11 from __future__
import print_function, division, absolute_import
17 from sys
import version_info
18 if version_info >= (2, 6, 0):
19 def swig_import_helper():
20 from os.path
import dirname
24 fp, pathname, description = imp.find_module(
'_IMP_score_functor', [dirname(__file__)])
26 import _IMP_score_functor
27 return _IMP_score_functor
30 _mod = imp.load_module(
'_IMP_score_functor', fp, pathname, description)
34 _IMP_score_functor = swig_import_helper()
35 del swig_import_helper
37 import _IMP_score_functor
40 _swig_property = property
45 def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
46 if (name ==
"thisown"):
47 return self.this.own(value)
49 if type(value).__name__ ==
'SwigPyObject':
50 self.__dict__[name] = value
52 method = class_type.__swig_setmethods__.get(name,
None)
54 return method(self, value)
56 object.__setattr__(self, name, value)
58 raise AttributeError(
"You cannot add attributes to %s" % self)
61 def _swig_setattr(self, class_type, name, value):
62 return _swig_setattr_nondynamic(self, class_type, name, value, 0)
65 def _swig_getattr_nondynamic(self, class_type, name, static=1):
66 if (name ==
"thisown"):
67 return self.this.own()
68 method = class_type.__swig_getmethods__.get(name,
None)
72 return object.__getattr__(self, name)
74 raise AttributeError(name)
76 def _swig_getattr(self, class_type, name):
77 return _swig_getattr_nondynamic(self, class_type, name, 0)
82 strthis =
"proxy of " + self.this.__repr__()
85 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
90 except AttributeError:
97 def _swig_setattr_nondynamic_method(set):
98 def set_attr(self, name, value):
99 if (name ==
"thisown"):
100 return self.this.own(value)
101 if hasattr(self, name)
or (name ==
"this"):
102 set(self, name, value)
104 raise AttributeError(
"You cannot add attributes to %s" % self)
110 weakref_proxy = weakref.proxy
112 weakref_proxy =
lambda x: x
115 class IMP_SCORE_FUNCTOR_SwigPyIterator(object):
116 """Proxy of C++ swig::IMP_SCORE_FUNCTOR_SwigPyIterator class"""
117 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
119 def __init__(self, *args, **kwargs):
120 raise AttributeError(
"No constructor defined - class is abstract")
121 __repr__ = _swig_repr
122 __swig_destroy__ = _IMP_score_functor.delete_IMP_SCORE_FUNCTOR_SwigPyIterator
123 __del__ =
lambda self:
None
126 """value(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
127 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_value(self)
132 incr(IMP_SCORE_FUNCTOR_SwigPyIterator self, size_t n=1) -> IMP_SCORE_FUNCTOR_SwigPyIterator
133 incr(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator
135 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_incr(self, n)
140 decr(IMP_SCORE_FUNCTOR_SwigPyIterator self, size_t n=1) -> IMP_SCORE_FUNCTOR_SwigPyIterator
141 decr(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator
143 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_decr(self, n)
146 def distance(self, x):
147 """distance(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> ptrdiff_t"""
148 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_distance(self, x)
152 """equal(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
153 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_equal(self, x)
157 """copy(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
158 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_copy(self)
162 """next(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
163 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_next(self)
167 """__next__(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
168 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___next__(self)
172 """previous(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
173 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_previous(self)
176 def advance(self, n):
177 """advance(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
178 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_advance(self, n)
182 """__eq__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
183 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___eq__(self, x)
