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IMP Reference Guide  2.18.0
The Integrative Modeling Platform
version 2.18.0
bayesianem/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.7
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 # This wrapper is part of IMP,
9 # Copyright 2007-2022 IMP Inventors. All rights reserved.
10 
11 from __future__ import print_function, division, absolute_import
12 
13 
14 
15 
16 
17 from sys import version_info
18 if version_info >= (2, 6, 0):
19  def swig_import_helper():
20  from os.path import dirname
21  import imp
22  fp = None
23  try:
24  fp, pathname, description = imp.find_module('_IMP_bayesianem', [dirname(__file__)])
25  except ImportError:
26  import _IMP_bayesianem
27  return _IMP_bayesianem
28  if fp is not None:
29  try:
30  _mod = imp.load_module('_IMP_bayesianem', fp, pathname, description)
31  finally:
32  fp.close()
33  return _mod
34  _IMP_bayesianem = swig_import_helper()
35  del swig_import_helper
36 else:
37  import _IMP_bayesianem
38 del version_info
39 try:
40  _swig_property = property
41 except NameError:
42  pass # Python < 2.2 doesn't have 'property'.
43 
44 
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46  if (name == "thisown"):
47  return self.this.own(value)
48  if (name == "this"):
49  if type(value).__name__ == 'SwigPyObject':
50  self.__dict__[name] = value
51  return
52  method = class_type.__swig_setmethods__.get(name, None)
53  if method:
54  return method(self, value)
55  if (not static):
56  object.__setattr__(self, name, value)
57  else:
58  raise AttributeError("You cannot add attributes to %s" % self)
59 
60 
61 def _swig_setattr(self, class_type, name, value):
62  return _swig_setattr_nondynamic(self, class_type, name, value, 0)
63 
64 
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66  if (name == "thisown"):
67  return self.this.own()
68  method = class_type.__swig_getmethods__.get(name, None)
69  if method:
70  return method(self)
71  if (not static):
72  return object.__getattr__(self, name)
73  else:
74  raise AttributeError(name)
75 
76 def _swig_getattr(self, class_type, name):
77  return _swig_getattr_nondynamic(self, class_type, name, 0)
78 
79 
80 def _swig_repr(self):
81  try:
82  strthis = "proxy of " + self.this.__repr__()
83  except:
84  strthis = ""
85  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
86 
87 try:
88  _object = object
89  _newclass = 1
90 except AttributeError:
91  class _object:
92  pass
93  _newclass = 0
94 
95 
96 
97 def _swig_setattr_nondynamic_method(set):
98  def set_attr(self, name, value):
99  if (name == "thisown"):
100  return self.this.own(value)
101  if hasattr(self, name) or (name == "this"):
102  set(self, name, value)
103  else:
104  raise AttributeError("You cannot add attributes to %s" % self)
105  return set_attr
106 
107 
108 try:
109  import weakref
110  weakref_proxy = weakref.proxy
111 except:
112  weakref_proxy = lambda x: x
113 
114 
115 class IMP_BAYESIANEM_SwigPyIterator(object):
116  """Proxy of C++ swig::IMP_BAYESIANEM_SwigPyIterator class"""
117  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
118 
119  def __init__(self, *args, **kwargs):
120  raise AttributeError("No constructor defined - class is abstract")
121  __repr__ = _swig_repr
122  __swig_destroy__ = _IMP_bayesianem.delete_IMP_BAYESIANEM_SwigPyIterator
123  __del__ = lambda self: None
124 
125  def value(self):
126  """value(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
127  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_value(self)
128 
129 
130  def incr(self, n=1):
131  """
132  incr(IMP_BAYESIANEM_SwigPyIterator self, size_t n=1) -> IMP_BAYESIANEM_SwigPyIterator
133  incr(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator
134  """
135  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_incr(self, n)
136 
137 
138  def decr(self, n=1):
139  """
140  decr(IMP_BAYESIANEM_SwigPyIterator self, size_t n=1) -> IMP_BAYESIANEM_SwigPyIterator
141  decr(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator
142  """
143  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_decr(self, n)
144 
145 
146  def distance(self, x):
147  """distance(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> ptrdiff_t"""
148  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_distance(self, x)
149 
150 
151  def equal(self, x):
152  """equal(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
153  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_equal(self, x)
154 
155 
156  def copy(self):
157  """copy(IMP_BAYESIANEM_SwigPyIterator self) -> IMP_BAYESIANEM_SwigPyIterator"""
158  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_copy(self)
159 
160 
161  def next(self):
162  """next(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
163  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_next(self)
164 
165 
166  def __next__(self):
167  """__next__(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
