11 from __future__
import print_function, division, absolute_import
17 from sys
import version_info
18 if version_info >= (2, 6, 0):
19 def swig_import_helper():
20 from os.path
import dirname
24 fp, pathname, description = imp.find_module(
'_IMP_mpi', [dirname(__file__)])
30 _mod = imp.load_module(
'_IMP_mpi', fp, pathname, description)
34 _IMP_mpi = swig_import_helper()
35 del swig_import_helper
40 _swig_property = property
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46 if (name ==
"thisown"):
47 return self.this.own(value)
49 if type(value).__name__ ==
'SwigPyObject':
50 self.__dict__[name] = value
52 method = class_type.__swig_setmethods__.get(name,
None)
54 return method(self, value)
56 object.__setattr__(self, name, value)
58 raise AttributeError(
"You cannot add attributes to %s" % self)
61 def _swig_setattr(self, class_type, name, value):
62 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66 if (name ==
"thisown"):
67 return self.this.own()
68 method = class_type.__swig_getmethods__.get(name,
None)
72 return object.__getattr__(self, name)
74 raise AttributeError(name)
76 def _swig_getattr(self, class_type, name):
77 return _swig_getattr_nondynamic(self, class_type, name, 0)
82 strthis =
"proxy of " + self.this.__repr__()
85 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
90 except AttributeError:
97 def _swig_setattr_nondynamic_method(set):
98 def set_attr(self, name, value):
99 if (name ==
"thisown"):
100 return self.this.own(value)
101 if hasattr(self, name)
or (name ==
"this"):
102 set(self, name, value)
104 raise AttributeError(
"You cannot add attributes to %s" % self)
110 weakref_proxy = weakref.proxy
112 weakref_proxy =
lambda x: x
115 class IMP_MPI_SwigPyIterator(object):
116 """Proxy of C++ swig::IMP_MPI_SwigPyIterator class"""
117 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
119 def __init__(self, *args, **kwargs):
120 raise AttributeError(
"No constructor defined - class is abstract")
121 __repr__ = _swig_repr
122 __swig_destroy__ = _IMP_mpi.delete_IMP_MPI_SwigPyIterator
123 __del__ =
lambda self:
None
126 """value(IMP_MPI_SwigPyIterator self) -> PyObject *"""
127 return _IMP_mpi.IMP_MPI_SwigPyIterator_value(self)
132 incr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator
133 incr(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator
135 return _IMP_mpi.IMP_MPI_SwigPyIterator_incr(self, n)
140 decr(IMP_MPI_SwigPyIterator self, size_t n=1) -> IMP_MPI_SwigPyIterator
141 decr(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator
143 return _IMP_mpi.IMP_MPI_SwigPyIterator_decr(self, n)
146 def distance(self, x):
147 """distance(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t"""
148 return _IMP_mpi.IMP_MPI_SwigPyIterator_distance(self, x)
152 """equal(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
153 return _IMP_mpi.IMP_MPI_SwigPyIterator_equal(self, x)
157 """copy(IMP_MPI_SwigPyIterator self) -> IMP_MPI_SwigPyIterator"""
158 return _IMP_mpi.IMP_MPI_SwigPyIterator_copy(self)
162 """next(IMP_MPI_SwigPyIterator self) -> PyObject *"""
163 return _IMP_mpi.IMP_MPI_SwigPyIterator_next(self)
167 """__next__(IMP_MPI_SwigPyIterator self) -> PyObject *"""
168 return _IMP_mpi.IMP_MPI_SwigPyIterator___next__(self)
172 """previous(IMP_MPI_SwigPyIterator self) -> PyObject *"""
173 return _IMP_mpi.IMP_MPI_SwigPyIterator_previous(self)
176 def advance(self, n):
177 """advance(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
178 return _IMP_mpi.IMP_MPI_SwigPyIterator_advance(self, n)
182 """__eq__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
183 return _IMP_mpi.IMP_MPI_SwigPyIterator___eq__(self, x)
187 """__ne__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> bool"""
188 return _IMP_mpi.IMP_MPI_SwigPyIterator___ne__(self, x)
191 def __iadd__(self, n):
192 """__iadd__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
193 return _IMP_mpi.IMP_MPI_SwigPyIterator___iadd__(self, n)
196 def __isub__(self, n):
197 """__isub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
198 return _IMP_mpi.IMP_MPI_SwigPyIterator___isub__(self, n)
201 def __add__(self, n):
202 """__add__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator"""
203 return _IMP_mpi.IMP_MPI_SwigPyIterator___add__(self, n)
206 def __sub__(self, *args):