187 """__ne__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
188 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___ne__(self, x)
191 def __iadd__(self, n):
192 """__iadd__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
193 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___iadd__(self, n)
196 def __isub__(self, n):
197 """__isub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
198 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___isub__(self, n)
201 def __add__(self, n):
202 """__add__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
203 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___add__(self, n)
206 def __sub__(self, *args):
208 __sub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator
209 __sub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> ptrdiff_t
211 return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___sub__(self, *args)
215 IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister = _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister
216 IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister(IMP_SCORE_FUNCTOR_SwigPyIterator)
225 _IMP_score_functor.IMP_DEBUG_swigconstant(_IMP_score_functor)
226 IMP_DEBUG = _IMP_score_functor.IMP_DEBUG
228 _IMP_score_functor.IMP_RELEASE_swigconstant(_IMP_score_functor)
229 IMP_RELEASE = _IMP_score_functor.IMP_RELEASE
231 _IMP_score_functor.IMP_SILENT_swigconstant(_IMP_score_functor)
232 IMP_SILENT = _IMP_score_functor.IMP_SILENT
234 _IMP_score_functor.IMP_PROGRESS_swigconstant(_IMP_score_functor)
235 IMP_PROGRESS = _IMP_score_functor.IMP_PROGRESS
237 _IMP_score_functor.IMP_TERSE_swigconstant(_IMP_score_functor)
238 IMP_TERSE = _IMP_score_functor.IMP_TERSE
240 _IMP_score_functor.IMP_VERBOSE_swigconstant(_IMP_score_functor)
241 IMP_VERBOSE = _IMP_score_functor.IMP_VERBOSE
243 _IMP_score_functor.IMP_MEMORY_swigconstant(_IMP_score_functor)
244 IMP_MEMORY = _IMP_score_functor.IMP_MEMORY
246 _IMP_score_functor.IMP_NONE_swigconstant(_IMP_score_functor)
247 IMP_NONE = _IMP_score_functor.IMP_NONE
249 _IMP_score_functor.IMP_USAGE_swigconstant(_IMP_score_functor)
250 IMP_USAGE = _IMP_score_functor.IMP_USAGE
252 _IMP_score_functor.IMP_INTERNAL_swigconstant(_IMP_score_functor)
253 IMP_INTERNAL = _IMP_score_functor.IMP_INTERNAL
255 _IMP_score_functor.IMP_KERNEL_HAS_LOG4CXX_swigconstant(_IMP_score_functor)
256 IMP_KERNEL_HAS_LOG4CXX = _IMP_score_functor.IMP_KERNEL_HAS_LOG4CXX
258 _IMP_score_functor.IMP_COMPILER_HAS_DEBUG_VECTOR_swigconstant(_IMP_score_functor)
259 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_score_functor.IMP_COMPILER_HAS_DEBUG_VECTOR
261 _IMP_score_functor.IMP_COMPILER_HAS_RANDOM_SHUFFLE_swigconstant(_IMP_score_functor)
262 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_score_functor.IMP_COMPILER_HAS_RANDOM_SHUFFLE
264 _IMP_score_functor.IMP_COMPILER_HAS_THREE_WAY_swigconstant(_IMP_score_functor)
265 IMP_COMPILER_HAS_THREE_WAY = _IMP_score_functor.IMP_COMPILER_HAS_THREE_WAY
267 _IMP_score_functor.IMP_KERNEL_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
268 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_KERNEL_HAS_BOOST_RANDOM
270 _IMP_score_functor.IMP_KERNEL_HAS_NUMPY_swigconstant(_IMP_score_functor)
271 IMP_KERNEL_HAS_NUMPY = _IMP_score_functor.IMP_KERNEL_HAS_NUMPY
273 _IMP_score_functor.IMP_KERNEL_HAS_GPERFTOOLS_swigconstant(_IMP_score_functor)
274 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_score_functor.IMP_KERNEL_HAS_GPERFTOOLS
276 _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER_swigconstant(_IMP_score_functor)
277 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
279 _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER_swigconstant(_IMP_score_functor)
280 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_score_functor.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
282 _IMP_score_functor.IMPKERNEL_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
283 IMPKERNEL_SHOW_WARNINGS = _IMP_score_functor.IMPKERNEL_SHOW_WARNINGS
286 class _DirectorObjects(object):
287 """@internal Simple class to keep references to director objects
288 to prevent premature deletion."""