168  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___next__(self)
169 
170 
171  def previous(self):
172  """previous(IMP_BAYESIANEM_SwigPyIterator self) -> PyObject *"""
173  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_previous(self)
174 
175 
176  def advance(self, n):
177  """advance(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
178  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_advance(self, n)
179 
180 
181  def __eq__(self, x):
182  """__eq__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
183  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___eq__(self, x)
184 
185 
186  def __ne__(self, x):
187  """__ne__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> bool"""
188  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___ne__(self, x)
189 
190 
191  def __iadd__(self, n):
192  """__iadd__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
193  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___iadd__(self, n)
194 
195 
196  def __isub__(self, n):
197  """__isub__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
198  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___isub__(self, n)
199 
200 
201  def __add__(self, n):
202  """__add__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator"""
203  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___add__(self, n)
204 
205 
206  def __sub__(self, *args):
207  """
208  __sub__(IMP_BAYESIANEM_SwigPyIterator self, ptrdiff_t n) -> IMP_BAYESIANEM_SwigPyIterator
209  __sub__(IMP_BAYESIANEM_SwigPyIterator self, IMP_BAYESIANEM_SwigPyIterator x) -> ptrdiff_t
210  """
211  return _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator___sub__(self, *args)
212 
213  def __iter__(self):
214  return self
215 IMP_BAYESIANEM_SwigPyIterator_swigregister = _IMP_bayesianem.IMP_BAYESIANEM_SwigPyIterator_swigregister
216 IMP_BAYESIANEM_SwigPyIterator_swigregister(IMP_BAYESIANEM_SwigPyIterator)
217 
218 
219 _value_types=[]
220 _object_types=[]
221 _raii_types=[]
222 _plural_types=[]
223 
224 
225 _IMP_bayesianem.IMP_DEBUG_swigconstant(_IMP_bayesianem)
226 IMP_DEBUG = _IMP_bayesianem.IMP_DEBUG
227 
228 _IMP_bayesianem.IMP_RELEASE_swigconstant(_IMP_bayesianem)
229 IMP_RELEASE = _IMP_bayesianem.IMP_RELEASE
230 
231 _IMP_bayesianem.IMP_SILENT_swigconstant(_IMP_bayesianem)
232 IMP_SILENT = _IMP_bayesianem.IMP_SILENT
233 
234 _IMP_bayesianem.IMP_PROGRESS_swigconstant(_IMP_bayesianem)
235 IMP_PROGRESS = _IMP_bayesianem.IMP_PROGRESS
236 
237 _IMP_bayesianem.IMP_TERSE_swigconstant(_IMP_bayesianem)
238 IMP_TERSE = _IMP_bayesianem.IMP_TERSE
239 
240 _IMP_bayesianem.IMP_VERBOSE_swigconstant(_IMP_bayesianem)
241 IMP_VERBOSE = _IMP_bayesianem.IMP_VERBOSE
242 
243 _IMP_bayesianem.IMP_MEMORY_swigconstant(_IMP_bayesianem)
244 IMP_MEMORY = _IMP_bayesianem.IMP_MEMORY
245 
246 _IMP_bayesianem.IMP_NONE_swigconstant(_IMP_bayesianem)
247 IMP_NONE = _IMP_bayesianem.IMP_NONE
248 
249 _IMP_bayesianem.IMP_USAGE_swigconstant(_IMP_bayesianem)
250 IMP_USAGE = _IMP_bayesianem.IMP_USAGE
251 
252 _IMP_bayesianem.IMP_INTERNAL_swigconstant(_IMP_bayesianem)
253 IMP_INTERNAL = _IMP_bayesianem.IMP_INTERNAL
254 
255 _IMP_bayesianem.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_bayesianem)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_bayesianem.IMP_KERNEL_HAS_LOG4CXX
257 
258 _IMP_bayesianem.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_bayesianem)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_bayesianem.IMP_COMPILER_HAS_DEBUG_VECTOR
260 
261 _IMP_bayesianem.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_bayesianem)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_bayesianem.IMP_COMPILER_HAS_RANDOM_SHUFFLE
263 
264 _IMP_bayesianem.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_bayesianem)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_bayesianem.IMP_COMPILER_HAS_THREE_WAY
266 
267 _IMP_bayesianem.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_KERNEL_HAS_BOOST_RANDOM
269 
270 _IMP_bayesianem.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_bayesianem)
271 IMP_KERNEL_HAS_NUMPY = _IMP_bayesianem.IMP_KERNEL_HAS_NUMPY
272 
273 _IMP_bayesianem.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_bayesianem)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_bayesianem.IMP_KERNEL_HAS_GPERFTOOLS
275 
276 _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_bayesianem)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
278 
279 _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_bayesianem)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_bayesianem.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
281 
282 _IMP_bayesianem.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_bayesianem.IMPKERNEL_SHOW_WARNINGS
284 
285 import sys
286 class _DirectorObjects(object):
287  """@internal Simple class to keep references to director objects
288  to prevent premature deletion."""
