin(self):
1448  """get_origin(AssemblyHeader self) -> Vector3D"""
1449  return _IMP_multifit.AssemblyHeader_get_origin(self)
1450 
1451 
1452  def set_origin(self, origin):
1453  """set_origin(AssemblyHeader self, Vector3D origin)"""
1454  return _IMP_multifit.AssemblyHeader_set_origin(self, origin)
1455 
1456 
1457  def get_coarse_ap_fn(self):
1458  """get_coarse_ap_fn(AssemblyHeader self) -> std::string"""
1459  return _IMP_multifit.AssemblyHeader_get_coarse_ap_fn(self)
1460 
1461 
1462  def set_coarse_ap_fn(self, new_fn):
1463  """set_coarse_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1464  return _IMP_multifit.AssemblyHeader_set_coarse_ap_fn(self, new_fn)
1465 
1466 
1467  def get_coarse_over_sampled_ap_fn(self):
1468  """get_coarse_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1469  return _IMP_multifit.AssemblyHeader_get_coarse_over_sampled_ap_fn(self)
1470 
1471 
1472  def set_coarse_over_sampled_ap_fn(self, new_fn):
1473  """set_coarse_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1474  return _IMP_multifit.AssemblyHeader_set_coarse_over_sampled_ap_fn(self, new_fn)
1475 
1476 
1477  def get_fine_ap_fn(self):
1478  """get_fine_ap_fn(AssemblyHeader self) -> std::string"""
1479  return _IMP_multifit.AssemblyHeader_get_fine_ap_fn(self)
1480 
1481 
1482  def set_fine_ap_fn(self, new_fn):
1483  """set_fine_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1484  return _IMP_multifit.AssemblyHeader_set_fine_ap_fn(self, new_fn)
1485 
1486 
1487  def get_fine_over_sampled_ap_fn(self):
1488  """get_fine_over_sampled_ap_fn(AssemblyHeader self) -> std::string"""
1489  return _IMP_multifit.AssemblyHeader_get_fine_over_sampled_ap_fn(self)
1490 
1491 
1492  def set_fine_over_sampled_ap_fn(self, new_fn):
1493  """set_fine_over_sampled_ap_fn(AssemblyHeader self, std::string const & new_fn)"""
1494  return _IMP_multifit.AssemblyHeader_set_fine_over_sampled_ap_fn(self, new_fn)
1495 
1496 
1497  def get_version_info(self):
1498  """get_version_info(AssemblyHeader self) -> VersionInfo"""
1499  return _IMP_multifit.AssemblyHeader_get_version_info(self)
1500 
1501 
1502  def __str__(self):
1503  """__str__(AssemblyHeader self) -> std::string"""
1504  return _IMP_multifit.AssemblyHeader___str__(self)
1505 
1506 
1507  def __repr__(self):
1508  """__repr__(AssemblyHeader self) -> std::string"""
1509  return _IMP_multifit.AssemblyHeader___repr__(self)
1510 
1511 
1512  @staticmethod
1513  def get_from(o):
1514  return _object_cast_to_AssemblyHeader(o)
1515 
1516 AssemblyHeader_swigregister = _IMP_multifit.AssemblyHeader_swigregister
1517 AssemblyHeader_swigregister(AssemblyHeader)
1518 
1519 class SettingsData(IMP.Object):
1520  """Proxy of C++ IMP::multifit::SettingsData class"""
1521  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1522 
1523  def __init__(self):
1524  """__init__(IMP::multifit::SettingsData self) -> SettingsData"""
1525  this = _IMP_multifit.new_SettingsData()
1526  try:
1527  self.this.append(this)
1528  except:
1529  self.this = this
1530 
1531  def show_component_header_line(*args):
1532  """
1533  show_component_header_line(_ostream out)
1534  show_component_header_line()
1535  """
1536  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1537 
1538  show_component_header_line = staticmethod(show_component_header_line)
1539 
1540  def get_component_header_line():
1541  """get_component_header_line() -> std::string"""
1542  return _IMP_multifit.SettingsData_get_component_header_line()
1543 
1544  get_component_header_line = staticmethod(get_component_header_line)
1545 
1546  def show_density_header_line(*args):
1547  """
1548  show_density_header_line(_ostream out)
1549  show_density_header_line()
1550  """
1551  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1552 
1553  show_density_header_line = staticmethod(show_density_header_line)
1554 
1555  def get_density_header_line():
1556  """get_density_header_line() -> std::string"""
1557  return _IMP_multifit.SettingsData_get_density_header_line()
1558 
1559  get_density_header_line = staticmethod(get_density_header_line)
1560 
1561  def set_assembly_filename(self, fn):
1562  """set_assembly_filename(SettingsData self, std::string const & fn)"""
1563  return _IMP_multifit.SettingsData_set_assembly_filename(self, fn)
1564 
1565 
1566  def get_assembly_filename(self):
1567  """get_assembly_filename(SettingsData self) -> char const *"""
1568  return _IMP_multifit.SettingsData_get_assembly_filename(self)
1569 
1570 
1571  def set_assembly_header(self, h):
1572  """set_assembly_header(SettingsData self, AssemblyHeader h)"""
1573  return _IMP_multifit.SettingsData_set_assembly_header(self, h)
1574 
1575 
1576  def get_assembly_header(self):
1577  """get_assembly_header(SettingsData self) -> AssemblyHeader"""
1578  return _IMP_multifit.SettingsData_get_assembly_header(self)
1579 
1580 
1581  def set_data_path(self, fn):
1582  """set_data_path(SettingsData self, std::string const & fn)"""
1583  return _IMP_multifit.SettingsData_set_data_path(self, fn)
1584 
1585 
1586  def get_data_path(self):
1587  """get_data_path(SettingsData self) -> std::string"""
1588  return _IMP_multifit.SettingsData_get_data_path(self)
1589 
1590 
1591  def get_version_info(self):
1592  """get_version_info(SettingsData self) -> VersionInfo"""
1593  return _IMP_multifit.SettingsData_get_version_info(self)
1594 
1595  def __get_component_headers(self): return IMP._list_util.VarList(getdimfunc=self.get_number_of_component_headers, getfunc=self.get_component_header, erasefunc=self.erase_component_header, appendfunc=self.add_component_header, extendfunc=self.add_component_headers, clearfunc=self.clear_component_headers, indexfunc=self._python_index_component_header)
1596  def __set_component_headers(self, obj): IMP._list_util.set_varlist(self.component_headers, obj)
1597  def __del_component_headers(self): IMP._list_util.del_varlist(self.component_headers)
1598  component_headers = property(__get_component_headers, __set_component_headers, __del_component_headers, doc="List of ##ucnames")
1599 
1600  def remove_component_header(self, d):
1601  """remove_component_header(SettingsData self, ComponentHeader d)"""
1602  return _IMP_multifit.SettingsData_remove_component_header(self, d)
1603 
1604 
1605  def _python_index_component_header(self, d, start, stop):
1606  """_python_index_component_header(SettingsData self, ComponentHeader d, unsigned int start, unsigned int stop) -> unsigned int"""
1607  return _IMP_multifit.SettingsData__python_index_component_header(self, d, start, stop)
1608 
1609 
1610  def remove_component_headers(self, d):
1611  """remove_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & d)"""
1612  return _IMP_multifit.SettingsData_remove_component_headers(self, d)
1613 
1614 
1615  def set_component_headers(self, ps):
1616  """set_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & ps)"""
1617  return _IMP_multifit.SettingsData_set_component_headers(self, ps)
1618 
1619 
1620  def set_component_headers_order(self, objs):
1621  """set_component_headers_order(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1622  return _IMP_multifit.SettingsData_set_component_headers_order(self, objs)
1623 
1624 
1625  def add_component_header(self, obj):
1626  """add_component_header(SettingsData self, ComponentHeader obj) -> unsigned int"""
1627  return _IMP_multifit.SettingsData_add_component_header(self, obj)
1628 
1629 
1630  def add_component_headers(self, objs):
1631  """add_component_headers(SettingsData self, IMP::multifit::ComponentHeaders const & objs)"""
1632  return _IMP_multifit.SettingsData_add_component_headers(self, objs)
1633 
1634 
1635  def clear_component_headers(self):
1636  """clear_component_headers(SettingsData self)"""
1637  return _IMP_multifit.SettingsData_clear_component_headers(self)
1638 
1639 
1640  def get_number_of_component_headers(self):
1641  """get_number_of_component_headers(SettingsData self) -> unsigned int"""
1642  return _IMP_multifit.SettingsData_get_number_of_component_headers(self)
1643 
1644 
1645  def get_has_component_headers(self):
1646  """get_has_component_headers(SettingsData self) -> bool"""
1647  return _IMP_multifit.SettingsData_get_has_component_headers(self)
1648 
1649 
1650  def get_component_header(self, i):
1651  """get_component_header(SettingsData self, unsigned int i) -> ComponentHeader"""
1652  return _IMP_multifit.SettingsData_get_component_header(self, i)
1653 
1654 
1655  def get_component_headers(self):
1656  """get_component_headers(SettingsData self) -> IMP::multifit::ComponentHeaders"""
1657  return _IMP_multifit.SettingsData_get_component_headers(self)
1658 
1659 
1660  def erase_component_header(self, i):
1661  """erase_component_header(SettingsData self, unsigned int i)"""
1662  return _IMP_multifit.SettingsData_erase_component_header(self, i)
1663 
1664 
1665  def reserve_component_headers(self, sz):
1666  """reserve_component_headers(SettingsData self, unsigned int sz)"""
1667  return _IMP_multifit.SettingsData_reserve_component_headers(self, sz)
1668 
1669 
1670  def __str__(self):
1671  """__str__(SettingsData self) -> std::string"""
1672  return _IMP_multifit.SettingsData___str__(self)
1673 
1674 
1675  def __repr__(self):
1676  """__repr__(SettingsData self) -> std::string"""
1677  return _IMP_multifit.SettingsData___repr__(self)
1678 
1679 
1680  @staticmethod
1681  def get_from(o):
1682  return _object_cast_to_SettingsData(o)
1683 
1684 SettingsData_swigregister = _IMP_multifit.SettingsData_swigregister
1685 SettingsData_swigregister(SettingsData)
1686 
1687 def SettingsData_show_component_header_line(*args):
1688  """
1689  show_component_header_line(_ostream out)
1690  SettingsData_show_component_header_line()
1691  """
1692  return _IMP_multifit.SettingsData_show_component_header_line(*args)
1693 
1694 def SettingsData_get_component_header_line():
1695  """SettingsData_get_component_header_line() -> std::string"""
1696  return _IMP_multifit.SettingsData_get_component_header_line()
1697 
1698 def SettingsData_show_density_header_line(*args):
1699  """
1700  show_density_header_line(_ostream out)
1701  SettingsData_show_density_header_line()
1702  """
1703  return _IMP_multifit.SettingsData_show_density_header_line(*args)
1704 
1705 def SettingsData_get_density_header_line():
1706  """SettingsData_get_density_header_line() -> std::string"""
1707  return _IMP_multifit.SettingsData_get_density_header_line()
1708 
1709 
1710 def read_settings(filename):
1711  """read_settings(char const * filename) -> SettingsData"""
1712  return _IMP_multifit.read_settings(filename)
1713 
1714 def write_settings(filename, sd):
1715  """write_settings(char const * filename, SettingsData sd)"""
1716  return _IMP_multifit.write_settings(filename, sd)
1717 class WeightedExcludedVolumeRestraint(IMP.Restraint):
1718  """Proxy of C++ IMP::multifit::WeightedExcludedVolumeRestraint class"""
1719  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1720 
1721  def __init__(self, *args):
1722  """
1723  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner, FloatKey weight_key) -> WeightedExcludedVolumeRestraint
1724  __init__(IMP::multifit::WeightedExcludedVolumeRestraint self, IMP::core::RigidBodies rbs, Refiner refiner) -> WeightedExcludedVolumeRestraint
1725  """
1726  this = _IMP_multifit.new_WeightedExcludedVolumeRestraint(*args)
1727  try:
1728  self.this.append(this)
1729  except:
1730  self.this = this
1731 
1732  def do_get_inputs(self):
1733  """do_get_inputs(WeightedExcludedVolumeRestraint self) -> IMP::ModelObjectsTemp"""
1734  return _IMP_multifit.WeightedExcludedVolumeRestraint_do_get_inputs(self)
1735 
1736 
1737  def get_version_info(self):
1738  """get_version_info(WeightedExcludedVolumeRestraint self) -> VersionInfo"""
1739  return _IMP_multifit.WeightedExcludedVolumeRestraint_get_version_info(self)
1740 
1741 
1742  def __str__(self):