291 def register(self, obj):
292 """Take a reference to a director object; will only work for
293 refcounted C++ classes"""
294 if hasattr(obj,
'get_ref_count'):
295 self._objects.append(obj)
297 """Only drop our reference and allow cleanup by Python if no other
298 Python references exist (we hold 3 references: one in self._objects,
299 one in x, and one in the argument list for getrefcount) *and* no
300 other C++ references exist (the Python object always holds one)"""
301 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
302 or x.get_ref_count() > 1]
306 def get_object_count(self):
307 """Get number of director objects (useful for testing only)"""
308 return len(self._objects)
309 _director_objects = _DirectorObjects()
311 class _ostream(object):
312 """Proxy of C++ std::ostream class"""
313 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
315 def __init__(self, *args, **kwargs):
316 raise AttributeError(
"No constructor defined")
317 __repr__ = _swig_repr
319 def write(self, osa_buf):
320 """write(_ostream self, char const * osa_buf)"""
321 return _IMP_score_functor._ostream_write(self, osa_buf)
323 _ostream_swigregister = _IMP_score_functor._ostream_swigregister
324 _ostream_swigregister(_ostream)
327 _IMP_score_functor.IMP_HAS_NOEXCEPT_swigconstant(_IMP_score_functor)
328 IMP_HAS_NOEXCEPT = _IMP_score_functor.IMP_HAS_NOEXCEPT
330 _IMP_score_functor.IMP_C_OPEN_BINARY_swigconstant(_IMP_score_functor)
331 IMP_C_OPEN_BINARY = _IMP_score_functor.IMP_C_OPEN_BINARY
334 _IMP_score_functor.IMP_CGAL_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_score_functor)
335 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_FILESYSTEM
337 _IMP_score_functor.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_score_functor)
338 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
340 _IMP_score_functor.IMP_CGAL_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
341 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_RANDOM
343 _IMP_score_functor.IMP_CGAL_HAS_BOOST_SYSTEM_swigconstant(_IMP_score_functor)
344 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_SYSTEM
346 _IMP_score_functor.IMP_CGAL_HAS_NUMPY_swigconstant(_IMP_score_functor)
347 IMP_CGAL_HAS_NUMPY = _IMP_score_functor.IMP_CGAL_HAS_NUMPY
349 _IMP_score_functor.IMPCGAL_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
350 IMPCGAL_SHOW_WARNINGS = _IMP_score_functor.IMPCGAL_SHOW_WARNINGS
353 _IMP_score_functor.IMP_ALGEBRA_HAS_IMP_CGAL_swigconstant(_IMP_score_functor)
354 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_score_functor.IMP_ALGEBRA_HAS_IMP_CGAL
356 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_score_functor)
357 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
359 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_score_functor)
360 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
362 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
363 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_RANDOM
365 _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_SYSTEM_swigconstant(_IMP_score_functor)
366 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_SYSTEM
368 _IMP_score_functor.IMP_ALGEBRA_HAS_CGAL_swigconstant(_IMP_score_functor)
369 IMP_ALGEBRA_HAS_CGAL = _IMP_score_functor.IMP_ALGEBRA_HAS_CGAL
371 _IMP_score_functor.IMP_ALGEBRA_HAS_NUMPY_swigconstant(_IMP_score_functor)
372 IMP_ALGEBRA_HAS_NUMPY = _IMP_score_functor.IMP_ALGEBRA_HAS_NUMPY
374 _IMP_score_functor.IMP_ALGEBRA_HAS_ANN_swigconstant(_IMP_score_functor)
375 IMP_ALGEBRA_HAS_ANN = _IMP_score_functor.IMP_ALGEBRA_HAS_ANN
377 _IMP_score_functor.IMPALGEBRA_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
378 IMPALGEBRA_SHOW_WARNINGS = _IMP_score_functor.IMPALGEBRA_SHOW_WARNINGS
381 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL_swigconstant(_IMP_score_functor)
382 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
384 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM_swigconstant(_IMP_score_functor)
385 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
387 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS_swigconstant(_IMP_score_functor)
388 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
390 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM_swigconstant(_IMP_score_functor)
391 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
393 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM_swigconstant(_IMP_score_functor)
394 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
396 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_CGAL_swigconstant(_IMP_score_functor)
397 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_CGAL
399 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_HDF5_swigconstant(_IMP_score_functor)