289  def __init__(self):
290  self._objects = []
291  def register(self, obj):
292  """Take a reference to a director object; will only work for
293  refcounted C++ classes"""
294  if hasattr(obj, 'get_ref_count'):
295  self._objects.append(obj)
296  def cleanup(self):
297  """Only drop our reference and allow cleanup by Python if no other
298  Python references exist (we hold 3 references: one in self._objects,
299  one in x, and one in the argument list for getrefcount) *and* no
300  other C++ references exist (the Python object always holds one)"""
301  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
302  or x.get_ref_count() > 1]
303 # Do in two steps so the references are kept until the end of the
304 # function (deleting references may trigger a fresh call to this method)
305  self._objects = objs
306  def get_object_count(self):
307  """Get number of director objects (useful for testing only)"""
308  return len(self._objects)
309 _director_objects = _DirectorObjects()
310 
311 class _ostream(object):
312  """Proxy of C++ std::ostream class"""
313  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
314 
315  def __init__(self, *args, **kwargs):
316  raise AttributeError("No constructor defined")
317  __repr__ = _swig_repr
318 
319  def write(self, osa_buf):
320  """write(_ostream self, char const * osa_buf)"""
321  return _IMP_bayesianem._ostream_write(self, osa_buf)
322 
323 _ostream_swigregister = _IMP_bayesianem._ostream_swigregister
324 _ostream_swigregister(_ostream)
325 
326 
327 _IMP_bayesianem.IMP_HAS_NOEXCEPT_swigconstant(_IMP_bayesianem)
328 IMP_HAS_NOEXCEPT = _IMP_bayesianem.IMP_HAS_NOEXCEPT
329 
330 _IMP_bayesianem.IMP_C_OPEN_BINARY_swigconstant(_IMP_bayesianem)
331 IMP_C_OPEN_BINARY = _IMP_bayesianem.IMP_C_OPEN_BINARY
332 import IMP
333 
334 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_FILESYSTEM
336 
337 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
339 
340 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_RANDOM
342 
343 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
344 IMP_CGAL_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SERIALIZATION
345 
346 _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
347 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CGAL_HAS_BOOST_SYSTEM
348 
349 _IMP_bayesianem.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_bayesianem)
350 IMP_CGAL_HAS_NUMPY = _IMP_bayesianem.IMP_CGAL_HAS_NUMPY
351 
352 _IMP_bayesianem.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
353 IMPCGAL_SHOW_WARNINGS = _IMP_bayesianem.IMPCGAL_SHOW_WARNINGS
354 import IMP.cgal
355 
356 _IMP_bayesianem.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
357 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ALGEBRA_HAS_IMP_CGAL
358 
359 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
360 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
361 
362 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
363 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
364 
365 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
366 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_RANDOM
367 
368 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
369 IMP_ALGEBRA_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SERIALIZATION
370 
371 _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
372 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ALGEBRA_HAS_BOOST_SYSTEM
373 
374 _IMP_bayesianem.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_bayesianem)
375 IMP_ALGEBRA_HAS_CGAL = _IMP_bayesianem.IMP_ALGEBRA_HAS_CGAL
376 
377 _IMP_bayesianem.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_bayesianem)
378 IMP_ALGEBRA_HAS_NUMPY = _IMP_bayesianem.IMP_ALGEBRA_HAS_NUMPY
379 
380 _IMP_bayesianem.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_bayesianem)
381 IMP_ALGEBRA_HAS_ANN = _IMP_bayesianem.IMP_ALGEBRA_HAS_ANN
382 
383 _IMP_bayesianem.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
384 IMPALGEBRA_SHOW_WARNINGS = _IMP_bayesianem.IMPALGEBRA_SHOW_WARNINGS
385 import IMP.algebra
386 
387 _IMP_bayesianem.IMP_DISPLAY_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
388 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_bayesianem.IMP_DISPLAY_HAS_IMP_CGAL
389 
390 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
391 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
392 
393 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
394 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
395 
396 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
397 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_RANDOM
398 
399 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
400 IMP_DISPLAY_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SERIALIZATION
401 
402 _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
403 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_DISPLAY_HAS_BOOST_SYSTEM
404 
405 _IMP_bayesianem.IMP_DISPLAY_HAS_CGAL_swigconstant(_IMP_bayesianem)
406 IMP_DISPLAY_HAS_CGAL = _IMP_bayesianem.IMP_DISPLAY_HAS_CGAL
407 
408 _IMP_bayesianem.IMP_DISPLAY_HAS_NUMPY_swigconstant(_IMP_bayesianem)
409 IMP_DISPLAY_HAS_NUMPY = _IMP_bayesianem.IMP_DISPLAY_HAS_NUMPY
410 
411 _IMP_bayesianem.IMPDISPLAY_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
412 IMPDISPLAY_SHOW_WARNINGS = _IMP_bayesianem.IMPDISPLAY_SHOW_WARNINGS
413 import IMP.display
414 
415 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
416 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
417 
418 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
419 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
420 
421 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
