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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
25  except ImportError:
26  import _IMP_gsl
27  return _IMP_gsl
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_gsl = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_gsl
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_GSL_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
127  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
133  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
134  """
135  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
141  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
142  """
143  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
153  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
158  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
163  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
168  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
173  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
178  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
183  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
188  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
193  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
198  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
203  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
209  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
216 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_gsl.IMP_DEBUG_swigconstant(_IMP_gsl)
226 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
227 
228 _IMP_gsl.IMP_RELEASE_swigconstant(_IMP_gsl)
229 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
230 
231 _IMP_gsl.IMP_SILENT_swigconstant(_IMP_gsl)
232 IMP_SILENT = _IMP_gsl.IMP_SILENT
233 
234 _IMP_gsl.IMP_PROGRESS_swigconstant(_IMP_gsl)
235 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
236 
237 _IMP_gsl.IMP_TERSE_swigconstant(_IMP_gsl)
238 IMP_TERSE = _IMP_gsl.IMP_TERSE
239 
240 _IMP_gsl.IMP_VERBOSE_swigconstant(_IMP_gsl)
241 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
242 
243 _IMP_gsl.IMP_MEMORY_swigconstant(_IMP_gsl)
244 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
245 
246 _IMP_gsl.IMP_NONE_swigconstant(_IMP_gsl)
247 IMP_NONE = _IMP_gsl.IMP_NONE
248 
249 _IMP_gsl.IMP_USAGE_swigconstant(_IMP_gsl)
250 IMP_USAGE = _IMP_gsl.IMP_USAGE
251 
252 _IMP_gsl.IMP_INTERNAL_swigconstant(_IMP_gsl)
253 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
254 
255 _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_gsl)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_gsl.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_gsl)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_gsl.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_gsl)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_gsl.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_gsl.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_gsl)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_gsl.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_gsl.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_gsl)
271 IMP_KERNEL_HAS_NUMPY = _IMP_gsl.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_gsl)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_gsl.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_gsl)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_gsl)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_gsl.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_gsl._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_gsl._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_gsl.IMP_HAS_NOEXCEPT_swigconstant(_IMP_gsl)
328 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
329 
330 _IMP_gsl.IMP_C_OPEN_BINARY_swigconstant(_IMP_gsl)
331 IMP_C_OPEN_BINARY = _IMP_gsl.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_gsl.IMP_CGAL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_gsl)
344 IMP_CGAL_HAS_BOOST_SERIALIZATION = _IMP_gsl.IMP_CGAL_HAS_BOOST_SERIALIZATION
345 
346 _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
347 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
348 
349 _IMP_gsl.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_gsl)
350 IMP_CGAL_HAS_NUMPY = _IMP_gsl.IMP_CGAL_HAS_NUMPY
351 
352 _IMP_gsl.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
353 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
354 import IMP.cgal
355 
356 _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
357 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
358 
359 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
360 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
361 
362 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
363 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
364 
365 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
366 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
367 
368 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_gsl)
369 IMP_ALGEBRA_HAS_BOOST_SERIALIZATION = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION
370 
371 _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
372 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
373 
374 _IMP_gsl.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_gsl)
375 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
376 
377 _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_gsl)
378 IMP_ALGEBRA_HAS_NUMPY = _IMP_gsl.IMP_ALGEBRA_HAS_NUMPY
