pca_based_rigid_fitting.h File Reference

preforms rigid fitting between a set of particles and a density map More...

#include <IMP/core/XYZR.h>
#include <IMP/algebra/Transformation3D.h>
#include <IMP/Particle.h>
#include <IMP/Model.h>
#include <IMP/em/DensityMap.h>
#include <IMP/em/rigid_fitting.h>
#include <IMP/multifit/multifit_config.h>
#include <IMP/atom/Mass.h>
#include <IMP/ScoreState.h>
#include <IMP/container/ListSingletonContainer.h>
#include <IMP/algebra/eigen_analysis.h>
#include <algorithm>

Include dependency graph for pca_based_rigid_fitting.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	IMP
	Base functionality and abstract base classes for representation, scoring and sampling.
	IMP::multifit
	Fitting atomic structures into a cryo-electron microscopy density map.

Functions
em::FittingSolutions	IMP::multifit::pca_based_rigid_fitting (core::RigidBody rb, Refiner *rb_refiner, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
	Compute fitting scores for a given set of rigid transformations. More...
em::FittingSolutions	IMP::multifit::pca_based_rigid_fitting (ParticlesTemp ps, em::DensityMap *em_map, Float threshold, FloatKey wei_key=atom::Mass::get_mass_key(), algebra::PrincipalComponentAnalysis dens_pca_input=algebra::PrincipalComponentAnalysis())
	Compute fitting scores for a given set of rigid transformations. More...
void	IMP::multifit::write_markers (const algebra::PrincipalComponentAnalysisD< 3 > &pca, std::ostream &out)

Detailed Description

preforms rigid fitting between a set of particles and a density map

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file pca_based_rigid_fitting.h.