422 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
423 
424 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
425 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
426 
427 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
428 IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SERIALIZATION
429 
430 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
431 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
432 
433 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_bayesianem)
434 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_CGAL
435 
436 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_bayesianem)
437 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_HDF5
438 
439 _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_bayesianem)
440 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_bayesianem.IMP_SCORE_FUNCTOR_HAS_NUMPY
441 
442 _IMP_bayesianem.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
443 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_bayesianem.IMPSCOREFUNCTOR_SHOW_WARNINGS
444 import IMP.score_functor
445 
446 _IMP_bayesianem.IMP_STATISTICS_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
447 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_bayesianem.IMP_STATISTICS_HAS_IMP_CGAL
448 
449 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
450 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
451 
452 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
453 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
454 
455 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
456 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_RANDOM
457 
458 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
459 IMP_STATISTICS_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SERIALIZATION
460 
461 _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
462 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_STATISTICS_HAS_BOOST_SYSTEM
463 
464 _IMP_bayesianem.IMP_STATISTICS_HAS_CGAL_swigconstant(_IMP_bayesianem)
465 IMP_STATISTICS_HAS_CGAL = _IMP_bayesianem.IMP_STATISTICS_HAS_CGAL
466 
467 _IMP_bayesianem.IMP_STATISTICS_HAS_NUMPY_swigconstant(_IMP_bayesianem)
468 IMP_STATISTICS_HAS_NUMPY = _IMP_bayesianem.IMP_STATISTICS_HAS_NUMPY
469 
470 _IMP_bayesianem.IMPSTATISTICS_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
471 IMPSTATISTICS_SHOW_WARNINGS = _IMP_bayesianem.IMPSTATISTICS_SHOW_WARNINGS
472 import IMP.statistics
473 
474 _IMP_bayesianem.IMP_CORE_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
475 IMP_CORE_HAS_IMP_CGAL = _IMP_bayesianem.IMP_CORE_HAS_IMP_CGAL
476 
477 _IMP_bayesianem.IMP_CORE_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
478 IMP_CORE_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_CORE_HAS_IMP_KERNEL
479 
480 _IMP_bayesianem.IMP_CORE_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
481 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_FILESYSTEM
482 
483 _IMP_bayesianem.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
484 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
485 
486 _IMP_bayesianem.IMP_CORE_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
487 IMP_CORE_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_RANDOM
488 
489 _IMP_bayesianem.IMP_CORE_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
490 IMP_CORE_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_CORE_HAS_BOOST_SERIALIZATION
491 
492 _IMP_bayesianem.IMP_CORE_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
493 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CORE_HAS_BOOST_SYSTEM
494 
495 _IMP_bayesianem.IMP_CORE_HAS_CGAL_swigconstant(_IMP_bayesianem)
496 IMP_CORE_HAS_CGAL = _IMP_bayesianem.IMP_CORE_HAS_CGAL
497 
498 _IMP_bayesianem.IMP_CORE_HAS_HDF5_swigconstant(_IMP_bayesianem)
499 IMP_CORE_HAS_HDF5 = _IMP_bayesianem.IMP_CORE_HAS_HDF5
500 
501 _IMP_bayesianem.IMP_CORE_HAS_NUMPY_swigconstant(_IMP_bayesianem)
502 IMP_CORE_HAS_NUMPY = _IMP_bayesianem.IMP_CORE_HAS_NUMPY
503 
504 _IMP_bayesianem.IMPCORE_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
505 IMPCORE_SHOW_WARNINGS = _IMP_bayesianem.IMPCORE_SHOW_WARNINGS
506 import IMP.core
507 
508 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_ALGEBRA_swigconstant(_IMP_bayesianem)
509 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_ALGEBRA
510 
511 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
512 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_CGAL
513 
514 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
515 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_DISPLAY
516 
517 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
518 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_KERNEL
519 
520 _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
521 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
522 
523 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
524 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
525 
526 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
527 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
528 
529 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
530 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_RANDOM
531 
532 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
533 IMP_CONTAINER_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SERIALIZATION
534 
535 _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
536 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_CONTAINER_HAS_BOOST_SYSTEM
537 
538 _IMP_bayesianem.IMP_CONTAINER_HAS_CGAL_swigconstant(_IMP_bayesianem)
539 IMP_CONTAINER_HAS_CGAL = _IMP_bayesianem.IMP_CONTAINER_HAS_CGAL