379 
380 _IMP_gsl.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_gsl)
381 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
382 
383 _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_gsl)
384 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
385 import IMP.algebra
386 
387 _IMP_gsl.IMP_GSL_HAS_IMP_CGAL_swigconstant(_IMP_gsl)
388 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
389 
390 _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_gsl)
391 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
392 
393 _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_gsl)
394 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
395 
396 _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM_swigconstant(_IMP_gsl)
397 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
398 
399 _IMP_gsl.IMP_GSL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_gsl)
400 IMP_GSL_HAS_BOOST_SERIALIZATION = _IMP_gsl.IMP_GSL_HAS_BOOST_SERIALIZATION
401 
402 _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM_swigconstant(_IMP_gsl)
403 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
404 
405 _IMP_gsl.IMP_GSL_HAS_CGAL_swigconstant(_IMP_gsl)
406 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
407 
408 _IMP_gsl.IMP_GSL_HAS_NUMPY_swigconstant(_IMP_gsl)
409 IMP_GSL_HAS_NUMPY = _IMP_gsl.IMP_GSL_HAS_NUMPY
410 
411 _IMP_gsl.IMPGSL_SHOW_WARNINGS_swigconstant(_IMP_gsl)
412 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
413 
414 _object_types.append("GSLOptimizer")
415 
416 
417 def _object_cast_to_GSLOptimizer(o):
418  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
419  return _IMP_gsl._object_cast_to_GSLOptimizer(o)
420 
421 _object_types.append("ConjugateGradients")
422 
423 
424 def _object_cast_to_ConjugateGradients(o):
425  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
426  return _IMP_gsl._object_cast_to_ConjugateGradients(o)
427 
428 _object_types.append("QuasiNewton")
429 
430 
431 def _object_cast_to_QuasiNewton(o):
432  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
433  return _IMP_gsl._object_cast_to_QuasiNewton(o)
434 
435 _object_types.append("Simplex")
436 
437 
438 def _object_cast_to_Simplex(o):
439  """_object_cast_to_Simplex(Object o) -> Simplex"""
440  return _IMP_gsl._object_cast_to_Simplex(o)
441 class GSLOptimizer(IMP.AttributeOptimizer):
442  """Proxy of C++ IMP::gsl::GSLOptimizer class"""
443  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
444 
445  def __init__(self, m):
446  """__init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer"""
447  if self.__class__ == GSLOptimizer:
448  _self = None
449  else:
450  _self = self
451  this = _IMP_gsl.new_GSLOptimizer(_self, m)
452  try:
453  self.this.append(this)
454  except:
455  self.this = this
456 
457  if self.__class__ != GSLOptimizer:
458  _director_objects.register(self)
459 
460 
461 
462  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
463  __del__ = lambda self: None
464 
465  def set_stop_score(self, d):
466  """set_stop_score(GSLOptimizer self, double d)"""
467  return _IMP_gsl.GSLOptimizer_set_stop_score(self, d)
468 
469 
470  def __str__(self):
471  """__str__(GSLOptimizer self) -> std::string"""
472  return _IMP_gsl.GSLOptimizer___str__(self)
473 
474 
475  def __repr__(self):
476  """__repr__(GSLOptimizer self) -> std::string"""
477  return _IMP_gsl.GSLOptimizer___repr__(self)
478 
479 
480  @staticmethod
481  def get_from(o):
482  return _object_cast_to_GSLOptimizer(o)
483 
484 
485  def get_type_name(self):
486  return self.__class__.__name__
487  def do_show(self, out):
488  pass
489  def get_version_info(self):
490  if"IMP::gsl" == "IMP":
491  return VersionInfo(self.__module__,
492  __import__(self.__module__).get_module_version())
493  else:
494  return IMP.VersionInfo(self.__module__,
495  __import__(self.__module__).get_module_version())
496  @staticmethod
497  def get_from(o):
498  return _object_cast_to_GSLOptimizer(o)
499 
500  def __disown__(self):
501  self.this.disown()
502  _IMP_gsl.disown_GSLOptimizer(self)
503  return weakref_proxy(self)
504 
505  def do_destroy(self):
506  """do_destroy(GSLOptimizer self)"""
507  return _IMP_gsl.GSLOptimizer_do_destroy(self)
508 
509 
510  def handle_set_has_required_score_states(self, arg0):
511  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
512  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, arg0)
513 
514 
515  def do_get_inputs(self):
516  """do_get_inputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
517  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
518 
519 
520  def do_get_outputs(self):
521  """do_get_outputs(GSLOptimizer self) -> IMP::ModelObjectsTemp"""
522  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
523 
524 
525  def do_get_interactions(self):
526  """do_get_interactions(GSLOptimizer self) -> IMP::ModelObjectsTemps"""
527  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
528 
529 
530  def do_optimize(self, ns):
531  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
532  return _IMP_gsl.GSLOptimizer_do_optimize(self, ns)
533 
534 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
535 GSLOptimizer_swigregister(GSLOptimizer)
536 
537 class ConjugateGradients(GSLOptimizer):
538  """Proxy of C++ IMP::gsl::ConjugateGradients class"""
539  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
540 
541  def __init__(self, m):
542  """__init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients"""
