16 m.set_log_level(IMP.SILENT)
24 allc.append(d.get_coordinates())
27 for p
in m.get_particle_indexes():
28 pst.set_particle_states(m.get_particle(p), ss)
33 cps = cp.get_close_pairs(m, m.get_particle_indexes())
InteractionGraph get_interaction_graph(ScoringFunctionAdaptor rs, const ParticlesTemp &pst)
Strings setup_from_argv(const Strings &argv, std::string description, std::string positional_description, int num_positional)
Various classes to hold sets of particles.
static XYZR setup_particle(Model *m, ParticleIndex pi)
SubsetGraph get_junction_tree(const InteractionGraph &ig)
Vector3D get_random_vector_in(const Cylinder3D &c)
Generate a random vector in a cylinder with uniform density.
Class for storing model, its restraints, constraints, and particles.
Store a list of ParticleIndexPairs.
Find all nearby pairs by testing all pairs.
void set_log_level(LogLevel l)
Set the current global log level.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
MergeTree get_merge_tree(const SubsetGraph &junction_tree)
Class to handle individual particles of a Model object.
Applies a PairScore to each Pair in a list.
Divide-and-conquer inferential optimization in discrete space.