540 
541 _IMP_bayesianem.IMP_CONTAINER_HAS_HDF5_swigconstant(_IMP_bayesianem)
542 IMP_CONTAINER_HAS_HDF5 = _IMP_bayesianem.IMP_CONTAINER_HAS_HDF5
543 
544 _IMP_bayesianem.IMP_CONTAINER_HAS_NUMPY_swigconstant(_IMP_bayesianem)
545 IMP_CONTAINER_HAS_NUMPY = _IMP_bayesianem.IMP_CONTAINER_HAS_NUMPY
546 
547 _IMP_bayesianem.IMP_CONTAINER_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
548 IMP_CONTAINER_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_CONTAINER_HAS_PYTHON_IHM
549 
550 _IMP_bayesianem.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP_swigconstant(_IMP_bayesianem)
551 IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP = _IMP_bayesianem.IMP_CONTAINER_HAS_GOOGLE_DENSE_HASH_MAP
552 
553 _IMP_bayesianem.IMP_CONTAINER_HAS_ROBIN_MAP_swigconstant(_IMP_bayesianem)
554 IMP_CONTAINER_HAS_ROBIN_MAP = _IMP_bayesianem.IMP_CONTAINER_HAS_ROBIN_MAP
555 
556 _IMP_bayesianem.IMPCONTAINER_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
557 IMPCONTAINER_SHOW_WARNINGS = _IMP_bayesianem.IMPCONTAINER_SHOW_WARNINGS
558 import IMP.container
559 
560 _IMP_bayesianem.IMP_ATOM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
561 IMP_ATOM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ATOM_HAS_IMP_CGAL
562 
563 _IMP_bayesianem.IMP_ATOM_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
564 IMP_ATOM_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_ATOM_HAS_IMP_KERNEL
565 
566 _IMP_bayesianem.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
567 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
568 
569 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
570 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
571 
572 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
573 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_RANDOM
574 
575 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
576 IMP_ATOM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_REGEX
577 
578 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
579 IMP_ATOM_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SERIALIZATION
580 
581 _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
582 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ATOM_HAS_BOOST_SYSTEM
583 
584 _IMP_bayesianem.IMP_ATOM_HAS_CGAL_swigconstant(_IMP_bayesianem)
585 IMP_ATOM_HAS_CGAL = _IMP_bayesianem.IMP_ATOM_HAS_CGAL
586 
587 _IMP_bayesianem.IMP_ATOM_HAS_HDF5_swigconstant(_IMP_bayesianem)
588 IMP_ATOM_HAS_HDF5 = _IMP_bayesianem.IMP_ATOM_HAS_HDF5
589 
590 _IMP_bayesianem.IMP_ATOM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
591 IMP_ATOM_HAS_NUMPY = _IMP_bayesianem.IMP_ATOM_HAS_NUMPY
592 
593 _IMP_bayesianem.IMP_ATOM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
594 IMP_ATOM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_ATOM_HAS_PYTHON_IHM
595 
596 _IMP_bayesianem.IMPATOM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
597 IMPATOM_SHOW_WARNINGS = _IMP_bayesianem.IMPATOM_SHOW_WARNINGS
598 
599 _IMP_bayesianem.IMP_ATOM_TYPE_INDEX_swigconstant(_IMP_bayesianem)
600 IMP_ATOM_TYPE_INDEX = _IMP_bayesianem.IMP_ATOM_TYPE_INDEX
601 
602 _IMP_bayesianem.IMP_RESIDUE_TYPE_INDEX_swigconstant(_IMP_bayesianem)
603 IMP_RESIDUE_TYPE_INDEX = _IMP_bayesianem.IMP_RESIDUE_TYPE_INDEX
604 
605 _IMP_bayesianem.IMP_HIERARCHY_TYPE_INDEX_swigconstant(_IMP_bayesianem)
606 IMP_HIERARCHY_TYPE_INDEX = _IMP_bayesianem.IMP_HIERARCHY_TYPE_INDEX
607 
608 _IMP_bayesianem.IMP_CHAIN_TYPE_INDEX_swigconstant(_IMP_bayesianem)
609 IMP_CHAIN_TYPE_INDEX = _IMP_bayesianem.IMP_CHAIN_TYPE_INDEX
610 import IMP.atom
611 
612 _IMP_bayesianem.IMP_EM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
613 IMP_EM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_EM_HAS_IMP_CGAL
614 
615 _IMP_bayesianem.IMP_EM_HAS_IMP_CONTAINER_swigconstant(_IMP_bayesianem)
616 IMP_EM_HAS_IMP_CONTAINER = _IMP_bayesianem.IMP_EM_HAS_IMP_CONTAINER
617 
618 _IMP_bayesianem.IMP_EM_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
619 IMP_EM_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_EM_HAS_IMP_DISPLAY
620 
621 _IMP_bayesianem.IMP_EM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
622 IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_EM_HAS_IMP_SCORE_FUNCTOR
623 
624 _IMP_bayesianem.IMP_EM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
625 IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_EM_HAS_BOOST_FILESYSTEM
626 
627 _IMP_bayesianem.IMP_EM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
628 IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
629 
630 _IMP_bayesianem.IMP_EM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
631 IMP_EM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_EM_HAS_BOOST_RANDOM
632 
633 _IMP_bayesianem.IMP_EM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
634 IMP_EM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_EM_HAS_BOOST_REGEX
635 
636 _IMP_bayesianem.IMP_EM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
637 IMP_EM_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_EM_HAS_BOOST_SERIALIZATION
638 
639 _IMP_bayesianem.IMP_EM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
640 IMP_EM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_EM_HAS_BOOST_SYSTEM
641 
642 _IMP_bayesianem.IMP_EM_HAS_CGAL_swigconstant(_IMP_bayesianem)
643 IMP_EM_HAS_CGAL = _IMP_bayesianem.IMP_EM_HAS_CGAL
644 
645 _IMP_bayesianem.IMP_EM_HAS_HDF5_swigconstant(_IMP_bayesianem)
646 IMP_EM_HAS_HDF5 = _IMP_bayesianem.IMP_EM_HAS_HDF5
647 
648 _IMP_bayesianem.IMP_EM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
649 IMP_EM_HAS_NUMPY = _IMP_bayesianem.IMP_EM_HAS_NUMPY
650 
651 _IMP_bayesianem.IMP_EM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