400 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_HDF5
402 _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_NUMPY_swigconstant(_IMP_score_functor)
403 IMP_SCORE_FUNCTOR_HAS_NUMPY = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_NUMPY
405 _IMP_score_functor.IMPSCOREFUNCTOR_SHOW_WARNINGS_swigconstant(_IMP_score_functor)
406 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_score_functor.IMPSCOREFUNCTOR_SHOW_WARNINGS
408 """Proxy of C++ IMP::score_functor::Score class"""
409 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
410 __repr__ = _swig_repr
413 """__init__(IMP::score_functor::Score self) -> Score"""
414 this = _IMP_score_functor.new_Score()
416 self.this.append(this)
420 def get_inputs(self, m, pis):
421 """get_inputs(Score self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
422 return _IMP_score_functor.Score_get_inputs(self, m, pis)
425 def show(self, arg2):
426 """show(Score self, _ostream arg2)"""
427 return _IMP_score_functor.Score_show(self, arg2)
429 __swig_destroy__ = _IMP_score_functor.delete_Score
430 __del__ =
lambda self:
None
431 Score_swigregister = _IMP_score_functor.Score_swigregister
432 Score_swigregister(Score)
434 class ScoreWithCache(object):
435 """Proxy of C++ IMP::score_functor::ScoreWithCache class"""
436 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
437 __repr__ = _swig_repr
440 """__init__(IMP::score_functor::ScoreWithCache self) -> ScoreWithCache"""
441 this = _IMP_score_functor.new_ScoreWithCache()
443 self.this.append(this)
447 def get_inputs(self, m, pis):
448 """get_inputs(ScoreWithCache self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
449 return _IMP_score_functor.ScoreWithCache_get_inputs(self, m, pis)
452 def show(self, arg2):
453 """show(ScoreWithCache self, _ostream arg2)"""
454 return _IMP_score_functor.ScoreWithCache_show(self, arg2)
456 __swig_destroy__ = _IMP_score_functor.delete_ScoreWithCache
457 __del__ =
lambda self:
None
458 ScoreWithCache_swigregister = _IMP_score_functor.ScoreWithCache_swigregister
459 ScoreWithCache_swigregister(ScoreWithCache)
461 class _DopeBase(Score):
462 """Proxy of C++ IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> class"""
463 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
464 __repr__ = _swig_repr
466 def __init__(self, *args):
468 __init__(IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> self, IntKey k, double threshold, TextInput data_file) -> _DopeBase
469 __init__(IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> self, IntKey k, double threshold, TextInput data_file, unsigned int shift) -> _DopeBase
471 this = _IMP_score_functor.new__DopeBase(*args)
473 self.this.append(this)
477 def get_score(self, m, pp, distance):
478 """get_score(_DopeBase self, Model m, IMP::ParticleIndexPair const & pp, double distance) -> double"""
479 return _IMP_score_functor._DopeBase_get_score(self, m, pp, distance)
482 def get_score_and_derivative(self, m, pp, distance):
483 """get_score_and_derivative(_DopeBase self, Model m, IMP::Array< 2,IMP::ParticleIndex > const & pp, double distance) -> IMP::DerivativePair"""
484 return _IMP_score_functor._DopeBase_get_score_and_derivative(self, m, pp, distance)
487 def get_maximum_range(self, arg2, arg3):
488 """get_maximum_range(_DopeBase self, Model arg2, IMP::ParticleIndexPair const & arg3) -> double"""
489 return _IMP_score_functor._DopeBase_get_maximum_range(self, arg2, arg3)
492 def get_is_trivially_zero(self, m, p, squared_distance):
493 """get_is_trivially_zero(_DopeBase self, Model m, IMP::ParticleIndexPair const & p, double squared_distance) -> bool"""
494 return _IMP_score_functor._DopeBase_get_is_trivially_zero(self, m, p, squared_distance)
496 __swig_destroy__ = _IMP_score_functor.delete__DopeBase
497 __del__ =
lambda self:
None
498 _DopeBase_swigregister = _IMP_score_functor._DopeBase_swigregister
499 _DopeBase_swigregister(_DopeBase)
501 class _LoopStatisticalBase(Score):
502 """Proxy of C++ IMP::score_functor::Statistical<(IMP::score_functor::LoopStatisticalType,false,true)> class"""
503 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
504 __repr__ = _swig_repr
506 def __init__(self, *args):
508 __init__(IMP::score_functor::Statistical<(IMP::score_functor::LoopStatisticalType,false,true)> self, IntKey k, double threshold, TextInput data_file) -> _LoopStatisticalBase
509 __init__(IMP::score_functor::Statistical<(IMP::score_functor::LoopStatisticalType,false,true)> self, IntKey k, double threshold, TextInput data_file, unsigned int shift) -> _LoopStatisticalBase
511 this = _IMP_score_functor.new__LoopStatisticalBase(*args)
513 self.this.append(this)
517 def get_score(self, m, pp, distance):
518 """get_score(_LoopStatisticalBase self, Model m, IMP::ParticleIndexPair const & pp, double distance) -> double"""