208 __sub__(IMP_MPI_SwigPyIterator self, ptrdiff_t n) -> IMP_MPI_SwigPyIterator
209 __sub__(IMP_MPI_SwigPyIterator self, IMP_MPI_SwigPyIterator x) -> ptrdiff_t
211 return _IMP_mpi.IMP_MPI_SwigPyIterator___sub__(self, *args)
215 IMP_MPI_SwigPyIterator_swigregister = _IMP_mpi.IMP_MPI_SwigPyIterator_swigregister
216 IMP_MPI_SwigPyIterator_swigregister(IMP_MPI_SwigPyIterator)
225 _IMP_mpi.IMP_DEBUG_swigconstant(_IMP_mpi)
226 IMP_DEBUG = _IMP_mpi.IMP_DEBUG
228 _IMP_mpi.IMP_RELEASE_swigconstant(_IMP_mpi)
229 IMP_RELEASE = _IMP_mpi.IMP_RELEASE
231 _IMP_mpi.IMP_SILENT_swigconstant(_IMP_mpi)
232 IMP_SILENT = _IMP_mpi.IMP_SILENT
234 _IMP_mpi.IMP_PROGRESS_swigconstant(_IMP_mpi)
235 IMP_PROGRESS = _IMP_mpi.IMP_PROGRESS
237 _IMP_mpi.IMP_TERSE_swigconstant(_IMP_mpi)
238 IMP_TERSE = _IMP_mpi.IMP_TERSE
240 _IMP_mpi.IMP_VERBOSE_swigconstant(_IMP_mpi)
241 IMP_VERBOSE = _IMP_mpi.IMP_VERBOSE
243 _IMP_mpi.IMP_MEMORY_swigconstant(_IMP_mpi)
244 IMP_MEMORY = _IMP_mpi.IMP_MEMORY
246 _IMP_mpi.IMP_NONE_swigconstant(_IMP_mpi)
247 IMP_NONE = _IMP_mpi.IMP_NONE
249 _IMP_mpi.IMP_USAGE_swigconstant(_IMP_mpi)
250 IMP_USAGE = _IMP_mpi.IMP_USAGE
252 _IMP_mpi.IMP_INTERNAL_swigconstant(_IMP_mpi)
253 IMP_INTERNAL = _IMP_mpi.IMP_INTERNAL
255 _IMP_mpi.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_mpi)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_mpi.IMP_KERNEL_HAS_LOG4CXX
258 _IMP_mpi.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_mpi)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_mpi.IMP_COMPILER_HAS_DEBUG_VECTOR
261 _IMP_mpi.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_mpi)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_mpi.IMP_COMPILER_HAS_RANDOM_SHUFFLE
264 _IMP_mpi.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_mpi)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_mpi.IMP_COMPILER_HAS_THREE_WAY
267 _IMP_mpi.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_mpi)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_mpi.IMP_KERNEL_HAS_BOOST_RANDOM
270 _IMP_mpi.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_mpi)
271 IMP_KERNEL_HAS_NUMPY = _IMP_mpi.IMP_KERNEL_HAS_NUMPY
273 _IMP_mpi.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_mpi)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_mpi.IMP_KERNEL_HAS_GPERFTOOLS
276 _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_mpi)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
279 _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_mpi)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_mpi.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
282 _IMP_mpi.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_mpi)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_mpi.IMPKERNEL_SHOW_WARNINGS
286 class _DirectorObjects(object):
287 """@internal Simple class to keep references to director objects
288 to prevent premature deletion."""
291 def register(self, obj):
292 """Take a reference to a director object; will only work for
293 refcounted C++ classes"""
294 if hasattr(obj,
'get_ref_count'):
295 self._objects.append(obj)
297 """Only drop our reference and allow cleanup by Python if no other
298 Python references exist (we hold 3 references: one in self._objects,
299 one in x, and one in the argument list for getrefcount) *and* no
300 other C++ references exist (the Python object always holds one)"""
301 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
302 or x.get_ref_count() > 1]
306 def get_object_count(self):
307 """Get number of director objects (useful for testing only)"""
308 return len(self._objects)
309 _director_objects = _DirectorObjects()
311 class _ostream(object):
312 """Proxy of C++ std::ostream class"""
313 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
315 def __init__(self, *args, **kwargs):
316 raise AttributeError(
"No constructor defined")
317 __repr__ = _swig_repr
319 def write(self, osa_buf):
320 """write(_ostream self, char const * osa_buf)"""
321 return _IMP_mpi._ostream_write(self, osa_buf)
323 _ostream_swigregister = _IMP_mpi._ostream_swigregister
324 _ostream_swigregister(_ostream)
327 _IMP_mpi.IMP_HAS_NOEXCEPT_swigconstant(_IMP_mpi)
328 IMP_HAS_NOEXCEPT = _IMP_mpi.IMP_HAS_NOEXCEPT
330 _IMP_mpi.IMP_C_OPEN_BINARY_swigconstant(_IMP_mpi)