1743  """__str__(WeightedExcludedVolumeRestraint self) -> std::string"""
1744  return _IMP_multifit.WeightedExcludedVolumeRestraint___str__(self)
1745 
1746 
1747  def __repr__(self):
1748  """__repr__(WeightedExcludedVolumeRestraint self) -> std::string"""
1749  return _IMP_multifit.WeightedExcludedVolumeRestraint___repr__(self)
1750 
1751 
1752  @staticmethod
1753  def get_from(o):
1754  return _object_cast_to_WeightedExcludedVolumeRestraint(o)
1755 
1756 WeightedExcludedVolumeRestraint_swigregister = _IMP_multifit.WeightedExcludedVolumeRestraint_swigregister
1757 WeightedExcludedVolumeRestraint_swigregister(WeightedExcludedVolumeRestraint)
1758 
1759 class FFTFittingOutput(IMP.Object):
1760  """Proxy of C++ IMP::multifit::FFTFittingOutput class"""
1761  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1762 
1763  def __init__(self):
1764  """__init__(IMP::multifit::FFTFittingOutput self) -> FFTFittingOutput"""
1765  this = _IMP_multifit.new_FFTFittingOutput()
1766  try:
1767  self.this.append(this)
1768  except:
1769  self.this = this
1770 
1771  def get_version_info(self):
1772  """get_version_info(FFTFittingOutput self) -> VersionInfo"""
1773  return _IMP_multifit.FFTFittingOutput_get_version_info(self)
1774 
1775  best_fits_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_fits__get, _IMP_multifit.FFTFittingOutput_best_fits__set)
1776  best_trans_per_rot_ = _swig_property(_IMP_multifit.FFTFittingOutput_best_trans_per_rot__get, _IMP_multifit.FFTFittingOutput_best_trans_per_rot__set)
1777 
1778  def __str__(self):
1779  """__str__(FFTFittingOutput self) -> std::string"""
1780  return _IMP_multifit.FFTFittingOutput___str__(self)
1781 
1782 
1783  def __repr__(self):
1784  """__repr__(FFTFittingOutput self) -> std::string"""
1785  return _IMP_multifit.FFTFittingOutput___repr__(self)
1786 
1787 
1788  @staticmethod
1789  def get_from(o):
1790  return _object_cast_to_FFTFittingOutput(o)
1791 
1792 FFTFittingOutput_swigregister = _IMP_multifit.FFTFittingOutput_swigregister
1793 FFTFittingOutput_swigregister(FFTFittingOutput)
1794 
1795 class FFTFitting(IMP.Object):
1796  """Proxy of C++ IMP::multifit::FFTFitting class"""
1797  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1798 
1799  def get_version_info(self):
1800  """get_version_info(FFTFitting self) -> VersionInfo"""
1801  return _IMP_multifit.FFTFitting_get_version_info(self)
1802 
1803 
1804  def __init__(self):
1805  """__init__(IMP::multifit::FFTFitting self) -> FFTFitting"""
1806  this = _IMP_multifit.new_FFTFitting()
1807  try:
1808  self.this.append(this)
1809  except:
1810  self.this = this
1811 
1812  def do_global_fitting(self, *args):
1813  """
1814  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1, std::string const & angles_filename) -> FFTFittingOutput
1815  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True, int num_angle_per_voxel=1) -> FFTFittingOutput
1816  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=True) -> FFTFittingOutput
1817  do_global_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle) -> FFTFittingOutput
1818  """
1819  return _IMP_multifit.FFTFitting_do_global_fitting(self, *args)
1820 
1821 
1822  def do_local_fitting(self, *args):
1823  """
1824  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, std::string const & angles_filename) -> FFTFittingOutput
1825  do_local_fitting(FFTFitting self, DensityMap dmap, double density_threshold, Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation) -> FFTFittingOutput
1826  """
1827  return _IMP_multifit.FFTFitting_do_local_fitting(self, *args)
1828 
1829 
1830  def __str__(self):
1831  """__str__(FFTFitting self) -> std::string"""
1832  return _IMP_multifit.FFTFitting___str__(self)
1833 
1834 
1835  def __repr__(self):
1836  """__repr__(FFTFitting self) -> std::string"""
1837  return _IMP_multifit.FFTFitting___repr__(self)
1838 
1839 
1840  @staticmethod
1841  def get_from(o):
1842  return _object_cast_to_FFTFitting(o)
1843 
1844 FFTFitting_swigregister = _IMP_multifit.FFTFitting_swigregister
1845 FFTFitting_swigregister(FFTFitting)
1846 
1847 
1848 def fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad):
1849  """fft_based_rigid_fitting(Hierarchy mol2fit, DensityMap dmap, double density_threshold, double angle_sampling_interval_rad) -> IMP::multifit::FittingSolutionRecords"""
1850  return _IMP_multifit.fft_based_rigid_fitting(mol2fit, dmap, density_threshold, angle_sampling_interval_rad)
1851 
1852 def remove_background(dmap, threshold, edge_threshold):
1853  """remove_background(DensityMap dmap, float threshold, float edge_threshold) -> DensityMap"""
1854  return _IMP_multifit.remove_background(dmap, threshold, edge_threshold)
1855 
1856 def get_connected_components(dmap, threshold, edge_threshold):
1857  """get_connected_components(DensityMap dmap, float threshold, float edge_threshold) -> IMP::IntsList"""
1858  return _IMP_multifit.get_connected_components(dmap, threshold, edge_threshold)
1859 
1860 def get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename):
1861  """get_segmentation(DensityMap dmap, double apix, double density_threshold, int num_means, std::string const pdb_filename, std::string const cmm_filename, std::string const seg_filename, std::string const txt_filename)"""
1862  return _IMP_multifit.get_segmentation(dmap, apix, density_threshold, num_means, pdb_filename, cmm_filename, seg_filename, txt_filename)
1863 class ComplementarityRestraint(IMP.Restraint):
1864  """Proxy of C++ IMP::multifit::ComplementarityRestraint class"""
1865  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1866 
1867  def __init__(self, *args):
1868  """
1869  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b, std::string name) -> ComplementarityRestraint
1870  __init__(IMP::multifit::ComplementarityRestraint self, IMP::ParticlesTemp const & a, IMP::ParticlesTemp const & b) -> ComplementarityRestraint
1871  """
1872  this = _IMP_multifit.new_ComplementarityRestraint(*args)
1873  try:
1874  self.this.append(this)
1875  except:
1876  self.this = this
1877 
1878  def set_maximum_penetration_score(self, s):
1879  """set_maximum_penetration_score(ComplementarityRestraint self, double s)"""
1880  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration_score(self, s)
1881 
1882 
1883  def set_maximum_penetration(self, d):
1884  """set_maximum_penetration(ComplementarityRestraint self, double d)"""
1885  return _IMP_multifit.ComplementarityRestraint_set_maximum_penetration(self, d)
1886 
1887 
1888  def set_maximum_separation(self, s):
1889  """set_maximum_separation(ComplementarityRestraint self, double s)"""
1890  return _IMP_multifit.ComplementarityRestraint_set_maximum_separation(self, s)
1891 
1892 
1893  def set_complementarity_thickness(self, th):
1894  """set_complementarity_thickness(ComplementarityRestraint self, double th)"""
1895  return _IMP_multifit.ComplementarityRestraint_set_complementarity_thickness(self, th)
1896 
1897 
1898  def set_complementarity_value(self, th):
1899  """set_complementarity_value(ComplementarityRestraint self, double th)"""
1900  return _IMP_multifit.ComplementarityRestraint_set_complementarity_value(self, th)
1901 
1902 
1903  def set_interior_layer_thickness(self, th):
1904  """set_interior_layer_thickness(ComplementarityRestraint self, double th)"""
1905  return _IMP_multifit.ComplementarityRestraint_set_interior_layer_thickness(self, th)
1906 
1907 
1908  def set_penetration_coefficient(self, pc):
1909  """set_penetration_coefficient(ComplementarityRestraint self, double pc)"""
1910  return _IMP_multifit.ComplementarityRestraint_set_penetration_coefficient(self, pc)
1911 
1912 
1913  def set_complementarity_coefficient(self, cc):
1914  """set_complementarity_coefficient(ComplementarityRestraint self, double cc)"""
1915  return _IMP_multifit.ComplementarityRestraint_set_complementarity_coefficient(self, cc)
1916 
1917 
1918  def set_boundary_coefficient(self, bc):
1919  """set_boundary_coefficient(ComplementarityRestraint self, double bc)"""
1920  return _IMP_multifit.ComplementarityRestraint_set_boundary_coefficient(self, bc)
1921 
1922 
1923  def get_voxel_size(self):
1924  """get_voxel_size(ComplementarityRestraint self) -> float"""
1925  return _IMP_multifit.ComplementarityRestraint_get_voxel_size(self)
1926 
1927 
1928  def do_get_inputs(self):
1929  """do_get_inputs(ComplementarityRestraint self) -> IMP::ModelObjectsTemp"""
1930  return _IMP_multifit.ComplementarityRestraint_do_get_inputs(self)
1931 
1932 
1933  def get_version_info(self):
1934  """get_version_info(ComplementarityRestraint self) -> VersionInfo"""
1935  return _IMP_multifit.ComplementarityRestraint_get_version_info(self)
1936 
1937 
1938  def __str__(self):
1939  """__str__(ComplementarityRestraint self) -> std::string"""
1940  return _IMP_multifit.ComplementarityRestraint___str__(self)
1941 
1942 
1943  def __repr__(self):
1944  """__repr__(ComplementarityRestraint self) -> std::string"""
1945  return _IMP_multifit.ComplementarityRestraint___repr__(self)
1946 
1947 
1948  @staticmethod
1949  def get_from(o):
1950  return _object_cast_to_ComplementarityRestraint(o)
1951 
1952 ComplementarityRestraint_swigregister = _IMP_multifit.ComplementarityRestraint_swigregister
1953 ComplementarityRestraint_swigregister(ComplementarityRestraint)
1954 
1955 
1956 def read_fitting_solutions(fitting_fn):
1957  """read_fitting_solutions(char const * fitting_fn) -> IMP::multifit::FittingSolutionRecords"""
1958  return _IMP_multifit.read_fitting_solutions(fitting_fn)
1959 
1960 def write_fitting_solutions(fitting_fn, fit_sols, num_sols=-1):
1961  """
1962  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols, int num_sols=-1)
1963  write_fitting_solutions(char const * fitting_fn, IMP::multifit::FittingSolutionRecords const & fit_sols)
1964  """
1965  return _IMP_multifit.write_fitting_solutions(fitting_fn, fit_sols, num_sols)
1966 
1967 def convert_em_to_multifit_format(em_fits):
1968  """convert_em_to_multifit_format(FittingSolutions em_fits) -> IMP::multifit::FittingSolutionRecords"""
1969  return _IMP_multifit.convert_em_to_multifit_format(em_fits)
1970 
1971 def convert_multifit_to_em_format(multifit_fits):
1972  """convert_multifit_to_em_format(IMP::multifit::FittingSolutionRecords const & multifit_fits) -> FittingSolutions"""
1973  return _IMP_multifit.convert_multifit_to_em_format(multifit_fits)
1974 
1975 def convert_transformations_to_multifit_format(trans):
1976  """convert_transformations_to_multifit_format(IMP::algebra::Transformation3Ds const & trans) -> IMP::multifit::FittingSolutionRecords"""
1977  return _IMP_multifit.convert_transformations_to_multifit_format(trans)
1978 
1979 def convert_multifit_format_to_transformations(recs):
1980  """convert_multifit_format_to_transformations(IMP::multifit::FittingSolutionRecords const & recs) -> IMP::algebra::Transformation3Ds"""
1981  return _IMP_multifit.convert_multifit_format_to_transformations(recs)
1982 
1983 def get_close_to_point(fit_sols, mh, ap, dist):
1984  """get_close_to_point(IMP::multifit::FittingSolutionRecords const & fit_sols, Hierarchy mh, Particle ap, IMP::Float dist) -> IMP::multifit::FittingSolutionRecords"""
1985  return _IMP_multifit.get_close_to_point(fit_sols, mh, ap, dist)
1986 class ProbabilisticAnchorGraph(IMP.Object):
1987  """Proxy of C++ IMP::multifit::ProbabilisticAnchorGraph class"""
1988  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
1989 
1990  def __init__(self, anchor_positions):
1991  """__init__(IMP::multifit::ProbabilisticAnchorGraph self, IMP::algebra::Vector3Ds anchor_positions) -> ProbabilisticAnchorGraph"""
1992  this = _IMP_multifit.new_ProbabilisticAnchorGraph(anchor_positions)
1993  try:
1994  self.this.append(this)
1995  except:
1996  self.this = this
1997 
1998  def add_edge(self, i, j):
1999  """add_edge(ProbabilisticAnchorGraph self, int i, int j)"""
2000  return _IMP_multifit.ProbabilisticAnchorGraph_add_edge(self, i, j)