652 IMP_EM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_EM_HAS_PYTHON_IHM
653 
654 _IMP_bayesianem.IMPEM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
655 IMPEM_SHOW_WARNINGS = _IMP_bayesianem.IMPEM_SHOW_WARNINGS
656 import IMP.em
657 
658 _IMP_bayesianem.IMP_SAXS_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
659 IMP_SAXS_HAS_IMP_CGAL = _IMP_bayesianem.IMP_SAXS_HAS_IMP_CGAL
660 
661 _IMP_bayesianem.IMP_SAXS_HAS_IMP_CONTAINER_swigconstant(_IMP_bayesianem)
662 IMP_SAXS_HAS_IMP_CONTAINER = _IMP_bayesianem.IMP_SAXS_HAS_IMP_CONTAINER
663 
664 _IMP_bayesianem.IMP_SAXS_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
665 IMP_SAXS_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_SAXS_HAS_IMP_DISPLAY
666 
667 _IMP_bayesianem.IMP_SAXS_HAS_IMP_KERNEL_swigconstant(_IMP_bayesianem)
668 IMP_SAXS_HAS_IMP_KERNEL = _IMP_bayesianem.IMP_SAXS_HAS_IMP_KERNEL
669 
670 _IMP_bayesianem.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
671 IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
672 
673 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
674 IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_FILESYSTEM
675 
676 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
677 IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
678 
679 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
680 IMP_SAXS_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_RANDOM
681 
682 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
683 IMP_SAXS_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_REGEX
684 
685 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
686 IMP_SAXS_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SERIALIZATION
687 
688 _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
689 IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_SAXS_HAS_BOOST_SYSTEM
690 
691 _IMP_bayesianem.IMP_SAXS_HAS_CGAL_swigconstant(_IMP_bayesianem)
692 IMP_SAXS_HAS_CGAL = _IMP_bayesianem.IMP_SAXS_HAS_CGAL
693 
694 _IMP_bayesianem.IMP_SAXS_HAS_HDF5_swigconstant(_IMP_bayesianem)
695 IMP_SAXS_HAS_HDF5 = _IMP_bayesianem.IMP_SAXS_HAS_HDF5
696 
697 _IMP_bayesianem.IMP_SAXS_HAS_NUMPY_swigconstant(_IMP_bayesianem)
698 IMP_SAXS_HAS_NUMPY = _IMP_bayesianem.IMP_SAXS_HAS_NUMPY
699 
700 _IMP_bayesianem.IMP_SAXS_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
701 IMP_SAXS_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_SAXS_HAS_PYTHON_IHM
702 
703 _IMP_bayesianem.IMPSAXS_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
704 IMPSAXS_SHOW_WARNINGS = _IMP_bayesianem.IMPSAXS_SHOW_WARNINGS
705 import IMP.saxs
706 
707 _IMP_bayesianem.IMP_ISD_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
708 IMP_ISD_HAS_IMP_CGAL = _IMP_bayesianem.IMP_ISD_HAS_IMP_CGAL
709 
710 _IMP_bayesianem.IMP_ISD_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
711 IMP_ISD_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_ISD_HAS_IMP_DISPLAY
712 
713 _IMP_bayesianem.IMP_ISD_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
714 IMP_ISD_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_ISD_HAS_IMP_SCORE_FUNCTOR
715 
716 _IMP_bayesianem.IMP_ISD_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
717 IMP_ISD_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_FILESYSTEM
718 
719 _IMP_bayesianem.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
720 IMP_ISD_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_ISD_HAS_BOOST_PROGRAMOPTIONS
721 
722 _IMP_bayesianem.IMP_ISD_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
723 IMP_ISD_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_RANDOM
724 
725 _IMP_bayesianem.IMP_ISD_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
726 IMP_ISD_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_ISD_HAS_BOOST_REGEX
727 
728 _IMP_bayesianem.IMP_ISD_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
729 IMP_ISD_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_ISD_HAS_BOOST_SERIALIZATION
730 
731 _IMP_bayesianem.IMP_ISD_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
732 IMP_ISD_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_ISD_HAS_BOOST_SYSTEM
733 
734 _IMP_bayesianem.IMP_ISD_HAS_CGAL_swigconstant(_IMP_bayesianem)
735 IMP_ISD_HAS_CGAL = _IMP_bayesianem.IMP_ISD_HAS_CGAL
736 
737 _IMP_bayesianem.IMP_ISD_HAS_HDF5_swigconstant(_IMP_bayesianem)
738 IMP_ISD_HAS_HDF5 = _IMP_bayesianem.IMP_ISD_HAS_HDF5
739 
740 _IMP_bayesianem.IMP_ISD_HAS_NUMPY_swigconstant(_IMP_bayesianem)
741 IMP_ISD_HAS_NUMPY = _IMP_bayesianem.IMP_ISD_HAS_NUMPY
742 
743 _IMP_bayesianem.IMP_ISD_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
744 IMP_ISD_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_ISD_HAS_PYTHON_IHM
745 
746 _IMP_bayesianem.IMPISD_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
747 IMPISD_SHOW_WARNINGS = _IMP_bayesianem.IMPISD_SHOW_WARNINGS
748 import IMP.isd
749 
750 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_CGAL_swigconstant(_IMP_bayesianem)
751 IMP_BAYESIANEM_HAS_IMP_CGAL = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_CGAL
752 
753 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_DISPLAY_swigconstant(_IMP_bayesianem)
754 IMP_BAYESIANEM_HAS_IMP_DISPLAY = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_DISPLAY
755 
756 _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR_swigconstant(_IMP_bayesianem)
757 IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR = _IMP_bayesianem.IMP_BAYESIANEM_HAS_IMP_SCORE_FUNCTOR
758 
759 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_bayesianem)
760 IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_FILESYSTEM
761 
762 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_bayesianem)