331 IMP_C_OPEN_BINARY = _IMP_mpi.IMP_C_OPEN_BINARY
334 _IMP_mpi.IMP_MPI_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_mpi)
335 IMP_MPI_HAS_BOOST_FILESYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_FILESYSTEM
337 _IMP_mpi.IMP_MPI_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_mpi)
338 IMP_MPI_HAS_BOOST_PROGRAMOPTIONS = _IMP_mpi.IMP_MPI_HAS_BOOST_PROGRAMOPTIONS
340 _IMP_mpi.IMP_MPI_HAS_BOOST_RANDOM_swigconstant(_IMP_mpi)
341 IMP_MPI_HAS_BOOST_RANDOM = _IMP_mpi.IMP_MPI_HAS_BOOST_RANDOM
343 _IMP_mpi.IMP_MPI_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_mpi)
344 IMP_MPI_HAS_BOOST_SERIALIZATION = _IMP_mpi.IMP_MPI_HAS_BOOST_SERIALIZATION
346 _IMP_mpi.IMP_MPI_HAS_BOOST_SYSTEM_swigconstant(_IMP_mpi)
347 IMP_MPI_HAS_BOOST_SYSTEM = _IMP_mpi.IMP_MPI_HAS_BOOST_SYSTEM
349 _IMP_mpi.IMP_MPI_HAS_NUMPY_swigconstant(_IMP_mpi)
350 IMP_MPI_HAS_NUMPY = _IMP_mpi.IMP_MPI_HAS_NUMPY
352 _IMP_mpi.IMPMPI_SHOW_WARNINGS_swigconstant(_IMP_mpi)
353 IMPMPI_SHOW_WARNINGS = _IMP_mpi.IMPMPI_SHOW_WARNINGS
355 _object_types.append(
"ReplicaExchange")
358 def _object_cast_to_ReplicaExchange(o):
359 """_object_cast_to_ReplicaExchange(Object o) -> ReplicaExchange"""
360 return _IMP_mpi._object_cast_to_ReplicaExchange(o)
362 """Proxy of C++ IMP::mpi::ReplicaExchange class"""
363 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
366 """__init__(IMP::mpi::ReplicaExchange self) -> ReplicaExchange"""
367 this = _IMP_mpi.new_ReplicaExchange()
369 self.this.append(this)
373 def set_my_parameter(self, key, values):
374 """set_my_parameter(ReplicaExchange self, std::string key, IMP::Floats values)"""
375 return _IMP_mpi.ReplicaExchange_set_my_parameter(self, key, values)
378 def get_my_parameter(self, key):
379 """get_my_parameter(ReplicaExchange self, std::string key) -> IMP::Floats"""
380 return _IMP_mpi.ReplicaExchange_get_my_parameter(self, key)
383 def get_friend_index(self, istep):
384 """get_friend_index(ReplicaExchange self, int istep) -> int"""
385 return _IMP_mpi.ReplicaExchange_get_friend_index(self, istep)
388 def get_exchange_array(self):
389 """get_exchange_array(ReplicaExchange self) -> IMP::Ints"""
390 return _IMP_mpi.ReplicaExchange_get_exchange_array(self)
393 def get_friend_parameter(self, key, findex):
394 """get_friend_parameter(ReplicaExchange self, std::string key, int findex) -> IMP::Floats"""
395 return _IMP_mpi.ReplicaExchange_get_friend_parameter(self, key, findex)
398 def do_exchange(self, myscore0, myscore1, findex):
399 """do_exchange(ReplicaExchange self, double myscore0, double myscore1, int findex) -> bool"""
400 return _IMP_mpi.ReplicaExchange_do_exchange(self, myscore0, myscore1, findex)
403 def create_temperatures(self, tmin, tmax, nrep):
404 """create_temperatures(ReplicaExchange self, double tmin, double tmax, int nrep) -> IMP::Floats"""
405 return _IMP_mpi.ReplicaExchange_create_temperatures(self, tmin, tmax, nrep)
408 def get_my_index(self):
409 """get_my_index(ReplicaExchange self) -> int"""
410 return _IMP_mpi.ReplicaExchange_get_my_index(self)
413 def get_number_of_replicas(self):
414 """get_number_of_replicas(ReplicaExchange self) -> int"""
415 return _IMP_mpi.ReplicaExchange_get_number_of_replicas(self)
418 def get_version_info(self):
419 """get_version_info(ReplicaExchange self) -> VersionInfo"""
420 return _IMP_mpi.ReplicaExchange_get_version_info(self)
424 """__str__(ReplicaExchange self) -> std::string"""
425 return _IMP_mpi.ReplicaExchange___str__(self)
429 """__repr__(ReplicaExchange self) -> std::string"""
430 return _IMP_mpi.ReplicaExchange___repr__(self)
435 return _object_cast_to_ReplicaExchange(o)
437 ReplicaExchange_swigregister = _IMP_mpi.ReplicaExchange_swigregister
438 ReplicaExchange_swigregister(ReplicaExchange)
442 """get_module_version() -> std::string const"""
443 return _IMP_mpi.get_module_version()
446 """get_example_path(std::string fname) -> std::string"""
447 return _IMP_mpi.get_example_path(fname)
450 """get_data_path(std::string fname) -> std::string"""
451 return _IMP_mpi.get_data_path(fname)
453 from .
import _version_check
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_module_version()
Return the version of this module, as a string.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
Common base class for heavy weight IMP objects.