5 from __future__
import print_function
21 bbox = IMP.atom.get_bounding_box(mh)
25 dheader.set_resolution(resolution)
28 dmap.set_particles(ps)
34 print(dmap.get_header().
show(),
"\n")
Strings setup_from_argv(const Strings &argv, std::string description, std::string positional_description, int num_positional)
GenericHierarchies get_leaves(Hierarchy mhd)
Get all the leaves of the bit of hierarchy.
void read_pdb(TextInput input, int model, Hierarchy h)
Class for storing model, its restraints, constraints, and particles.
Class for sampling a density map from particles.
DensityHeader create_density_header(const algebra::BoundingBoxD< 3 > &bb, float spacing)
Create a header from a bounding box in 3D.
Basic utilities for handling cryo-electron microscopy 3D density maps.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
Select all CA ATOM records.
Functionality for loading, creating, manipulating and scoring atomic structures.