763 IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_PROGRAMOPTIONS
764 
765 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_RANDOM_swigconstant(_IMP_bayesianem)
766 IMP_BAYESIANEM_HAS_BOOST_RANDOM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_RANDOM
767 
768 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_REGEX_swigconstant(_IMP_bayesianem)
769 IMP_BAYESIANEM_HAS_BOOST_REGEX = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_REGEX
770 
771 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SERIALIZATION_swigconstant(_IMP_bayesianem)
772 IMP_BAYESIANEM_HAS_BOOST_SERIALIZATION = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SERIALIZATION
773 
774 _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SYSTEM_swigconstant(_IMP_bayesianem)
775 IMP_BAYESIANEM_HAS_BOOST_SYSTEM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_BOOST_SYSTEM
776 
777 _IMP_bayesianem.IMP_BAYESIANEM_HAS_CGAL_swigconstant(_IMP_bayesianem)
778 IMP_BAYESIANEM_HAS_CGAL = _IMP_bayesianem.IMP_BAYESIANEM_HAS_CGAL
779 
780 _IMP_bayesianem.IMP_BAYESIANEM_HAS_HDF5_swigconstant(_IMP_bayesianem)
781 IMP_BAYESIANEM_HAS_HDF5 = _IMP_bayesianem.IMP_BAYESIANEM_HAS_HDF5
782 
783 _IMP_bayesianem.IMP_BAYESIANEM_HAS_NUMPY_swigconstant(_IMP_bayesianem)
784 IMP_BAYESIANEM_HAS_NUMPY = _IMP_bayesianem.IMP_BAYESIANEM_HAS_NUMPY
785 
786 _IMP_bayesianem.IMP_BAYESIANEM_HAS_PYTHON_IHM_swigconstant(_IMP_bayesianem)
787 IMP_BAYESIANEM_HAS_PYTHON_IHM = _IMP_bayesianem.IMP_BAYESIANEM_HAS_PYTHON_IHM
788 
789 _IMP_bayesianem.IMPBAYESIANEM_SHOW_WARNINGS_swigconstant(_IMP_bayesianem)
790 IMPBAYESIANEM_SHOW_WARNINGS = _IMP_bayesianem.IMPBAYESIANEM_SHOW_WARNINGS
791 
792 _object_types.append("GaussianEMRestraint")
793 
794 class GaussianEMRestraint(IMP.Restraint):
795  """Proxy of C++ IMP::bayesianem::GaussianEMRestraint class"""
796  thisown = _swig_property(lambda x: x.this.own(), lambda x, v: x.this.own(v), doc='The membership flag')
797 
798  def __init__(self, *args):
799  """
800  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True, bool backbone_slope=False, std::string name) -> GaussianEMRestraint
801  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True, bool backbone_slope=False) -> GaussianEMRestraint
802  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope, bool update_model=True) -> GaussianEMRestraint
803  __init__(IMP::bayesianem::GaussianEMRestraint self, Model mdl, IMP::ParticleIndexes model_ps, IMP::ParticleIndexes density_ps, ParticleIndex global_sigma, IMP::Float model_cutoff_dist, IMP::Float density_cutoff_dist, IMP::Float slope) -> GaussianEMRestraint
804  """
805  this = _IMP_bayesianem.new_GaussianEMRestraint(*args)
806  try:
807  self.this.append(this)
808  except:
809  self.this = this
810 
811  def get_probability(self):
812  """get_probability(GaussianEMRestraint self) -> double"""
813  return _IMP_bayesianem.GaussianEMRestraint_get_probability(self)
814 
815 
816  def set_density_filename(self, density_fn):
817  """set_density_filename(GaussianEMRestraint self, std::string density_fn)"""
818  return _IMP_bayesianem.GaussianEMRestraint_set_density_filename(self, density_fn)
819 
820 
821  def compute_initial_scores(self):
822  """compute_initial_scores(GaussianEMRestraint self)"""
823  return _IMP_bayesianem.GaussianEMRestraint_compute_initial_scores(self)
824 
825 
826  def get_indexes(self):
827  """get_indexes(GaussianEMRestraint self) -> IMP::ParticleIndexes const"""
828  return _IMP_bayesianem.GaussianEMRestraint_get_indexes(self)
829 
830 
831  def get_log2(self):
832  """get_log2(GaussianEMRestraint self) -> IMP::Floats const"""
833  return _IMP_bayesianem.GaussianEMRestraint_get_log2(self)
834 
835 
836  def debug(self):
837  """debug(GaussianEMRestraint self)"""
838  return _IMP_bayesianem.GaussianEMRestraint_debug(self)
839 
840 
841  def set_slope(self, s):
842  """set_slope(GaussianEMRestraint self, IMP::Float s)"""
843  return _IMP_bayesianem.GaussianEMRestraint_set_slope(self, s)
844 
845 
846  def get_slope(self):
847  """get_slope(GaussianEMRestraint self) -> IMP::Float"""
848  return _IMP_bayesianem.GaussianEMRestraint_get_slope(self)
849 
850 
851  def do_get_inputs(self):
852  """do_get_inputs(GaussianEMRestraint self) -> IMP::ModelObjectsTemp"""
853  return _IMP_bayesianem.GaussianEMRestraint_do_get_inputs(self)
854 
855 
856  def show(self, out):
857  """show(GaussianEMRestraint self, _ostream out)"""
858  return _IMP_bayesianem.GaussianEMRestraint_show(self, out)
859 
860 
861  def get_version_info(self):
862  """get_version_info(GaussianEMRestraint self) -> VersionInfo"""
863  return _IMP_bayesianem.GaussianEMRestraint_get_version_info(self)
864 
865 
866  def __str__(self):
867  """__str__(GaussianEMRestraint self) -> std::string"""
868  return _IMP_bayesianem.GaussianEMRestraint___str__(self)
869 
870 
871  def __repr__(self):
872  """__repr__(GaussianEMRestraint self) -> std::string"""
873  return _IMP_bayesianem.GaussianEMRestraint___repr__(self)
874 
875 
876  @staticmethod
877  def get_from(o):
878  return _object_cast_to_GaussianEMRestraint(o)
879 
880 GaussianEMRestraint_swigregister = _IMP_bayesianem.GaussianEMRestraint_swigregister
881 GaussianEMRestraint_swigregister(GaussianEMRestraint)
882 
883 
884 def get_rmsd_excluding_higher_than(m1, m2, t):
885  """get_rmsd_excluding_higher_than(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const t) -> double"""
886  return _IMP_bayesianem.get_rmsd_excluding_higher_than(m1, m2, t)
887 
888 def get_percentage_closer_than(m1, m2, t):
889  """get_percentage_closer_than(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const t) -> double"""