2001 
2002 
2003  def set_particle_probabilities_on_anchors(self, p, sols):
2004  """set_particle_probabilities_on_anchors(ProbabilisticAnchorGraph self, Particle p, IMP::multifit::FittingSolutionRecords sols)"""
2005  return _IMP_multifit.ProbabilisticAnchorGraph_set_particle_probabilities_on_anchors(self, p, sols)
2006 
2007 
2008  def show(self, *args):
2009  """
2010  show(ProbabilisticAnchorGraph self, _ostream out)
2011  show(ProbabilisticAnchorGraph self)
2012  """
2013  return _IMP_multifit.ProbabilisticAnchorGraph_show(self, *args)
2014 
2015 
2016  def get_number_of_anchors(self):
2017  """get_number_of_anchors(ProbabilisticAnchorGraph self) -> unsigned int"""
2018  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_anchors(self)
2019 
2020 
2021  def get_number_of_edges(self):
2022  """get_number_of_edges(ProbabilisticAnchorGraph self) -> unsigned int"""
2023  return _IMP_multifit.ProbabilisticAnchorGraph_get_number_of_edges(self)
2024 
2025 
2026  def get_edge_list(self):
2027  """get_edge_list(ProbabilisticAnchorGraph self) -> IMP::IntRanges"""
2028  return _IMP_multifit.ProbabilisticAnchorGraph_get_edge_list(self)
2029 
2030 
2031  def get_anchors(self):
2032  """get_anchors(ProbabilisticAnchorGraph self) -> IMP::algebra::Vector3Ds"""
2033  return _IMP_multifit.ProbabilisticAnchorGraph_get_anchors(self)
2034 
2035 
2036  def get_particle_anchors(self, p, min_prob=0):
2037  """
2038  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p, float min_prob=0) -> IMP::algebra::Vector3Ds
2039  get_particle_anchors(ProbabilisticAnchorGraph self, Particle p) -> IMP::algebra::Vector3Ds
2040  """
2041  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_anchors(self, p, min_prob)
2042 
2043 
2044  def get_are_probabilities_for_particle_set(self, p):
2045  """get_are_probabilities_for_particle_set(ProbabilisticAnchorGraph self, Particle p) -> bool"""
2046  return _IMP_multifit.ProbabilisticAnchorGraph_get_are_probabilities_for_particle_set(self, p)
2047 
2048 
2049  def get_particle_probabilities(self, p):
2050  """get_particle_probabilities(ProbabilisticAnchorGraph self, Particle p) -> IMP::Floats"""
2051  return _IMP_multifit.ProbabilisticAnchorGraph_get_particle_probabilities(self, p)
2052 
2053 
2054  def get_version_info(self):
2055  """get_version_info(ProbabilisticAnchorGraph self) -> VersionInfo"""
2056  return _IMP_multifit.ProbabilisticAnchorGraph_get_version_info(self)
2057 
2058 
2059  def __str__(self):
2060  """__str__(ProbabilisticAnchorGraph self) -> std::string"""
2061  return _IMP_multifit.ProbabilisticAnchorGraph___str__(self)
2062 
2063 
2064  def __repr__(self):
2065  """__repr__(ProbabilisticAnchorGraph self) -> std::string"""
2066  return _IMP_multifit.ProbabilisticAnchorGraph___repr__(self)
2067 
2068 
2069  @staticmethod
2070  def get_from(o):
2071  return _object_cast_to_ProbabilisticAnchorGraph(o)
2072 
2073 ProbabilisticAnchorGraph_swigregister = _IMP_multifit.ProbabilisticAnchorGraph_swigregister
2074 ProbabilisticAnchorGraph_swigregister(ProbabilisticAnchorGraph)
2075 
2076 class ProteinRecordData(object):
2077  """Proxy of C++ IMP::multifit::ProteinRecordData class"""
2078  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2079 
2080  def reset_all(self):
2081  """reset_all(ProteinRecordData self)"""
2082  return _IMP_multifit.ProteinRecordData_reset_all(self)
2083 
2084 
2085  def __init__(self, *args):
2086  """
2087  __init__(IMP::multifit::ProteinRecordData self) -> ProteinRecordData
2088  __init__(IMP::multifit::ProteinRecordData self, std::string const & name) -> ProteinRecordData
2089  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, std::string const fn) -> ProteinRecordData
2090  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const fn) -> ProteinRecordData
2091  __init__(IMP::multifit::ProteinRecordData self, std::string const & name, int start_res, int end_res, std::string const & fn, std::string const & surface_fn, std::string const & ref_fn) -> ProteinRecordData
2092  """
2093  this = _IMP_multifit.new_ProteinRecordData(*args)
2094  try:
2095  self.this.append(this)
2096  except:
2097  self.this = this
2098 
2099  def show(self, *args):
2100  """
2101  show(ProteinRecordData self, _ostream out)
2102  show(ProteinRecordData self)
2103  """
2104  return _IMP_multifit.ProteinRecordData_show(self, *args)
2105 
2106  name_ = _swig_property(_IMP_multifit.ProteinRecordData_name__get, _IMP_multifit.ProteinRecordData_name__set)
2107  start_res_ = _swig_property(_IMP_multifit.ProteinRecordData_start_res__get, _IMP_multifit.ProteinRecordData_start_res__set)
2108  end_res_ = _swig_property(_IMP_multifit.ProteinRecordData_end_res__get, _IMP_multifit.ProteinRecordData_end_res__set)
2109  filename_ = _swig_property(_IMP_multifit.ProteinRecordData_filename__get, _IMP_multifit.ProteinRecordData_filename__set)
2110  surface_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_surface_filename__get, _IMP_multifit.ProteinRecordData_surface_filename__set)
2111  ref_filename_ = _swig_property(_IMP_multifit.ProteinRecordData_ref_filename__get, _IMP_multifit.ProteinRecordData_ref_filename__set)
2112 
2113  def __str__(self):
2114  """__str__(ProteinRecordData self) -> std::string"""
2115  return _IMP_multifit.ProteinRecordData___str__(self)
2116 
2117 
2118  def __repr__(self):
2119  """__repr__(ProteinRecordData self) -> std::string"""
2120  return _IMP_multifit.ProteinRecordData___repr__(self)
2121 
2122 
2123  def _get_as_binary(self):
2124  """_get_as_binary(ProteinRecordData self) -> PyObject *"""
2125  return _IMP_multifit.ProteinRecordData__get_as_binary(self)
2126 
2127 
2128  def _set_from_binary(self, p):
2129  """_set_from_binary(ProteinRecordData self, PyObject * p)"""
2130  return _IMP_multifit.ProteinRecordData__set_from_binary(self, p)
2131 
2132 
2133  def __getstate__(self):
2134  p = self._get_as_binary()
2135  if len(self.__dict__) > 1:
2136  d = self.__dict__.copy()
2137  del d['this']
2138  p = (d, p)
2139  return p
2140 
2141  def __setstate__(self, p):
2142  if not hasattr(self, 'this'):
2143  self.__init__()
2144  if isinstance(p, tuple):
2145  d, p = p
2146  self.__dict__.update(d)
2147  return self._set_from_binary(p)
2148 
2149  __swig_destroy__ = _IMP_multifit.delete_ProteinRecordData
2150  __del__ = lambda self: None
2151 ProteinRecordData_swigregister = _IMP_multifit.ProteinRecordData_swigregister
2152 ProteinRecordData_swigregister(ProteinRecordData)
2153 
2154 class ProteomicsData(IMP.Object):
2155  """Proxy of C++ IMP::multifit::ProteomicsData class"""
2156  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2157 
2158  def __init__(self):
2159  """__init__(IMP::multifit::ProteomicsData self) -> ProteomicsData"""
2160  this = _IMP_multifit.new_ProteomicsData()
2161  try:
2162  self.this.append(this)
2163  except:
2164  self.this = this
2165 
2166  def add_protein(self, *args):
2167  """
2168  add_protein(ProteomicsData self, std::string name, int start_res, int end_res, std::string const & mol_fn, std::string const & surface_fn, std::string const & ref_fn) -> int
2169  add_protein(ProteomicsData self, ProteinRecordData rec) -> int
2170  """
2171  return _IMP_multifit.ProteomicsData_add_protein(self, *args)
2172 
2173 
2174  def find(self, name):
2175  """find(ProteomicsData self, std::string const & name) -> int"""
2176  return _IMP_multifit.ProteomicsData_find(self, name)
2177 
2178 
2179  def add_interaction(self, ii, used_for_filter, linker_len):
2180  """add_interaction(ProteomicsData self, IMP::Ints const & ii, bool used_for_filter, float linker_len)"""
2181  return _IMP_multifit.ProteomicsData_add_interaction(self, ii, used_for_filter, linker_len)
2182 
2183 
2184  def add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len):
2185  """add_cross_link_interaction(ProteomicsData self, IMP::Int prot1, IMP::Int res1, IMP::Int prot2, IMP::Int res2, bool used_in_filter, IMP::Float linker_len)"""
2186  return _IMP_multifit.ProteomicsData_add_cross_link_interaction(self, prot1, res1, prot2, res2, used_in_filter, linker_len)
2187 
2188 
2189  def add_ev_pair(self, prot1, prot2):
2190  """add_ev_pair(ProteomicsData self, IMP::Int prot1, IMP::Int prot2)"""
2191  return _IMP_multifit.ProteomicsData_add_ev_pair(self, prot1, prot2)
2192 
2193 
2194  def get_number_of_proteins(self):
2195  """get_number_of_proteins(ProteomicsData self) -> int"""
2196  return _IMP_multifit.ProteomicsData_get_number_of_proteins(self)
2197 
2198 
2199  def get_number_of_interactions(self):
2200  """get_number_of_interactions(ProteomicsData self) -> int"""
2201  return _IMP_multifit.ProteomicsData_get_number_of_interactions(self)
2202 
2203 
2204  def get_interaction(self, interaction_ind):
2205  """get_interaction(ProteomicsData self, int interaction_ind) -> IMP::Ints"""
2206  return _IMP_multifit.ProteomicsData_get_interaction(self, interaction_ind)
2207 
2208 
2209  def get_interaction_part_of_filter(self, interaction_ind):
2210  """get_interaction_part_of_filter(ProteomicsData self, int interaction_ind) -> bool"""
2211  return _IMP_multifit.ProteomicsData_get_interaction_part_of_filter(self, interaction_ind)
2212 
2213 
2214  def get_interaction_linker_length(self, interaction_ind):
2215  """get_interaction_linker_length(ProteomicsData self, int interaction_ind) -> int"""
2216  return _IMP_multifit.ProteomicsData_get_interaction_linker_length(self, interaction_ind)
2217 
2218 
2219  def get_number_of_cross_links(self):
2220  """get_number_of_cross_links(ProteomicsData self) -> int"""
2221  return _IMP_multifit.ProteomicsData_get_number_of_cross_links(self)
2222 
2223 
2224  def get_cross_link(self, xlink_ind):
2225  """get_cross_link(ProteomicsData self, int xlink_ind) -> std::pair< IMP::IntPair,IMP::IntPair >"""
2226  return _IMP_multifit.ProteomicsData_get_cross_link(self, xlink_ind)
2227 
2228 
2229  def get_cross_link_part_of_filter(self, xlink_ind):
2230  """get_cross_link_part_of_filter(ProteomicsData self, int xlink_ind) -> bool"""
2231  return _IMP_multifit.ProteomicsData_get_cross_link_part_of_filter(self, xlink_ind)
2232 
2233 
2234  def get_cross_link_length(self, xlink_ind):
2235  """get_cross_link_length(ProteomicsData self, int xlink_ind) -> float"""
2236  return _IMP_multifit.ProteomicsData_get_cross_link_length(self, xlink_ind)
2237 
2238 
2239  def get_number_of_ev_pairs(self):
2240  """get_number_of_ev_pairs(ProteomicsData self) -> int"""
2241  return _IMP_multifit.ProteomicsData_get_number_of_ev_pairs(self)
2242 
2243 
2244  def get_ev_pair(self, ev_ind):
2245  """get_ev_pair(ProteomicsData self, int ev_ind) -> IMP::IntPair"""
2246  return _IMP_multifit.ProteomicsData_get_ev_pair(self, ev_ind)
2247 
2248 
2249  def get_protein_name(self, protein_ind):
2250  """get_protein_name(ProteomicsData self, int protein_ind) -> std::string"""
2251  return _IMP_multifit.ProteomicsData_get_protein_name(self, protein_ind)
2252 
2253 
2254  def get_end_res(self, protein_ind):
2255  """get_end_res(ProteomicsData self, int protein_ind) -> int"""
2256  return _IMP_multifit.ProteomicsData_get_end_res(self, protein_ind)
2257 
2258 
2259  def get_start_res(self, protein_ind):
2260  """get_start_res(ProteomicsData self, int protein_ind) -> int"""
2261  return _IMP_multifit.ProteomicsData_get_start_res(self, protein_ind)
2262 
2263 
2264  def get_protein_filename(self, protein_ind):
2265  """get_protein_filename(ProteomicsData self, int protein_ind) -> std::string"""
2266  return _IMP_multifit.ProteomicsData_get_protein_filename(self, protein_ind)
2267 
2268 
2269  def get_reference_filename(self, protein_ind):
2270  """get_reference_filename(ProteomicsData self, int protein_ind) -> std::string"""
2271  return _IMP_multifit.ProteomicsData_get_reference_filename(self, protein_ind)
2272 
2273 
2274  def get_surface_filename(self, protein_ind):
2275  """get_surface_filename(ProteomicsData self, int protein_ind) -> std::string"""