519 return _IMP_score_functor._LoopStatisticalBase_get_score(self, m, pp, distance)
522 def get_score_and_derivative(self, m, pp, distance):
523 """get_score_and_derivative(_LoopStatisticalBase self, Model m, IMP::Array< 2,IMP::ParticleIndex > const & pp, double distance) -> IMP::DerivativePair"""
524 return _IMP_score_functor._LoopStatisticalBase_get_score_and_derivative(self, m, pp, distance)
527 def get_maximum_range(self, arg2, arg3):
528 """get_maximum_range(_LoopStatisticalBase self, Model arg2, IMP::ParticleIndexPair const & arg3) -> double"""
529 return _IMP_score_functor._LoopStatisticalBase_get_maximum_range(self, arg2, arg3)
532 def get_is_trivially_zero(self, m, p, squared_distance):
533 """get_is_trivially_zero(_LoopStatisticalBase self, Model m, IMP::ParticleIndexPair const & p, double squared_distance) -> bool"""
534 return _IMP_score_functor._LoopStatisticalBase_get_is_trivially_zero(self, m, p, squared_distance)
536 __swig_destroy__ = _IMP_score_functor.delete__LoopStatisticalBase
537 __del__ =
lambda self:
None
538 _LoopStatisticalBase_swigregister = _IMP_score_functor._LoopStatisticalBase_swigregister
539 _LoopStatisticalBase_swigregister(_LoopStatisticalBase)
541 class Dope(_DopeBase):
542 """Proxy of C++ IMP::score_functor::Dope class"""
543 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
544 __repr__ = _swig_repr
546 def __init__(self, *args):
548 __init__(IMP::score_functor::Dope self, double threshold) -> Dope
549 __init__(IMP::score_functor::Dope self) -> Dope
550 __init__(IMP::score_functor::Dope self, double threshold, TextInput data_file) -> Dope
552 this = _IMP_score_functor.new_Dope(*args)
554 self.this.append(this)
558 def get_dope_type_key():
559 """get_dope_type_key() -> IntKey"""
560 return _IMP_score_functor.Dope_get_dope_type_key()
562 get_dope_type_key = staticmethod(get_dope_type_key)
563 __swig_destroy__ = _IMP_score_functor.delete_Dope
564 __del__ =
lambda self:
None
565 Dope_swigregister = _IMP_score_functor.Dope_swigregister
566 Dope_swigregister(Dope)
568 def Dope_get_dope_type_key():
569 """Dope_get_dope_type_key() -> IntKey"""
570 return _IMP_score_functor.Dope_get_dope_type_key()
572 class LoopStatistical(_LoopStatisticalBase):
573 """Proxy of C++ IMP::score_functor::LoopStatistical class"""
574 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
575 __repr__ = _swig_repr
577 def __init__(self, *args):
579 __init__(IMP::score_functor::LoopStatistical self, double threshold) -> LoopStatistical
580 __init__(IMP::score_functor::LoopStatistical self) -> LoopStatistical
581 __init__(IMP::score_functor::LoopStatistical self, double threshold, TextInput data_file) -> LoopStatistical
583 this = _IMP_score_functor.new_LoopStatistical(*args)
585 self.this.append(this)
589 def get_loop_type_key():
590 """get_loop_type_key() -> IntKey"""
591 return _IMP_score_functor.LoopStatistical_get_loop_type_key()
593 get_loop_type_key = staticmethod(get_loop_type_key)
594 __swig_destroy__ = _IMP_score_functor.delete_LoopStatistical
595 __del__ =
lambda self:
None
596 LoopStatistical_swigregister = _IMP_score_functor.LoopStatistical_swigregister
597 LoopStatistical_swigregister(LoopStatistical)
599 def LoopStatistical_get_loop_type_key():
600 """LoopStatistical_get_loop_type_key() -> IntKey"""
601 return _IMP_score_functor.LoopStatistical_get_loop_type_key()
603 class UnaryFunctionEvaluate(Score):
604 """Proxy of C++ IMP::score_functor::UnaryFunctionEvaluate class"""
605 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
606 __repr__ = _swig_repr
608 def __init__(self, uf):
609 """__init__(IMP::score_functor::UnaryFunctionEvaluate self, UnaryFunction uf) -> UnaryFunctionEvaluate"""
610 this = _IMP_score_functor.new_UnaryFunctionEvaluate(uf)
612 self.this.append(this)
615 __swig_destroy__ = _IMP_score_functor.delete_UnaryFunctionEvaluate
616 __del__ =
lambda self:
None
617 UnaryFunctionEvaluate_swigregister = _IMP_score_functor.UnaryFunctionEvaluate_swigregister
618 UnaryFunctionEvaluate_swigregister(UnaryFunctionEvaluate)
622 """get_module_version() -> std::string const"""
623 return _IMP_score_functor.get_module_version()
626 """get_example_path(std::string fname) -> std::string"""
627 return _IMP_score_functor.get_example_path(fname)
630 """get_data_path(std::string fname) -> std::string"""
631 return _IMP_score_functor.get_data_path(fname)
633 from .
import _version_check
def get_data_path
Return the full path to one of this module's data files.
def get_module_version
Return the version of this module, as a string.
def get_example_path
Return the full path to one of this module's example files.
Make CGAL functionality available to IMP.
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...