890  return _IMP_bayesianem.get_percentage_closer_than(m1, m2, t)
891 
892 def get_transformation_aligning_first_to_second(s1, s2):
893  """get_transformation_aligning_first_to_second(Selection s1, Selection s2) -> Transformation3D"""
894  return _IMP_bayesianem.get_transformation_aligning_first_to_second(s1, s2)
895 
896 def get_rmsd_of_best_population(*args):
897  """
898  get_rmsd_of_best_population(IMP::core::XYZs const & m1, IMP::core::XYZs const & m2, double const percentage) -> double
899  get_rmsd_of_best_population(Selection s1, Selection s2, double const percentage) -> double
900  get_rmsd_of_best_population(IMP::algebra::Vector3Ds const & m1, IMP::algebra::Vector3Ds const & m2, double const percentage) -> double
901  """
902  return _IMP_bayesianem.get_rmsd_of_best_population(*args)
903 
904 def gem_score_cc(model_ps, density_ps):
905  """gem_score_cc(IMP::Particles model_ps, IMP::Particles density_ps) -> double"""
906  return _IMP_bayesianem.gem_score_cc(model_ps, density_ps)
907 
908 def get_grid(arg1):
909  """get_grid(DensityMap arg1) -> DenseDoubleGrid3D"""
910  return _IMP_bayesianem.get_grid(arg1)
911 
912 def get_masked_map(gmm, weights, densitymap, threshold):
913  """get_masked_map(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap densitymap, double threshold) -> DensityMap"""
914  return _IMP_bayesianem.get_masked_map(gmm, weights, densitymap, threshold)
915 
916 def get_sub_map(dm, sub_gmm, gmm):
917  """get_sub_map(DensityMap dm, DensityMap sub_gmm, DensityMap gmm) -> DensityMap"""
918  return _IMP_bayesianem.get_sub_map(dm, sub_gmm, gmm)
919 
920 def get_overlap_fast(gmm, weights, dm, factor=2.5):
921  """
922  get_overlap_fast(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5) -> double
923  get_overlap_fast(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm) -> double
924  """
925  return _IMP_bayesianem.get_overlap_fast(gmm, weights, dm, factor)
926 
927 def get_overlap_binned(gmm, weights, dm, factor=2.5, Nbin=100):
928  """
929  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5, int Nbin=100) -> IMP::algebra::Vector3Ds
930  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm, double factor=2.5) -> IMP::algebra::Vector3Ds
931  get_overlap_binned(IMP::algebra::Gaussian3Ds const & gmm, IMP::Floats const & weights, DensityMap dm) -> IMP::algebra::Vector3Ds
932  """
933  return _IMP_bayesianem.get_overlap_binned(gmm, weights, dm, factor, Nbin)
934 
935 def get_rotation_matrix(x, y):
936  """get_rotation_matrix(Vector3D x, Vector3D y) -> Rotation3D"""
937  return _IMP_bayesianem.get_rotation_matrix(x, y)
938 
939 def sgn(v):
940  """sgn(double v) -> float"""
941  return _IMP_bayesianem.sgn(v)
942 
943 def NormalizePCA(pca, ps):
944  """NormalizePCA(PrincipalComponentAnalysis3D pca, IMP::Particles const & ps) -> PrincipalComponentAnalysis3D"""
945  return _IMP_bayesianem.NormalizePCA(pca, ps)
946 
947 def PCAalign(pca1, pca2):
948  """PCAalign(PrincipalComponentAnalysis3D pca1, PrincipalComponentAnalysis3D pca2) -> IMP::algebra::Transformation3Ds"""
949  return _IMP_bayesianem.PCAalign(pca1, pca2)
950 
951 def get_module_version():
952  """get_module_version() -> std::string const"""
953  return _IMP_bayesianem.get_module_version()
954 
955 def get_example_path(fname):
956  """get_example_path(std::string fname) -> std::string"""
957  return _IMP_bayesianem.get_example_path(fname)
958 
959 def get_data_path(fname):
960  """get_data_path(std::string fname) -> std::string"""
961  return _IMP_bayesianem.get_data_path(fname)
962 
963 from . import _version_check
964 _version_check.check_version(get_module_version())
965 __version__ = get_module_version()
966 
967 
968 
IMP::container
Various classes to hold sets of particles.
IMP::cgal
Make CGAL functionality available to IMP.
IMP::get_data_path
std::string get_data_path(std::string file_name)
Return the full path to one of this module's data files.
IMP::score_functor
Composable functors to implement scores via compile-time composition.
IMP::statistics
Code to compute statistical measures.
IMP::algebra::get_transformation_aligning_first_to_second
IMP::algebra::Transformation3D get_transformation_aligning_first_to_second(const Vector3DsOrXYZs0 &source, const Vector3DsOrXYZs1 &target)
Compute the rigid transform bringing the first point set to the second.
Definition: geometric_alignment.h:45
IMP::em
Basic utilities for handling cryo-electron microscopy 3D density maps.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition: core/Hierarchy.h:411
IMP::bayesianem::get_grid
DensityGrid get_grid(IMP::em::DensityMap *in)
Return a dense grid containing the voxels of the passed density map.
Definition: bayesianem/utilities.h:174
IMP::core
Basic functionality that is expected to be used by a wide variety of IMP users.
IMP::algebra
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
IMP::get_example_path
std::string get_example_path(std::string file_name)
Return the full path to one of this module's example files.
IMP::display
Output IMP model data in various file formats.
IMP::atom
Functionality for loading, creating, manipulating and scoring atomic structures.
IMP::get_indexes
ParticleIndexes get_indexes(const ParticlesTemp &ps)
Get the indexes from a list of particles.
IMP::saxs
Support for small angle X-ray scattering (SAXS) data.
IMP::get_module_version
std::string get_module_version()
Return the version of this module, as a string.
Definition: EMageFit/__init__.py:5
IMP::isd
Inferential scoring building on methods developed as part of the Inferential Structure Determination ...
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition: Restraint.h:53