2276  return _IMP_multifit.ProteomicsData_get_surface_filename(self, protein_ind)
2277 
2278 
2279  def get_protein_data(self, protein_ind):
2280  """get_protein_data(ProteomicsData self, int protein_ind) -> ProteinRecordData"""
2281  return _IMP_multifit.ProteomicsData_get_protein_data(self, protein_ind)
2282 
2283 
2284  def get_version_info(self):
2285  """get_version_info(ProteomicsData self) -> VersionInfo"""
2286  return _IMP_multifit.ProteomicsData_get_version_info(self)
2287 
2288 
2289  def get_num_allowed_violated_interactions(self):
2290  """get_num_allowed_violated_interactions(ProteomicsData self) -> int"""
2291  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_interactions(self)
2292 
2293 
2294  def set_num_allowed_violated_interactions(self, n):
2295  """set_num_allowed_violated_interactions(ProteomicsData self, int n)"""
2296  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_interactions(self, n)
2297 
2298 
2299  def get_num_allowed_violated_cross_links(self):
2300  """get_num_allowed_violated_cross_links(ProteomicsData self) -> int"""
2301  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_cross_links(self)
2302 
2303 
2304  def set_num_allowed_violated_cross_links(self, n):
2305  """set_num_allowed_violated_cross_links(ProteomicsData self, int n)"""
2306  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_cross_links(self, n)
2307 
2308 
2309  def get_num_allowed_violated_ev(self):
2310  """get_num_allowed_violated_ev(ProteomicsData self) -> int"""
2311  return _IMP_multifit.ProteomicsData_get_num_allowed_violated_ev(self)
2312 
2313 
2314  def set_num_allowed_violated_ev(self, n):
2315  """set_num_allowed_violated_ev(ProteomicsData self, int n)"""
2316  return _IMP_multifit.ProteomicsData_set_num_allowed_violated_ev(self, n)
2317 
2318 
2319  def __str__(self):
2320  """__str__(ProteomicsData self) -> std::string"""
2321  return _IMP_multifit.ProteomicsData___str__(self)
2322 
2323 
2324  def __repr__(self):
2325  """__repr__(ProteomicsData self) -> std::string"""
2326  return _IMP_multifit.ProteomicsData___repr__(self)
2327 
2328 
2329  @staticmethod
2330  def get_from(o):
2331  return _object_cast_to_ProteomicsData(o)
2332 
2333 ProteomicsData_swigregister = _IMP_multifit.ProteomicsData_swigregister
2334 ProteomicsData_swigregister(ProteomicsData)
2335 
2336 
2337 def read_proteomics_data(proteomics_fn):
2338  """read_proteomics_data(char const * proteomics_fn) -> ProteomicsData"""
2339  return _IMP_multifit.read_proteomics_data(proteomics_fn)
2340 
2341 def get_partial_proteomics_data(pd, prot_names):
2342  """get_partial_proteomics_data(ProteomicsData pd, IMP::Strings const & prot_names) -> ProteomicsData"""
2343  return _IMP_multifit.get_partial_proteomics_data(pd, prot_names)
2344 class AnchorsData(object):
2345  """Proxy of C++ IMP::multifit::AnchorsData class"""
2346  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2347 
2348  def __init__(self, *args):
2349  """
2350  __init__(IMP::multifit::AnchorsData self) -> AnchorsData
2351  __init__(IMP::multifit::AnchorsData self, IMP::algebra::Vector3Ds points, IMP::IntPairs edges) -> AnchorsData
2352  """
2353  this = _IMP_multifit.new_AnchorsData(*args)
2354  try:
2355  self.this.append(this)
2356  except:
2357  self.this = this
2358 
2359  def remove_edges_for_node(self, node_ind):
2360  """remove_edges_for_node(AnchorsData self, int node_ind)"""
2361  return _IMP_multifit.AnchorsData_remove_edges_for_node(self, node_ind)
2362 
2363 
2364  def get_number_of_points(self):
2365  """get_number_of_points(AnchorsData self) -> int"""
2366  return _IMP_multifit.AnchorsData_get_number_of_points(self)
2367 
2368 
2369  def get_number_of_edges(self):
2370  """get_number_of_edges(AnchorsData self) -> int"""
2371  return _IMP_multifit.AnchorsData_get_number_of_edges(self)
2372 
2373 
2374  def get_is_point_considered(self, node_ind):
2375  """get_is_point_considered(AnchorsData self, int node_ind) -> bool"""
2376  return _IMP_multifit.AnchorsData_get_is_point_considered(self, node_ind)
2377 
2378 
2379  def show(self, *args):
2380  """
2381  show(AnchorsData self, _ostream out)
2382  show(AnchorsData self)
2383  """
2384  return _IMP_multifit.AnchorsData_show(self, *args)
2385 
2386 
2387  def get_secondary_structure_is_set(self):
2388  """get_secondary_structure_is_set(AnchorsData self) -> bool"""
2389  return _IMP_multifit.AnchorsData_get_secondary_structure_is_set(self)
2390 
2391 
2392  def setup_secondary_structure(self, mdl):
2393  """setup_secondary_structure(AnchorsData self, Model mdl)"""
2394  return _IMP_multifit.AnchorsData_setup_secondary_structure(self, mdl)
2395 
2396 
2397  def set_secondary_structure_probabilities(self, *args):
2398  """
2399  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps, IMP::Ints const & indices)
2400  set_secondary_structure_probabilities(AnchorsData self, IMP::Particles const & ssres_ps)
2401  """
2402  return _IMP_multifit.AnchorsData_set_secondary_structure_probabilities(self, *args)
2403 
2404 
2405  def get_secondary_structure_particles(self):
2406  """get_secondary_structure_particles(AnchorsData self) -> IMP::Particles"""
2407  return _IMP_multifit.AnchorsData_get_secondary_structure_particles(self)
2408 
2409  points_ = _swig_property(_IMP_multifit.AnchorsData_points__get, _IMP_multifit.AnchorsData_points__set)
2410  consider_point_ = _swig_property(_IMP_multifit.AnchorsData_consider_point__get, _IMP_multifit.AnchorsData_consider_point__set)
2411  edges_ = _swig_property(_IMP_multifit.AnchorsData_edges__get, _IMP_multifit.AnchorsData_edges__set)
2412 
2413  def __str__(self):
2414  """__str__(AnchorsData self) -> std::string"""
2415  return _IMP_multifit.AnchorsData___str__(self)
2416 
2417 
2418  def __repr__(self):
2419  """__repr__(AnchorsData self) -> std::string"""
2420  return _IMP_multifit.AnchorsData___repr__(self)
2421 
2422  __swig_destroy__ = _IMP_multifit.delete_AnchorsData
2423  __del__ = lambda self: None
2424 AnchorsData_swigregister = _IMP_multifit.AnchorsData_swigregister
2425 AnchorsData_swigregister(AnchorsData)
2426 
2427 
2428 def read_anchors_data(txt_filename):
2429  """read_anchors_data(char const * txt_filename) -> AnchorsData"""
2430  return _IMP_multifit.read_anchors_data(txt_filename)
2431 
2432 def write_txt(txt_filename, ad):
2433  """write_txt(std::string const & txt_filename, AnchorsData ad)"""
2434  return _IMP_multifit.write_txt(txt_filename, ad)
2435 
2436 def write_cmm(cmm_filename, marker_set_name, dpa):
2437  """write_cmm(std::string const & cmm_filename, std::string const & marker_set_name, AnchorsData dpa)"""
2438  return _IMP_multifit.write_cmm(cmm_filename, marker_set_name, dpa)
2439 
2440 def create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius):
2441  """create_coarse_molecule_from_density(DensityMap dmap, float dens_threshold, int num_beads, Model mdl, float bead_radius) -> Hierarchy"""
2442  return _IMP_multifit.create_coarse_molecule_from_density(dmap, dens_threshold, num_beads, mdl, bead_radius)
2443 
2444 def create_hit_map(rb, rb_ref, sols, damp):
2445  """create_hit_map(RigidBody rb, Refiner rb_ref, IMP::multifit::FittingSolutionRecords const & sols, DensityMap damp) -> DensityMap"""
2446  return _IMP_multifit.create_hit_map(rb, rb_ref, sols, damp)
2447 
2448 def get_points_close_to_molecule(mh, points, max_dist):
2449  """get_points_close_to_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2450  return _IMP_multifit.get_points_close_to_molecule(mh, points, max_dist)
2451 
2452 def get_points_far_from_molecule(mh, points, max_dist):
2453  """get_points_far_from_molecule(Hierarchy mh, IMP::algebra::Vector3Ds const points, IMP::Float max_dist) -> IMP::algebra::Vector3Ds"""
2454  return _IMP_multifit.get_points_far_from_molecule(mh, points, max_dist)
2455 class RadiusOfGyrationRestraint(IMP.Restraint):
2456  """Proxy of C++ IMP::multifit::RadiusOfGyrationRestraint class"""
2457  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2458 
2459  def __init__(self, ps, num_residues, scale=1.):
2460  """
2461  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues, IMP::Float scale=1.) -> RadiusOfGyrationRestraint
2462  __init__(IMP::multifit::RadiusOfGyrationRestraint self, IMP::Particles ps, int num_residues) -> RadiusOfGyrationRestraint
2463  """
2464  this = _IMP_multifit.new_RadiusOfGyrationRestraint(ps, num_residues, scale)
2465  try:
2466  self.this.append(this)
2467  except:
2468  self.this = this
2469 
2470  def do_get_inputs(self):
2471  """do_get_inputs(RadiusOfGyrationRestraint self) -> IMP::ModelObjectsTemp"""
2472  return _IMP_multifit.RadiusOfGyrationRestraint_do_get_inputs(self)
2473 
2474 
2475  def get_version_info(self):
2476  """get_version_info(RadiusOfGyrationRestraint self) -> VersionInfo"""
2477  return _IMP_multifit.RadiusOfGyrationRestraint_get_version_info(self)
2478 
2479 
2480  def set_radius_of_gyration(self, r):
2481  """set_radius_of_gyration(RadiusOfGyrationRestraint self, IMP::Float r)"""
2482  return _IMP_multifit.RadiusOfGyrationRestraint_set_radius_of_gyration(self, r)
2483 
2484 
2485  def get_radius_of_gyration(self):
2486  """get_radius_of_gyration(RadiusOfGyrationRestraint self) -> IMP::Float"""
2487  return _IMP_multifit.RadiusOfGyrationRestraint_get_radius_of_gyration(self)
2488 
2489 
2490  def __str__(self):
2491  """__str__(RadiusOfGyrationRestraint self) -> std::string"""
2492  return _IMP_multifit.RadiusOfGyrationRestraint___str__(self)
2493 
2494 
2495  def __repr__(self):
2496  """__repr__(RadiusOfGyrationRestraint self) -> std::string"""
2497  return _IMP_multifit.RadiusOfGyrationRestraint___repr__(self)
2498 
2499 
2500  @staticmethod
2501  def get_from(o):
2502  return _object_cast_to_RadiusOfGyrationRestraint(o)
2503 
2504 RadiusOfGyrationRestraint_swigregister = _IMP_multifit.RadiusOfGyrationRestraint_swigregister
2505 RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)
2506 
2507 
2508 def get_approximated_radius_of_gyration(len):
2509  """get_approximated_radius_of_gyration(int len) -> float"""
2510  return _IMP_multifit.get_approximated_radius_of_gyration(len)
2511 
2512 def get_actual_radius_of_gyration(ps):
2513  """get_actual_radius_of_gyration(IMP::ParticlesTemp ps) -> float"""
2514  return _IMP_multifit.get_actual_radius_of_gyration(ps)
2515 
2516 def get_approximated_radius(len):
2517  """get_approximated_radius(int len) -> float"""
2518  return _IMP_multifit.get_approximated_radius(len)
2519 class ProteinsAnchorsSamplingSpace(object):
2520  """Proxy of C++ IMP::multifit::ProteinsAnchorsSamplingSpace class"""
2521  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2522 
2523  def __init__(self, prots=None):
2524  """
2525  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self, ProteomicsData prots=None) -> ProteinsAnchorsSamplingSpace
2526  __init__(IMP::multifit::ProteinsAnchorsSamplingSpace self) -> ProteinsAnchorsSamplingSpace
2527  """
2528  this = _IMP_multifit.new_ProteinsAnchorsSamplingSpace(prots)
2529  try:
2530  self.this.append(this)
2531  except:
2532  self.this = this
2533 
2534  def set_anchors(self, data):
2535  """set_anchors(ProteinsAnchorsSamplingSpace self, AnchorsData data)"""
2536  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors(self, data)
2537 
2538 
2539  def get_anchors(self):
2540  """get_anchors(ProteinsAnchorsSamplingSpace self) -> AnchorsData"""
2541  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors(self)
2542 
2543 
2544  def get_anchors_filename(self):
2545  """get_anchors_filename(ProteinsAnchorsSamplingSpace self) -> std::string"""
2546  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_anchors_filename(self)
2547 
2548 
2549  def set_anchors_filename(self, fn):
2550  """set_anchors_filename(ProteinsAnchorsSamplingSpace self, std::string const & fn)"""
2551  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_anchors_filename(self, fn)
2552 
2553 
2554  def get_proteomics_data(self):