543  this = _IMP_gsl.new_ConjugateGradients(m)
544  try:
545  self.this.append(this)
546  except:
547  self.this = this
548 
549  def set_threshold(self, mg):
550  """set_threshold(ConjugateGradients self, double mg)"""
551  return _IMP_gsl.ConjugateGradients_set_threshold(self, mg)
552 
553 
554  def do_optimize(self, max_steps):
555  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
556  return _IMP_gsl.ConjugateGradients_do_optimize(self, max_steps)
557 
558 
559  def get_version_info(self):
560  """get_version_info(ConjugateGradients self) -> VersionInfo"""
561  return _IMP_gsl.ConjugateGradients_get_version_info(self)
562 
563 
564  def __str__(self):
565  """__str__(ConjugateGradients self) -> std::string"""
566  return _IMP_gsl.ConjugateGradients___str__(self)
567 
568 
569  def __repr__(self):
570  """__repr__(ConjugateGradients self) -> std::string"""
571  return _IMP_gsl.ConjugateGradients___repr__(self)
572 
573 
574  @staticmethod
575  def get_from(o):
576  return _object_cast_to_ConjugateGradients(o)
577 
578 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
579 ConjugateGradients_swigregister(ConjugateGradients)
580 
581 class QuasiNewton(GSLOptimizer):
582  """Proxy of C++ IMP::gsl::QuasiNewton class"""
583  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
584 
585  def __init__(self, m):
586  """__init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton"""
587  this = _IMP_gsl.new_QuasiNewton(m)
588  try:
589  self.this.append(this)
590  except:
591  self.this = this
592 
593  def set_initial_step(self, length):
594  """set_initial_step(QuasiNewton self, double length)"""
595  return _IMP_gsl.QuasiNewton_set_initial_step(self, length)
596 
597 
598  def set_line_step(self, d):
599  """set_line_step(QuasiNewton self, double d)"""
600  return _IMP_gsl.QuasiNewton_set_line_step(self, d)
601 
602 
603  def set_minimum_gradient(self, d):
604  """set_minimum_gradient(QuasiNewton self, double d)"""
605  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, d)
606 
607 
608  def do_optimize(self, max_steps):
609  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
610  return _IMP_gsl.QuasiNewton_do_optimize(self, max_steps)
611 
612 
613  def get_version_info(self):
614  """get_version_info(QuasiNewton self) -> VersionInfo"""
615  return _IMP_gsl.QuasiNewton_get_version_info(self)
616 
617 
618  def __str__(self):
619  """__str__(QuasiNewton self) -> std::string"""
620  return _IMP_gsl.QuasiNewton___str__(self)
621 
622 
623  def __repr__(self):
624  """__repr__(QuasiNewton self) -> std::string"""
625  return _IMP_gsl.QuasiNewton___repr__(self)
626 
627 
628  @staticmethod
629  def get_from(o):
630  return _object_cast_to_QuasiNewton(o)
631 
632 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
633 QuasiNewton_swigregister(QuasiNewton)
634 
635 class Simplex(GSLOptimizer):
636  """Proxy of C++ IMP::gsl::Simplex class"""
637  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
638 
639  def __init__(self, m):
640  """__init__(IMP::gsl::Simplex self, Model m) -> Simplex"""
641  this = _IMP_gsl.new_Simplex(m)
642  try:
643  self.this.append(this)
644  except:
645  self.this = this
646 
647  def set_initial_length(self, length):
648  """set_initial_length(Simplex self, double length)"""
649  return _IMP_gsl.Simplex_set_initial_length(self, length)
650 
651 
652  def set_minimum_size(self, d):
653  """set_minimum_size(Simplex self, double d)"""
654  return _IMP_gsl.Simplex_set_minimum_size(self, d)
655 
656 
657  def do_optimize(self, max_steps):
658  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
659  return _IMP_gsl.Simplex_do_optimize(self, max_steps)
660 
661 
662  def get_version_info(self):
663  """get_version_info(Simplex self) -> VersionInfo"""
664  return _IMP_gsl.Simplex_get_version_info(self)
665 
666 
667  def __str__(self):
668  """__str__(Simplex self) -> std::string"""
669  return _IMP_gsl.Simplex___str__(self)
670 
671 
672  def __repr__(self):
673  """__repr__(Simplex self) -> std::string"""
674  return _IMP_gsl.Simplex___repr__(self)
675 
676 
677  @staticmethod
678  def get_from(o):
679  return _object_cast_to_Simplex(o)
680 
681 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
682 Simplex_swigregister(Simplex)
683 
684 
685 def get_module_version():
686  """get_module_version() -> std::string const"""
687  return _IMP_gsl.get_module_version()
688 
689 def get_example_path(fname):
690  """get_example_path(std::string fname) -> std::string"""
691  return _IMP_gsl.get_example_path(fname)
692 
693 def get_data_path(fname):
694  """get_data_path(std::string fname) -> std::string"""
695  return _IMP_gsl.get_data_path(fname)
696 
697 from . import _version_check
698 _version_check.check_version(get_module_version())
699 __version__ = get_module_version()
700 
701 
702 
Make CGAL functionality available to IMP.
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
virtual void do_destroy()
Definition: Object.h:231
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
Version and module information for Objects.
Definition: VersionInfo.h:29
Base class for optimizers that act on individual attributes.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
std::string get_module_version()
Return the version of this module, as a string.
virtual VersionInfo get_version_info() const
Get information about the module and version of the object.
Definition: Object.h:173
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.