11 "Example of how to use one of the IMP.display.LogOptimizerStates")
23 g.set_name(
"my particles")
28 r.set_log_level(IMP.VERBOSE)
31 o.set_scoring_function([r])
34 o.add_optimizer_state(log)
Strings setup_from_argv(const Strings &argv, std::string description, std::string positional_description, int num_positional)
Various classes to hold sets of particles.
XYZRs create_xyzr_particles(Model *m, unsigned int num, Float radius, Float box_side=10)
Create a set of particles with random coordinates.
Display an IMP::SingletonContainer of IMP::core::XYZR particles as balls.
Move continuous particle variables by perturbing them within a ball.
Class for storing model, its restraints, constraints, and particles.
Store a list of ParticleIndexes.
Basic functionality that is expected to be used by a wide variety of IMP users.
Prevent a set of particles and rigid bodies from inter-penetrating.
Write a CGO file with the geometry.
Output IMP model data in various file formats.