2555  """get_proteomics_data(ProteinsAnchorsSamplingSpace self) -> ProteomicsData"""
2556  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_proteomics_data(self)
2557 
2558 
2559  def add_protein(self, rec):
2560  """add_protein(ProteinsAnchorsSamplingSpace self, ProteinRecordData rec)"""
2561  return _IMP_multifit.ProteinsAnchorsSamplingSpace_add_protein(self, rec)
2562 
2563 
2564  def get_paths_for_protein(self, prot_name):
2565  """get_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> IMP::IntsList"""
2566  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_for_protein(self, prot_name)
2567 
2568 
2569  def set_paths_filename_for_protein(self, prot_name, paths_filename):
2570  """set_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, std::string const & paths_filename)"""
2571  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_filename_for_protein(self, prot_name, paths_filename)
2572 
2573 
2574  def get_paths_filename_for_protein(self, prot_name):
2575  """get_paths_filename_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name) -> std::string"""
2576  return _IMP_multifit.ProteinsAnchorsSamplingSpace_get_paths_filename_for_protein(self, prot_name)
2577 
2578 
2579  def set_paths_for_protein(self, prot_name, paths):
2580  """set_paths_for_protein(ProteinsAnchorsSamplingSpace self, std::string const & prot_name, IMP::IntsList paths)"""
2581  return _IMP_multifit.ProteinsAnchorsSamplingSpace_set_paths_for_protein(self, prot_name, paths)
2582 
2583 
2584  def show(self, *args):
2585  """
2586  show(ProteinsAnchorsSamplingSpace self, _ostream s)
2587  show(ProteinsAnchorsSamplingSpace self)
2588  """
2589  return _IMP_multifit.ProteinsAnchorsSamplingSpace_show(self, *args)
2590 
2591 
2592  def __str__(self):
2593  """__str__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2594  return _IMP_multifit.ProteinsAnchorsSamplingSpace___str__(self)
2595 
2596 
2597  def __repr__(self):
2598  """__repr__(ProteinsAnchorsSamplingSpace self) -> std::string"""
2599  return _IMP_multifit.ProteinsAnchorsSamplingSpace___repr__(self)
2600 
2601  __swig_destroy__ = _IMP_multifit.delete_ProteinsAnchorsSamplingSpace
2602  __del__ = lambda self: None
2603 ProteinsAnchorsSamplingSpace_swigregister = _IMP_multifit.ProteinsAnchorsSamplingSpace_swigregister
2604 ProteinsAnchorsSamplingSpace_swigregister(ProteinsAnchorsSamplingSpace)
2605 
2606 
2607 def read_protein_anchors_mapping(*args):
2608  """
2609  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn, int max_paths) -> ProteinsAnchorsSamplingSpace
2610  read_protein_anchors_mapping(ProteomicsData prots, std::string const & anchors_prot_map_fn) -> ProteinsAnchorsSamplingSpace
2611  """
2612  return _IMP_multifit.read_protein_anchors_mapping(*args)
2613 
2614 def write_protein_anchors_mapping(*args):
2615  """
2616  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, std::string const & anchors_fn, std::vector< std::pair< IMP::String,IMP::String >,std::allocator< std::pair< IMP::String,IMP::String > > > const & prot_paths)
2617  write_protein_anchors_mapping(std::string const & anchors_prot_map_fn, ProteinsAnchorsSamplingSpace pa, IMP::Strings const & prot_names)
2618  """
2619  return _IMP_multifit.write_protein_anchors_mapping(*args)
2620 
2621 def get_part_of_sampling_space(prots_ss, prot_names):
2622  """get_part_of_sampling_space(ProteinsAnchorsSamplingSpace prots_ss, IMP::Strings const & prot_names) -> ProteinsAnchorsSamplingSpace"""
2623  return _IMP_multifit.get_part_of_sampling_space(prots_ss, prot_names)
2624 
2625 def get_partial_assembly_setting_data(prots_sd, prot_names):
2626  """get_partial_assembly_setting_data(SettingsData prots_sd, IMP::Strings const & prot_names) -> SettingsData"""
2627  return _IMP_multifit.get_partial_assembly_setting_data(prots_sd, prot_names)
2628 
2629 def read_paths(*args):
2630  """
2631  read_paths(char const * txt_filename, int max_paths) -> IMP::IntsList
2632  read_paths(char const * txt_filename) -> IMP::IntsList
2633  """
2634  return _IMP_multifit.read_paths(*args)
2635 
2636 def write_paths(paths, txt_filename):
2637  """write_paths(IMP::IntsList const & paths, std::string const & txt_filename)"""
2638  return _IMP_multifit.write_paths(paths, txt_filename)
2639 
2640 def molecule2anchors(mh, k):
2641  """molecule2anchors(Hierarchy mh, int k) -> AnchorsData"""
2642  return _IMP_multifit.molecule2anchors(mh, k)
2643 
2644 def get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename):
2645  """get_anchors_for_density(DensityMap dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)"""
2646  return _IMP_multifit.get_anchors_for_density(dmap, number_of_means, density_threshold, pdb_filename, cmm_filename, seg_filename, txt_filename)
2647 
2648 def get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd=0.7):
2649  """
2650  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs, IMP::Float max_rmsd=0.7) -> IMP::IntsList
2651  get_anchor_indices_matching_secondary_structure(AnchorsData ad, IMP::atom::SecondaryStructureResidues const & ssrs) -> IMP::IntsList
2652  """
2653  return _IMP_multifit.get_anchor_indices_matching_secondary_structure(ad, ssrs, max_rmsd)
2654 class DominoParams(object):
2655  """Proxy of C++ IMP::multifit::DominoParams class"""
2656  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2657 
2658  def __init__(self):
2659  """__init__(IMP::multifit::DominoParams self) -> DominoParams"""
2660  this = _IMP_multifit.new_DominoParams()
2661  try:
2662  self.this.append(this)
2663  except:
2664  self.this = this
2665 
2666  def add(self, pt):
2667  """add(DominoParams self, boost::property_tree::ptree const & pt)"""
2668  return _IMP_multifit.DominoParams_add(self, pt)
2669 
2670 
2671  def show(self, *args):
2672  """
2673  show(DominoParams self, _ostream s)
2674  show(DominoParams self)
2675  """
2676  return _IMP_multifit.DominoParams_show(self, *args)
2677 
2678  max_value_threshold_ = _swig_property(_IMP_multifit.DominoParams_max_value_threshold__get, _IMP_multifit.DominoParams_max_value_threshold__set)
2679  max_num_states_for_subset_ = _swig_property(_IMP_multifit.DominoParams_max_num_states_for_subset__get, _IMP_multifit.DominoParams_max_num_states_for_subset__set)
2680  max_anchor_penetration_ = _swig_property(_IMP_multifit.DominoParams_max_anchor_penetration__get, _IMP_multifit.DominoParams_max_anchor_penetration__set)
2681  heap_size_ = _swig_property(_IMP_multifit.DominoParams_heap_size__get, _IMP_multifit.DominoParams_heap_size__set)
2682  cache_size_ = _swig_property(_IMP_multifit.DominoParams_cache_size__get, _IMP_multifit.DominoParams_cache_size__set)
2683 
2684  def __str__(self):
2685  """__str__(DominoParams self) -> std::string"""
2686  return _IMP_multifit.DominoParams___str__(self)
2687 
2688 
2689  def __repr__(self):
2690  """__repr__(DominoParams self) -> std::string"""
2691  return _IMP_multifit.DominoParams___repr__(self)
2692 
2693 
2694  def _get_as_binary(self):
2695  """_get_as_binary(DominoParams self) -> PyObject *"""
2696  return _IMP_multifit.DominoParams__get_as_binary(self)
2697 
2698 
2699  def _set_from_binary(self, p):
2700  """_set_from_binary(DominoParams self, PyObject * p)"""
2701  return _IMP_multifit.DominoParams__set_from_binary(self, p)
2702 
2703 
2704  def __getstate__(self):
2705  p = self._get_as_binary()
2706  if len(self.__dict__) > 1:
2707  d = self.__dict__.copy()
2708  del d['this']
2709  p = (d, p)
2710  return p
2711 
2712  def __setstate__(self, p):
2713  if not hasattr(self, 'this'):
2714  self.__init__()
2715  if isinstance(p, tuple):
2716  d, p = p
2717  self.__dict__.update(d)
2718  return self._set_from_binary(p)
2719 
2720  __swig_destroy__ = _IMP_multifit.delete_DominoParams
2721  __del__ = lambda self: None
2722 DominoParams_swigregister = _IMP_multifit.DominoParams_swigregister
2723 DominoParams_swigregister(DominoParams)
2724 
2725 class XlinkParams(object):
2726  """Proxy of C++ IMP::multifit::XlinkParams class"""
2727  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2728 
2729  def __init__(self):
2730  """__init__(IMP::multifit::XlinkParams self) -> XlinkParams"""
2731  this = _IMP_multifit.new_XlinkParams()
2732  try:
2733  self.this.append(this)
2734  except:
2735  self.this = this
2736 
2737  def add(self, pt):
2738  """add(XlinkParams self, boost::property_tree::ptree const & pt)"""
2739  return _IMP_multifit.XlinkParams_add(self, pt)
2740 
2741 
2742  def show(self, *args):
2743  """
2744  show(XlinkParams self, _ostream s)
2745  show(XlinkParams self)
2746  """
2747  return _IMP_multifit.XlinkParams_show(self, *args)
2748 
2749  upper_bound_ = _swig_property(_IMP_multifit.XlinkParams_upper_bound__get, _IMP_multifit.XlinkParams_upper_bound__set)
2750  k_ = _swig_property(_IMP_multifit.XlinkParams_k__get, _IMP_multifit.XlinkParams_k__set)
2751  max_xlink_val_ = _swig_property(_IMP_multifit.XlinkParams_max_xlink_val__get, _IMP_multifit.XlinkParams_max_xlink_val__set)
2752  treat_between_residues_ = _swig_property(_IMP_multifit.XlinkParams_treat_between_residues__get, _IMP_multifit.XlinkParams_treat_between_residues__set)
2753 
2754  def __str__(self):
2755  """__str__(XlinkParams self) -> std::string"""
2756  return _IMP_multifit.XlinkParams___str__(self)
2757 
2758 
2759  def __repr__(self):
2760  """__repr__(XlinkParams self) -> std::string"""
2761  return _IMP_multifit.XlinkParams___repr__(self)
2762 
2763 
2764  def _get_as_binary(self):
2765  """_get_as_binary(XlinkParams self) -> PyObject *"""
2766  return _IMP_multifit.XlinkParams__get_as_binary(self)
2767 
2768 
2769  def _set_from_binary(self, p):
2770  """_set_from_binary(XlinkParams self, PyObject * p)"""
2771  return _IMP_multifit.XlinkParams__set_from_binary(self, p)
2772 
2773 
2774  def __getstate__(self):
2775  p = self._get_as_binary()
2776  if len(self.__dict__) > 1:
2777  d = self.__dict__.copy()
2778  del d['this']
2779  p = (d, p)
2780  return p
2781 
2782  def __setstate__(self, p):
2783  if not hasattr(self, 'this'):
2784  self.__init__()
2785  if isinstance(p, tuple):
2786  d, p = p
2787  self.__dict__.update(d)
2788  return self._set_from_binary(p)
2789 
2790  __swig_destroy__ = _IMP_multifit.delete_XlinkParams
2791  __del__ = lambda self: None
2792 XlinkParams_swigregister = _IMP_multifit.XlinkParams_swigregister
2793 XlinkParams_swigregister(XlinkParams)
2794 
2795 class ConnectivityParams(object):
2796  """Proxy of C++ IMP::multifit::ConnectivityParams class"""
2797  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2798 
2799  def __init__(self):
2800  """__init__(IMP::multifit::ConnectivityParams self) -> ConnectivityParams"""
2801  this = _IMP_multifit.new_ConnectivityParams()
2802  try:
2803  self.this.append(this)
2804  except:
2805  self.this = this
2806 
2807  def add(self, pt):
2808  """add(ConnectivityParams self, boost::property_tree::ptree const & pt)"""
2809  return _IMP_multifit.ConnectivityParams_add(self, pt)
2810 
2811 
2812  def show(self, *args):
2813  """
2814  show(ConnectivityParams self, _ostream s)
2815  show(ConnectivityParams self)
2816  """
2817  return _IMP_multifit.ConnectivityParams_show(self, *args)
2818 
2819  upper_bound_ = _swig_property(_IMP_multifit.ConnectivityParams_upper_bound__get, _IMP_multifit.ConnectivityParams_upper_bound__set)
2820  k_ = _swig_property(_IMP_multifit.ConnectivityParams_k__get, _IMP_multifit.ConnectivityParams_k__set)
2821  max_conn_rest_val_ = _swig_property(_IMP_multifit.ConnectivityParams_max_conn_rest_val__get, _IMP_multifit.ConnectivityParams_max_conn_rest_val__set)
2822 
2823  def __str__(self):
2824  """__str__(ConnectivityParams self) -> std::string"""
2825  return _IMP_multifit.ConnectivityParams___str__(self)
2826 
2827 
2828  def __repr__(self):
2829  """__repr__(ConnectivityParams self) -> std::string"""
2830  return _IMP_multifit.ConnectivityParams___repr__(self)
2831 
2832 
2833  def _get_as_binary(self):
2834  """_get_as_binary(ConnectivityParams self) -> PyObject *"""
2835  return _IMP_multifit.ConnectivityParams__get_as_binary(self)
2836 
2837 
2838  def _set_from_binary(self, p):
2839  """_set_from_binary(ConnectivityParams self, PyObject * p)"""
2840  return _IMP_multifit.ConnectivityParams__set_from_binary(self, p)
2841 
2842 
2843  def __getstate__(self):
2844  p = self._get_as_binary()
2845  if len(self.__dict__) > 1:
2846  d = self.__dict__.copy()
2847  del d['this']
2848  p = (d, p)
2849  return p
2850 
2851  def __setstate__(self, p):
2852  if not hasattr(self, 'this'):
2853  self.__init__()
2854  if isinstance(p, tuple):
2855  d, p = p
2856  self.__dict__.update(d)
2857  return self._set_from_binary(p)
2858 
2859  __swig_destroy__ = _IMP_multifit.delete_ConnectivityParams
2860  __del__ = lambda self: None
2861 ConnectivityParams_swigregister = _IMP_multifit.ConnectivityParams_swigregister
2862 ConnectivityParams_swigregister(ConnectivityParams)
2863 
2864 class FragmentsParams(object):
2865  """Proxy of C++ IMP::multifit::FragmentsParams class"""
2866  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2867 
2868  def __init__(self):
2869  """__init__(IMP::multifit::FragmentsParams self) -> FragmentsParams"""
2870  this = _IMP_multifit.new_FragmentsParams()
2871  try:
2872  self.this.append(this)
2873  except:
2874  self.this = this
2875 
2876  def add(self, pt):
2877  """add(FragmentsParams self, boost::property_tree::ptree const & pt)"""
2878  return _IMP_multifit.FragmentsParams_add(self, pt)
2879 
2880 
2881  def show(self, *args):
2882  """
2883  show(FragmentsParams self, _ostream s)
2884  show(FragmentsParams self)
2885  """
2886  return _IMP_multifit.FragmentsParams_show(self, *args)
2887 
2888  frag_len_ = _swig_property(_IMP_multifit.FragmentsParams_frag_len__get, _IMP_multifit.FragmentsParams_frag_len__set)
2889  bead_radius_scale_ = _swig_property(_IMP_multifit.FragmentsParams_bead_radius_scale__get, _IMP_multifit.FragmentsParams_bead_radius_scale__set)
2890  load_atomic_ = _swig_property(_IMP_multifit.FragmentsParams_load_atomic__get, _IMP_multifit.FragmentsParams_load_atomic__set)
2891  subunit_rigid_ = _swig_property(_IMP_multifit.FragmentsParams_subunit_rigid__get, _IMP_multifit.FragmentsParams_subunit_rigid__set)
2892 
2893  def __str__(self):
2894  """__str__(FragmentsParams self) -> std::string"""
2895  return _IMP_multifit.FragmentsParams___str__(self)
2896 
2897 
2898  def __repr__(self):
2899  """__repr__(FragmentsParams self) -> std::string"""
2900  return _IMP_multifit.FragmentsParams___repr__(self)
2901 
2902 
2903  def _get_as_binary(self):
2904  """_get_as_binary(FragmentsParams self) -> PyObject *"""
2905  return _IMP_multifit.FragmentsParams__get_as_binary(self)
2906 
2907 
2908  def _set_from_binary(self, p):
2909  """_set_from_binary(FragmentsParams self, PyObject * p)"""
2910  return _IMP_multifit.FragmentsParams__set_from_binary(self, p)
2911 
2912 
2913  def __getstate__(self):
2914  p = self._get_as_binary()
2915  if len(self.__dict__) > 1:
2916  d = self.__dict__.copy()
2917  del d['this']
2918  p = (d, p)
2919  return p
2920 
2921  def __setstate__(self, p):
2922  if not hasattr(self, 'this'):
2923  self.__init__()
2924  if isinstance(p, tuple):
2925  d, p = p
2926  self.__dict__.update(d)
2927  return self._set_from_binary(p)
2928 
2929  __swig_destroy__ = _IMP_multifit.delete_FragmentsParams
2930  __del__ = lambda self: None
2931 FragmentsParams_swigregister = _IMP_multifit.FragmentsParams_swigregister
2932 FragmentsParams_swigregister(FragmentsParams)
2933 
2934 class RogParams(object):
2935  """Proxy of C++ IMP::multifit::RogParams class"""
2936  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
2937 
2938  def __init__(self):
2939  """__init__(IMP::multifit::RogParams self) -> RogParams"""
2940  this = _IMP_multifit.new_RogParams()
2941  try:
2942  self.this.append(this)
2943  except:
2944  self.this = this
2945 
2946  def add(self, pt):
2947  """add(RogParams self, boost::property_tree::ptree const & pt)"""
2948  return _IMP_multifit.RogParams_add(self, pt)
2949 
2950 
2951  def get_max_score(self):
2952  """get_max_score(RogParams self) -> float"""
2953  return _IMP_multifit.RogParams_get_max_score(self)
2954 
2955 
2956  def get_scale(self):
2957  """get_scale(RogParams self) -> float"""
2958  return _IMP_multifit.RogParams_get_scale(self)
2959 
2960 
2961  def show(self, *args):
2962  """
2963  show(RogParams self, _ostream s)
2964  show(RogParams self)
2965  """
2966  return _IMP_multifit.RogParams_show(self, *args)
2967 
2968 
2969  def __str__(self):
2970  """__str__(RogParams self) -> std::string"""
2971  return _IMP_multifit.RogParams___str__(self)
2972 
2973 
2974  def __repr__(self):
2975  """__repr__(RogParams self) -> std::string"""
2976  return _IMP_multifit.RogParams___repr__(self)
2977 
2978 
2979  def _get_as_binary(self):
2980  """_get_as_binary(RogParams self) -> PyObject *"""
2981  return _IMP_multifit.RogParams__get_as_binary(self)
2982 
2983 
2984  def _set_from_binary(self, p):
2985  """_set_from_binary(RogParams self, PyObject * p)"""
2986  return _IMP_multifit.RogParams__set_from_binary(self, p)
2987 
2988 
2989  def __getstate__(self):
2990  p = self._get_as_binary()
2991  if len(self.__dict__) > 1:
2992  d = self.__dict__.copy()
2993  del d['this']
2994  p = (d, p)
2995  return p
2996 
2997  def __setstate__(self, p):
2998  if not hasattr(self, 'this'):
2999  self.__init__()
3000  if isinstance(p, tuple):
3001  d, p = p
3002  self.__dict__.update(d)
3003  return self._set_from_binary(p)
3004 
3005  __swig_destroy__ = _IMP_multifit.delete_RogParams
3006  __del__ = lambda self: None
3007 RogParams_swigregister = _IMP_multifit.RogParams_swigregister
3008 RogParams_swigregister(RogParams)
3009 
3010 class EVParams(object):
3011  """Proxy of C++ IMP::multifit::EVParams class"""
3012  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3013 
3014  def __init__(self):
3015  """__init__(IMP::multifit::EVParams self) -> EVParams"""
3016  this = _IMP_multifit.new_EVParams()
3017  try:
3018  self.this.append(this)
3019  except:
3020  self.this = this
3021 
3022  def add(self, pt):
3023  """add(EVParams self, boost::property_tree::ptree const & pt)"""
3024  return _IMP_multifit.EVParams_add(self, pt)
3025 
3026 
3027  def show(self, *args):
3028  """
3029  show(EVParams self, _ostream s)
3030  show(EVParams self)
3031  """
3032  return _IMP_multifit.EVParams_show(self, *args)
3033 
3034  pair_distance_ = _swig_property(_IMP_multifit.EVParams_pair_distance__get, _IMP_multifit.EVParams_pair_distance__set)
3035  pair_slack_ = _swig_property(_IMP_multifit.EVParams_pair_slack__get, _IMP_multifit.EVParams_pair_slack__set)
3036  hlb_mean_ = _swig_property(_IMP_multifit.EVParams_hlb_mean__get, _IMP_multifit.EVParams_hlb_mean__set)
3037  hlb_k_ = _swig_property(_IMP_multifit.EVParams_hlb_k__get, _IMP_multifit.EVParams_hlb_k__set)
3038  maximum_ev_score_for_pair_ = _swig_property(_IMP_multifit.EVParams_maximum_ev_score_for_pair__get, _IMP_multifit.EVParams_maximum_ev_score_for_pair__set)
3039  allowed_percentage_of_bad_pairs_ = _swig_property(_IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__get, _IMP_multifit.EVParams_allowed_percentage_of_bad_pairs__set)
3040  scoring_mode_ = _swig_property(_IMP_multifit.EVParams_scoring_mode__get, _IMP_multifit.EVParams_scoring_mode__set)
3041 
3042  def __str__(self):
3043  """__str__(EVParams self) -> std::string"""
3044  return _IMP_multifit.EVParams___str__(self)
3045 
3046 
3047  def __repr__(self):
3048  """__repr__(EVParams self) -> std::string"""
3049  return _IMP_multifit.EVParams___repr__(self)
3050 
3051 
3052  def _get_as_binary(self):
3053  """_get_as_binary(EVParams self) -> PyObject *"""
3054  return _IMP_multifit.EVParams__get_as_binary(self)
3055 
3056 
3057  def _set_from_binary(self, p):
3058  """_set_from_binary(EVParams self, PyObject * p)"""
3059  return _IMP_multifit.EVParams__set_from_binary(self, p)
3060 
3061 
3062  def __getstate__(self):
3063  p = self._get_as_binary()
3064  if len(self.__dict__) > 1:
3065  d = self.__dict__.copy()
3066  del d['this']
3067  p = (d, p)
3068  return p
3069 
3070  def __setstate__(self, p):
3071  if not hasattr(self, 'this'):
3072  self.__init__()
3073  if isinstance(p, tuple):
3074  d, p = p
3075  self.__dict__.update(d)
3076  return self._set_from_binary(p)
3077 
3078  __swig_destroy__ = _IMP_multifit.delete_EVParams
3079  __del__ = lambda self: None
3080 EVParams_swigregister = _IMP_multifit.EVParams_swigregister
3081 EVParams_swigregister(EVParams)
3082 
3083 class FiltersParams(object):
3084  """Proxy of C++ IMP::multifit::FiltersParams class"""
3085  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3086 
3087  def __init__(self):
3088  """__init__(IMP::multifit::FiltersParams self) -> FiltersParams"""
3089  this = _IMP_multifit.new_FiltersParams()
3090  try:
3091  self.this.append(this)
3092  except:
3093  self.this = this
3094 
3095  def add(self, pt):
3096  """add(FiltersParams self, boost::property_tree::ptree const & pt)"""
3097  return _IMP_multifit.FiltersParams_add(self, pt)
3098 
3099 
3100  def show(self, *args):
3101  """
3102  show(FiltersParams self, _ostream s)
3103  show(FiltersParams self)
3104  """
3105  return _IMP_multifit.FiltersParams_show(self, *args)
3106 
3107  max_num_violated_xlink_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_xlink__get, _IMP_multifit.FiltersParams_max_num_violated_xlink__set)
3108  max_num_violated_conn_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_conn__get, _IMP_multifit.FiltersParams_max_num_violated_conn__set)
3109  max_num_violated_ev_ = _swig_property(_IMP_multifit.FiltersParams_max_num_violated_ev__get, _IMP_multifit.FiltersParams_max_num_violated_ev__set)
3110 
3111  def __str__(self):
3112  """__str__(FiltersParams self) -> std::string"""
3113  return _IMP_multifit.FiltersParams___str__(self)
3114 
3115 
3116  def __repr__(self):
3117  """__repr__(FiltersParams self) -> std::string"""
3118  return _IMP_multifit.FiltersParams___repr__(self)
3119 
3120 
3121  def _get_as_binary(self):
3122  """_get_as_binary(FiltersParams self) -> PyObject *"""
3123  return _IMP_multifit.FiltersParams__get_as_binary(self)
3124 
3125 
3126  def _set_from_binary(self, p):
3127  """_set_from_binary(FiltersParams self, PyObject * p)"""
3128  return _IMP_multifit.FiltersParams__set_from_binary(self, p)
3129 
3130 
3131  def __getstate__(self):
3132  p = self._get_as_binary()
3133  if len(self.__dict__) > 1:
3134  d = self.__dict__.copy()
3135  del d['this']
3136  p = (d, p)
3137  return p
3138 
3139  def __setstate__(self, p):
3140  if not hasattr(self, 'this'):
3141  self.__init__()
3142  if isinstance(p, tuple):
3143  d, p = p
3144  self.__dict__.update(d)
3145  return self._set_from_binary(p)
3146 
3147  __swig_destroy__ = _IMP_multifit.delete_FiltersParams
3148  __del__ = lambda self: None
3149 FiltersParams_swigregister = _IMP_multifit.FiltersParams_swigregister
3150 FiltersParams_swigregister(FiltersParams)
3151 
3152 class FittingParams(object):
3153  """Proxy of C++ IMP::multifit::FittingParams class"""
3154  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3155 
3156  def __init__(self):
3157  """__init__(IMP::multifit::FittingParams self) -> FittingParams"""
3158  this = _IMP_multifit.new_FittingParams()
3159  try:
3160  self.this.append(this)
3161  except:
3162  self.this = this
3163 
3164  def add(self, pt):
3165  """add(FittingParams self, boost::property_tree::ptree const & pt)"""
3166  return _IMP_multifit.FittingParams_add(self, pt)
3167 
3168 
3169  def show(self, *args):
3170  """
3171  show(FittingParams self, _ostream s)
3172  show(FittingParams self)
3173  """
3174  return _IMP_multifit.FittingParams_show(self, *args)
3175 
3176  pca_max_angle_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_angle_diff__get, _IMP_multifit.FittingParams_pca_max_angle_diff__set)
3177  pca_max_size_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_size_diff__get, _IMP_multifit.FittingParams_pca_max_size_diff__set)
3178  pca_max_cent_dist_diff_ = _swig_property(_IMP_multifit.FittingParams_pca_max_cent_dist_diff__get, _IMP_multifit.FittingParams_pca_max_cent_dist_diff__set)
3179  max_asmb_fit_score_ = _swig_property(_IMP_multifit.FittingParams_max_asmb_fit_score__get, _IMP_multifit.FittingParams_max_asmb_fit_score__set)
3180 
3181  def __str__(self):
3182  """__str__(FittingParams self) -> std::string"""
3183  return _IMP_multifit.FittingParams___str__(self)
3184 
3185 
3186  def __repr__(self):
3187  """__repr__(FittingParams self) -> std::string"""
3188  return _IMP_multifit.FittingParams___repr__(self)
3189 
3190 
3191  def _get_as_binary(self):
3192  """_get_as_binary(FittingParams self) -> PyObject *"""
3193  return _IMP_multifit.FittingParams__get_as_binary(self)
3194 
3195 
3196  def _set_from_binary(self, p):
3197  """_set_from_binary(FittingParams self, PyObject * p)"""
3198  return _IMP_multifit.FittingParams__set_from_binary(self, p)
3199 
3200 
3201  def __getstate__(self):
3202  p = self._get_as_binary()
3203  if len(self.__dict__) > 1:
3204  d = self.__dict__.copy()
3205  del d['this']
3206  p = (d, p)
3207  return p
3208 
3209  def __setstate__(self, p):
3210  if not hasattr(self, 'this'):
3211  self.__init__()
3212  if isinstance(p, tuple):
3213  d, p = p
3214  self.__dict__.update(d)
3215  return self._set_from_binary(p)
3216 
3217  __swig_destroy__ = _IMP_multifit.delete_FittingParams
3218  __del__ = lambda self: None
3219 FittingParams_swigregister = _IMP_multifit.FittingParams_swigregister
3220 FittingParams_swigregister(FittingParams)
3221 
3222 class ComplementarityParams(object):
3223  """Proxy of C++ IMP::multifit::ComplementarityParams class"""
3224  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3225 
3226  def __init__(self):
3227  """__init__(IMP::multifit::ComplementarityParams self) -> ComplementarityParams"""
3228  this = _IMP_multifit.new_ComplementarityParams()
3229  try:
3230  self.this.append(this)
3231  except:
3232  self.this = this
3233 
3234  def add(self, pt):
3235  """add(ComplementarityParams self, boost::property_tree::ptree const & pt)"""
3236  return _IMP_multifit.ComplementarityParams_add(self, pt)
3237 
3238 
3239  def show(self, *args):
3240  """
3241  show(ComplementarityParams self, _ostream s)
3242  show(ComplementarityParams self)
3243  """
3244  return _IMP_multifit.ComplementarityParams_show(self, *args)
3245 
3246  max_score_ = _swig_property(_IMP_multifit.ComplementarityParams_max_score__get, _IMP_multifit.ComplementarityParams_max_score__set)
3247  max_penetration_ = _swig_property(_IMP_multifit.ComplementarityParams_max_penetration__get, _IMP_multifit.ComplementarityParams_max_penetration__set)
3248  interior_layer_thickness_ = _swig_property(_IMP_multifit.ComplementarityParams_interior_layer_thickness__get, _IMP_multifit.ComplementarityParams_interior_layer_thickness__set)
3249  boundary_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_boundary_coef__get, _IMP_multifit.ComplementarityParams_boundary_coef__set)
3250  comp_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_comp_coef__get, _IMP_multifit.ComplementarityParams_comp_coef__set)
3251  penetration_coef_ = _swig_property(_IMP_multifit.ComplementarityParams_penetration_coef__get, _IMP_multifit.ComplementarityParams_penetration_coef__set)
3252 
3253  def __str__(self):
3254  """__str__(ComplementarityParams self) -> std::string"""
3255  return _IMP_multifit.ComplementarityParams___str__(self)
3256 
3257 
3258  def __repr__(self):
3259  """__repr__(ComplementarityParams self) -> std::string"""
3260  return _IMP_multifit.ComplementarityParams___repr__(self)
3261 
3262 
3263  def _get_as_binary(self):
3264  """_get_as_binary(ComplementarityParams self) -> PyObject *"""
3265  return _IMP_multifit.ComplementarityParams__get_as_binary(self)
3266 
3267 
3268  def _set_from_binary(self, p):
3269  """_set_from_binary(ComplementarityParams self, PyObject * p)"""
3270  return _IMP_multifit.ComplementarityParams__set_from_binary(self, p)
3271 
3272 
3273  def __getstate__(self):
3274  p = self._get_as_binary()
3275  if len(self.__dict__) > 1:
3276  d = self.__dict__.copy()
3277  del d['this']
3278  p = (d, p)
3279  return p
3280 
3281  def __setstate__(self, p):
3282  if not hasattr(self, 'this'):
3283  self.__init__()
3284  if isinstance(p, tuple):
3285  d, p = p
3286  self.__dict__.update(d)
3287  return self._set_from_binary(p)
3288 
3289  __swig_destroy__ = _IMP_multifit.delete_ComplementarityParams
3290  __del__ = lambda self: None
3291 ComplementarityParams_swigregister = _IMP_multifit.ComplementarityParams_swigregister
3292 ComplementarityParams_swigregister(ComplementarityParams)
3293 
3294 class AlignmentParams(object):
3295  """Proxy of C++ IMP::multifit::AlignmentParams class"""
3296  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3297 
3298  def __init__(self, *args):
3299  """
3300  __init__(IMP::multifit::AlignmentParams self) -> AlignmentParams
3301  __init__(IMP::multifit::AlignmentParams self, char const * param_filename) -> AlignmentParams
3302  """
3303  this = _IMP_multifit.new_AlignmentParams(*args)
3304  try:
3305  self.this.append(this)
3306  except:
3307  self.this = this
3308 
3309  def get_domino_params(self):
3310  """get_domino_params(AlignmentParams self) -> DominoParams"""
3311  return _IMP_multifit.AlignmentParams_get_domino_params(self)
3312 
3313 
3314  def get_fitting_params(self):
3315  """get_fitting_params(AlignmentParams self) -> FittingParams"""
3316  return _IMP_multifit.AlignmentParams_get_fitting_params(self)
3317 
3318 
3319  def get_complementarity_params(self):
3320  """get_complementarity_params(AlignmentParams self) -> ComplementarityParams"""
3321  return _IMP_multifit.AlignmentParams_get_complementarity_params(self)
3322 
3323 
3324  def get_xlink_params(self):
3325  """get_xlink_params(AlignmentParams self) -> XlinkParams"""
3326  return _IMP_multifit.AlignmentParams_get_xlink_params(self)
3327 
3328 
3329  def get_connectivity_params(self):
3330  """get_connectivity_params(AlignmentParams self) -> ConnectivityParams"""
3331  return _IMP_multifit.AlignmentParams_get_connectivity_params(self)
3332 
3333 
3334  def get_rog_params(self):
3335  """get_rog_params(AlignmentParams self) -> RogParams"""
3336  return _IMP_multifit.AlignmentParams_get_rog_params(self)
3337 
3338 
3339  def get_fragments_params(self):
3340  """get_fragments_params(AlignmentParams self) -> FragmentsParams"""
3341  return _IMP_multifit.AlignmentParams_get_fragments_params(self)
3342 
3343 
3344  def get_filters_params(self):
3345  """get_filters_params(AlignmentParams self) -> FiltersParams"""
3346  return _IMP_multifit.AlignmentParams_get_filters_params(self)
3347 
3348 
3349  def get_ev_params(self):
3350  """get_ev_params(AlignmentParams self) -> EVParams"""
3351  return _IMP_multifit.AlignmentParams_get_ev_params(self)
3352 
3353 
3354  def show(self, *args):
3355  """
3356  show(AlignmentParams self, _ostream s)
3357  show(AlignmentParams self)
3358  """
3359  return _IMP_multifit.AlignmentParams_show(self, *args)
3360 
3361 
3362  def __str__(self):
3363  """__str__(AlignmentParams self) -> std::string"""
3364  return _IMP_multifit.AlignmentParams___str__(self)
3365 
3366 
3367  def __repr__(self):
3368  """__repr__(AlignmentParams self) -> std::string"""
3369  return _IMP_multifit.AlignmentParams___repr__(self)
3370 
3371 
3372  def _get_as_binary(self):
3373  """_get_as_binary(AlignmentParams self) -> PyObject *"""
3374  return _IMP_multifit.AlignmentParams__get_as_binary(self)
3375 
3376 
3377  def _set_from_binary(self, p):
3378  """_set_from_binary(AlignmentParams self, PyObject * p)"""
3379  return _IMP_multifit.AlignmentParams__set_from_binary(self, p)
3380 
3381 
3382  def __getstate__(self):
3383  p = self._get_as_binary()
3384  if len(self.__dict__) > 1:
3385  d = self.__dict__.copy()
3386  del d['this']
3387  p = (d, p)
3388  return p
3389 
3390  def __setstate__(self, p):
3391  if not hasattr(self, 'this'):
3392  self.__init__()
3393  if isinstance(p, tuple):
3394  d, p = p
3395  self.__dict__.update(d)
3396  return self._set_from_binary(p)
3397 
3398  __swig_destroy__ = _IMP_multifit.delete_AlignmentParams
3399  __del__ = lambda self: None
3400 AlignmentParams_swigregister = _IMP_multifit.AlignmentParams_swigregister
3401 AlignmentParams_swigregister(AlignmentParams)
3402 
3403 class ProteomicsEMAlignmentAtomic(IMP.Object):
3404  """Proxy of C++ IMP::multifit::ProteomicsEMAlignmentAtomic class"""
3405  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3406 
3407  def __init__(self, mapping_data, asmb_data, align_param):
3408  """__init__(IMP::multifit::ProteomicsEMAlignmentAtomic self, ProteinsAnchorsSamplingSpace mapping_data, SettingsData asmb_data, AlignmentParams align_param) -> ProteomicsEMAlignmentAtomic"""
3409  this = _IMP_multifit.new_ProteomicsEMAlignmentAtomic(mapping_data, asmb_data, align_param)
3410  try:
3411  self.this.append(this)
3412  except:
3413  self.this = this
3414 
3415  def align(self):
3416  """align(ProteomicsEMAlignmentAtomic self)"""
3417  return _IMP_multifit.ProteomicsEMAlignmentAtomic_align(self)
3418 
3419 
3420  def add_all_restraints(self):
3421  """add_all_restraints(ProteomicsEMAlignmentAtomic self)"""
3422  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_all_restraints(self)
3423 
3424 
3425  def get_restraint_set(self):
3426  """get_restraint_set(ProteomicsEMAlignmentAtomic self) -> RestraintSet"""
3427  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_restraint_set(self)
3428 
3429 
3430  def add_states_and_filters(self):
3431  """add_states_and_filters(ProteomicsEMAlignmentAtomic self)"""
3432  return _IMP_multifit.ProteomicsEMAlignmentAtomic_add_states_and_filters(self)
3433 
3434 
3435  def show_domino_merge_tree(self):
3436  """show_domino_merge_tree(ProteomicsEMAlignmentAtomic self)"""
3437  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_domino_merge_tree(self)
3438 
3439 
3440  def get_combinations(self, uniques=False):
3441  """
3442  get_combinations(ProteomicsEMAlignmentAtomic self, bool uniques=False) -> IMP::domino::Assignments
3443  get_combinations(ProteomicsEMAlignmentAtomic self) -> IMP::domino::Assignments
3444  """
3445  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_combinations(self, uniques)
3446 
3447 
3448  def set_density_map(self, dmap, threshold):
3449  """set_density_map(ProteomicsEMAlignmentAtomic self, DensityMap dmap, float threshold)"""
3450  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_density_map(self, dmap, threshold)
3451 
3452 
3453  def get_molecules(self):
3454  """get_molecules(ProteomicsEMAlignmentAtomic self) -> IMP::atom::Hierarchies"""
3455  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_molecules(self)
3456 
3457 
3458  def get_rigid_bodies(self):
3459  """get_rigid_bodies(ProteomicsEMAlignmentAtomic self) -> IMP::core::RigidBodies"""
3460  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_rigid_bodies(self)
3461 
3462 
3463  def load_combination_of_states(self, state4particles):
3464  """load_combination_of_states(ProteomicsEMAlignmentAtomic self, IMP::Ints const & state4particles)"""
3465  return _IMP_multifit.ProteomicsEMAlignmentAtomic_load_combination_of_states(self, state4particles)
3466 
3467 
3468  def show_scores_header(self, *args):
3469  """
3470  show_scores_header(ProteomicsEMAlignmentAtomic self, _ostream ous)
3471  show_scores_header(ProteomicsEMAlignmentAtomic self)
3472  """
3473  return _IMP_multifit.ProteomicsEMAlignmentAtomic_show_scores_header(self, *args)
3474 
3475 
3476  def get_model(self):
3477  """get_model(ProteomicsEMAlignmentAtomic self) -> Model"""
3478  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_model(self)
3479 
3480 
3481  def set_fast_scoring(self, state):
3482  """set_fast_scoring(ProteomicsEMAlignmentAtomic self, bool state)"""
3483  return _IMP_multifit.ProteomicsEMAlignmentAtomic_set_fast_scoring(self, state)
3484 
3485 
3486  def get_version_info(self):
3487  """get_version_info(ProteomicsEMAlignmentAtomic self) -> VersionInfo"""
3488  return _IMP_multifit.ProteomicsEMAlignmentAtomic_get_version_info(self)
3489 
3490 
3491  def __str__(self):
3492  """__str__(ProteomicsEMAlignmentAtomic self) -> std::string"""
3493  return _IMP_multifit.ProteomicsEMAlignmentAtomic___str__(self)
3494 
3495 
3496  def __repr__(self):
3497  """__repr__(ProteomicsEMAlignmentAtomic self) -> std::string"""
3498  return _IMP_multifit.ProteomicsEMAlignmentAtomic___repr__(self)
3499 
3500 
3501  @staticmethod
3502  def get_from(o):
3503  return _object_cast_to_ProteomicsEMAlignmentAtomic(o)
3504 
3505 ProteomicsEMAlignmentAtomic_swigregister = _IMP_multifit.ProteomicsEMAlignmentAtomic_swigregister
3506 ProteomicsEMAlignmentAtomic_swigregister(ProteomicsEMAlignmentAtomic)
3507 
3508 
3509 def write_connolly_surface(atoms, fn, density, probe_radius):
3510  """write_connolly_surface(IMP::atom::Atoms atoms, TextOutput fn, float density, float probe_radius)"""
3511  return _IMP_multifit.write_connolly_surface(atoms, fn, density, probe_radius)
3512 class Ensemble(IMP.Object):
3513  """Proxy of C++ IMP::multifit::Ensemble class"""
3514  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3515 
3516  def load_combination(self, fit_comb):
3517  """load_combination(Ensemble self, IMP::Ints fit_comb)"""
3518  return _IMP_multifit.Ensemble_load_combination(self, fit_comb)
3519 
3520 
3521  def unload_combination(self, fit_comb):
3522  """unload_combination(Ensemble self, IMP::Ints fit_comb)"""
3523  return _IMP_multifit.Ensemble_unload_combination(self, fit_comb)
3524 
3525 
3526  def add_component_and_fits(self, mh, fits):
3527  """add_component_and_fits(Ensemble self, Hierarchy mh, IMP::multifit::FittingSolutionRecords const & fits)"""
3528  return _IMP_multifit.Ensemble_add_component_and_fits(self, mh, fits)
3529 
3530 
3531  def get_molecules(self):
3532  """get_molecules(Ensemble self) -> IMP::atom::Hierarchies"""
3533  return _IMP_multifit.Ensemble_get_molecules(self)
3534 
3535 
3536  def get_rigid_bodies(self):
3537  """get_rigid_bodies(Ensemble self) -> IMP::core::RigidBodies"""
3538  return _IMP_multifit.Ensemble_get_rigid_bodies(self)
3539 
3540 
3541  def get_rmsd(self, second_xyz):
3542  """get_rmsd(Ensemble self, IMP::core::XYZs const & second_xyz) -> float"""
3543  return _IMP_multifit.Ensemble_get_rmsd(self, second_xyz)
3544 
3545 
3546  def __init__(self, sd, mapping_data):
3547  """__init__(IMP::multifit::Ensemble self, SettingsData sd, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3548  this = _IMP_multifit.new_Ensemble(sd, mapping_data)
3549  try:
3550  self.this.append(this)
3551  except:
3552  self.this = this
3553 
3554  def score_by_restraints(self, rs, combinations):
3555  """score_by_restraints(Ensemble self, IMP::Restraints rs, IMP::IntsList const & combinations) -> std::vector< IMP::Floats,std::allocator< IMP::Floats > >"""
3556  return _IMP_multifit.Ensemble_score_by_restraints(self, rs, combinations)
3557 
3558 
3559  def get_version_info(self):
3560  """get_version_info(Ensemble self) -> VersionInfo"""
3561  return _IMP_multifit.Ensemble_get_version_info(self)
3562 
3563 
3564  def __str__(self):
3565  """__str__(Ensemble self) -> std::string"""
3566  return _IMP_multifit.Ensemble___str__(self)
3567 
3568 
3569  def __repr__(self):
3570  """__repr__(Ensemble self) -> std::string"""
3571  return _IMP_multifit.Ensemble___repr__(self)
3572 
3573 
3574  @staticmethod
3575  def get_from(o):
3576  return _object_cast_to_Ensemble(o)
3577 
3578 Ensemble_swigregister = _IMP_multifit.Ensemble_swigregister
3579 Ensemble_swigregister(Ensemble)
3580 
3581 
3582 def load_ensemble(sd, mdl, mapping_data):
3583  """load_ensemble(SettingsData sd, Model mdl, ProteinsAnchorsSamplingSpace mapping_data) -> Ensemble"""
3584  return _IMP_multifit.load_ensemble(sd, mdl, mapping_data)
3585 class RigidLeavesRefiner(IMP.Refiner):
3586  """Proxy of C++ IMP::multifit::RigidLeavesRefiner class"""
3587  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
3588 
3589  def __init__(self, *args):
3590  """
3591  __init__(IMP::multifit::RigidLeavesRefiner self, std::string name) -> RigidLeavesRefiner
3592  __init__(IMP::multifit::RigidLeavesRefiner self) -> RigidLeavesRefiner
3593  """
3594  this = _IMP_multifit.new_RigidLeavesRefiner(*args)
3595  try:
3596  self.this.append(this)
3597  except:
3598  self.this = this
3599 
3600  def do_get_inputs(self, m, pis):
3601  """do_get_inputs(RigidLeavesRefiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3602  return _IMP_multifit.RigidLeavesRefiner_do_get_inputs(self, m, pis)
3603 
3604 
3605  def get_version_info(self):
3606  """get_version_info(RigidLeavesRefiner self) -> VersionInfo"""
3607  return _IMP_multifit.RigidLeavesRefiner_get_version_info(self)
3608 
3609 
3610  def __str__(self):
3611  """__str__(RigidLeavesRefiner self) -> std::string"""
3612  return _IMP_multifit.RigidLeavesRefiner___str__(self)
3613 
3614 
3615  def __repr__(self):
3616  """__repr__(RigidLeavesRefiner self) -> std::string"""
3617  return _IMP_multifit.RigidLeavesRefiner___repr__(self)
3618 
3619 
3620  @staticmethod
3621  def get_from(o):
3622  return _object_cast_to_RigidLeavesRefiner(o)
3623 
3624 RigidLeavesRefiner_swigregister = _IMP_multifit.RigidLeavesRefiner_swigregister
3625 RigidLeavesRefiner_swigregister(RigidLeavesRefiner)
3626 
3627 
3628 _all_commands = ["param", "anchors", "fit_fft", "cluster", "add_fit_rmsd",
3629  "indexes", "proteomics", "align", "models", "transforms",
3630  "score", "merge_tree", "reference", "refine_fft", "segment"]
3631 
3632 
3633 def get_module_version():
3634  """get_module_version() -> std::string const"""
3635  return _IMP_multifit.get_module_version()
3636 
3637 def get_example_path(fname):
3638  """get_example_path(std::string fname) -> std::string"""
3639  return _IMP_multifit.get_example_path(fname)
3640 
3641 def get_data_path(fname):
3642  """get_data_path(std::string fname) -> std::string"""
3643  return _IMP_multifit.get_data_path(fname)
3644 
3645 from . import _version_check
3646 _version_check.check_version(get_module_version())
3647 __version__ = get_module_version()
3648 
3649 
3650 
IMP::multifit::get_anchor_indices_matching_secondary_structure
IntsList get_anchor_indices_matching_secondary_structure(const AnchorsData &ad, const atom::SecondaryStructureResidues &ssrs, Float max_rmsd=0.7)
Get lists of anchors that match a sequence of secondary structures.
IMP::multifit::get_close_to_point
FittingSolutionRecords get_close_to_point(const FittingSolutionRecords &fit_sols, atom::Hierarchy mh, IMP::Particle *ap, Float dist)
prune solutions by distance to an anchor point
IMP::modeller::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::multifit::get_connected_components
IntsList get_connected_components(em::DensityMap *dmap, float threshold, float edge_threshold)
Return connected components based on density values.
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::multifit::remove_background
em::DensityMap * remove_background(em::DensityMap *dmap, float threshold, float edge_threshold)
Returns a map containing all density without the background.
IMP::multifit::get_part_of_sampling_space
ProteinsAnchorsSamplingSpace get_part_of_sampling_space(const ProteinsAnchorsSamplingSpace &prots_ss, const Strings &prot_names)
Get the sampling space of few of the proteins.
IMP::modeller::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::modeller::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::multifit::get_partial_assembly_setting_data
multifit::SettingsData * get_partial_assembly_setting_data(multifit::SettingsData *prots_sd, const Strings &prot_names)
Get the assembly data for a few of the proteins.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::multifit::pca_based_rigid_fitting
em::FittingSolutions pca_based_rigid_fitting(core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
Compute fitting scores for a given set of rigid transformations.
IMP::statistics
Code to compute statistical measures.
IMP::multifit::add_surface_index
void add_surface_index(core::Hierarchy mhd, Float apix, FloatKey shell_key=FloatKey("surf_ind"), FloatKey radius_key=core::XYZR::get_radius_key(), FloatKey weight_key=atom::Mass::get_mass_key())
Add shell index to leaves.
IMP::domino::get_index
Ints get_index(const ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
IMP::Object
Common base class for heavy weight IMP objects.
Definition: Object.h:106
IMP::multifit::get_anchors_for_density
void get_anchors_for_density(em::DensityMap *dmap, int number_of_means, float density_threshold, std::string pdb_filename, std::string cmm_filename, std::string seg_filename, std::string txt_filename)
Generate anchors in several formats for a given density map.
IMP::algebra::get_rmsd
double get_rmsd(const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2)
Definition: algebra/distance.h:47
IMP::algebra::get_radius_of_gyration
double get_radius_of_gyration(const Vector3Ds &ps)
Return the radius of gyration of a set of points.
Definition: Vector3D.h:77
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::multifit::write_fitting_solutions
void write_fitting_solutions(const char *fitting_fn, const FittingSolutionRecords &fit_sols, int num_sols=-1)
Write fitting solutions to a file.
IMP::multifit::read_proteomics_data
ProteomicsData * read_proteomics_data(const char *proteomics_fn)
Proteomics reader.
IMP::multifit::create_weighted_excluded_volume_restraint
IMP::Restraint * create_weighted_excluded_volume_restraint(core::RigidBody rb1, core::RigidBody rb2, FloatKey shell_key=FloatKey("surf_ind"))
Create a weighted excluded volume restraint between two rigid bodies.
IMP::multifit::get_points_close_to_molecule
algebra::Vector3Ds get_points_close_to_molecule(const atom::Hierarchy &mh, const algebra::Vector3Ds points, Float max_dist)
IMP::multifit::get_segmentation
void get_segmentation(em::DensityMap *dmap, double apix, double density_threshold, int num_means, const std::string pdb_filename, const std::string cmm_filename, const std::string seg_filename, const std::string txt_filename)
Segment a density map using the anchor graph.
IMP::multifit::write_connolly_surface
void write_connolly_surface(atom::Atoms atoms, TextOutput fn, float density, float probe_radius)
Write the Connolly surface for a set of atoms to a file.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:411
IMP::multifit::fft_based_rigid_fitting
multifit::FittingSolutionRecords fft_based_rigid_fitting(atom::Hierarchy mol2fit, em::DensityMap *dmap, double density_threshold, double angle_sampling_interval_rad)
FFT fit of a molecule in the density.
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::multifit::read_paths
IntsList read_paths(const char *txt_filename, int max_paths=INT_MAX)
Read paths.
IMP::multifit::read_fitting_solutions
FittingSolutionRecords read_fitting_solutions(const char *fitting_fn)
Fitting solutions reader.
IMP::Refiner
Abstract class to implement hierarchical methods.
Definition: Refiner.h:34
IMP::atom::get_resolution
double get_resolution(Model *m, ParticleIndex pi)
Estimate the resolution of the hierarchy as used by Representation.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::rmf
Support for the RMF file format for storing hierarchical molecular data and markup.
IMP::domino
Divide-and-conquer inferential optimization in discrete space.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53
IMP::multifit::create_coarse_molecule_from_density
atom::Hierarchy create_coarse_molecule_from_density(em::DensityMap *dmap, float dens_threshold, int num_beads, Model *mdl, float bead_radius)
Coarsen a density map based on voxels clustering.